View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6261_low_18 (Length: 240)
Name: NF6261_low_18
Description: NF6261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6261_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 8 - 209
Target Start/End: Complemental strand, 56069490 - 56069276
Alignment:
| Q |
8 |
tataatggaaatatgaaaccatggatcgagataagtattcaaaagtttcaaggttattggacgaagtacgttcattatgattctgtgtatttgcgagaat |
107 |
Q |
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| T |
56069490 |
tataatggaaatatgaaaccatggctcgagataagtattcaaaagtttcaaggttattggacgaagtacattcattatgattctgtgtatttgcgagaat |
56069391 |
T |
|
| Q |
108 |
gcaacatccatccataataaaggtcaa-------------ttgcaatccattatataatttattattccttttgtatacatggcttgcttcgtatcagtc |
194 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
56069390 |
gcaacatccatccataataaaggtcaatgcaccttataggttgcaatccattatataatttattattctttttgtatacatggcttgcttcgtatcagtc |
56069291 |
T |
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| Q |
195 |
atttttacaaactta |
209 |
Q |
| |
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||||||||||||||| |
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| T |
56069290 |
atttttacaaactta |
56069276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 38398840 - 38398961
Alignment:
| Q |
5 |
cactataatggaaatatgaaaccatggatcgagataagtattcaaaagtttcaaggttattggacgaagtacgttcattatgattctgtgtatttgcgag |
104 |
Q |
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|||||||| ||||| ||||||| ||| | ||||||||||| | |||||| ||||||||||||||||||| ||| ||||||| || ||||||||||| |
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| T |
38398840 |
cactataacggaaacttgaaaccgtggctggagataagtataccgaagtttaaaggttattggacgaagtatgttgattatgagagtgagtatttgcgag |
38398939 |
T |
|
| Q |
105 |
aatgcaacatccatccataata |
126 |
Q |
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||||||| ||| ||| |||||| |
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| T |
38398940 |
aatgcaatatcaatcaataata |
38398961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 10171151 - 10171266
Alignment:
| Q |
5 |
cactataatggaaatatgaaaccatggatcgagataagtattcaaaagtttcaaggttattggacgaagtacgttcattatgattctgtgtatttgcgag |
104 |
Q |
| |
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||||| ||||| || ||||| |||||| | ||||||||||||| |||||| |||||| ||||| ||||| || | ||| || ||| |||||||||| |
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| T |
10171151 |
cactacaatgggaacatgaagccatggttggagataagtattcccaagtttagaggttactggacaaagtatgtcaactataatcatgtctatttgcgag |
10171250 |
T |
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| Q |
105 |
aatgcaacatccatcc |
120 |
Q |
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||||||||||| |||| |
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| T |
10171251 |
aatgcaacatcaatcc |
10171266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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