View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6261_low_15 (Length: 253)
Name: NF6261_low_15
Description: NF6261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6261_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 42024933 - 42024708
Alignment:
| Q |
11 |
cagagaaaagacagagagttccctcagcatacaaccgattcatcaagtgagtatagtcatttaaaaccattgtacnnnnnnnn-aacttcatattcaatt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42024933 |
cagagaaaagacagagagttccctcagcatacaaccgattcatcaagtgagtatagtcatttaaaaccattgtactttttttttaacttcatattcaatt |
42024834 |
T |
|
| Q |
110 |
tctgatatataatattaaattttcttgttaatgttataaaagtgtgaagtaaatctaaatacggtccatctgcagggacgagatccaacgcattaagtct |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42024833 |
tctgatatataatattaaattttcttgttaatgttattaaagtgtgaagtaaatctaaatacggtccatctgcagggacgagatccaacgcattaagtct |
42024734 |
T |
|
| Q |
210 |
gtcaatcctgatataacccacaggga |
235 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
42024733 |
gtcaatcctgatataacccacaggga |
42024708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University