View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6261_low_20 (Length: 238)
Name: NF6261_low_20
Description: NF6261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6261_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 31221731 - 31221952
Alignment:
| Q |
1 |
tttgttttattatccgcatgctagagacgaaaaacttaaaccgatagcgaaaatcgaacctgaaactttgaggagagcacattccaaagtctcaagtcaa |
100 |
Q |
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||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31221731 |
tttgttttaatatcctcatgctagagacgaaaaacttaaactgatagcgaaaatcgtacctgaaaccttgaggagagcacattccaaagtctcaagtcaa |
31221830 |
T |
|
| Q |
101 |
aacgactagaccaactaaaactaagagatacgtttataaggtacataccttcttcttgtaagagagtagctccactagcaaatgaagagatcaaacaaaa |
200 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31221831 |
aacgactagaccaaataaaactaagagagacgtttataaggtacataccttcttcttgtaagagagtagctcctctagcaaatgaagagatcaaacaaaa |
31221930 |
T |
|
| Q |
201 |
ggaaagaaacaaaagatgcaaa |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
31221931 |
ggaaagaaacaaaagatgcaaa |
31221952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 31202194 - 31202399
Alignment:
| Q |
17 |
catgctagagacgaaaaacttaaaccgatagcgaaaatcgaacctgaaactttgaggagagcacattccaaagtctcaagtcaaaacgactagaccaact |
116 |
Q |
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||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31202194 |
catgccagagacgaaaaactaaaattgatagcgaaaatcgaacctgaaactttgaggagagcacattccaaagtctcaagtcaaaacgactagaccaact |
31202293 |
T |
|
| Q |
117 |
aaaactaagagatacgtttataaggtacataccttcttcttgtaagagagtagctccactagcaaatgaagagatcaaacaaaaggaaagaaacaaaaga |
216 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31202294 |
aaaactaagagagacgtttataaggtacataccttcttcttgtaagagagtagctccactagcaaatgaagagatcaaacaaaaggaaagaaacaaaaga |
31202393 |
T |
|
| Q |
217 |
tgcaaa |
222 |
Q |
| |
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|||||| |
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| T |
31202394 |
tgcaaa |
31202399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 31183155 - 31183373
Alignment:
| Q |
1 |
tttgttttattatccgcatgctagagacgaaaaacttaaaccgatagcgaaaatcgaacctgaaactttgaggagagcacattccaaagtctcaagtcaa |
100 |
Q |
| |
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||||||||| ||||| |||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31183155 |
tttgttttaatatcctcatg---gagacgaaaaacttaaacagatagcgaaaatcgaacctgaaaccttgaggagagcacattccaaagtctcaagtcaa |
31183251 |
T |
|
| Q |
101 |
aacgactagaccaactaaaactaagagatacgtttataaggtacataccttcttcttgtaagagagtagctccactagcaaatgaagagatcaaacaaaa |
200 |
Q |
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|| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31183252 |
aatgactagaccaacttaaactaagagagacgtttataaggtacataccttcttcttgtaagagagtagctccactagcaaatgaagagatcaaacaaaa |
31183351 |
T |
|
| Q |
201 |
ggaaagaaacaaaagatgcaaa |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
31183352 |
ggaaagaaacaaaagatgcaaa |
31183373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 31248818 - 31248901
Alignment:
| Q |
135 |
tataaggtacataccttcttcttgtaagagagtagctccactagcaaatgaagagatcaaacaaaaggaaagaaacaaaagatg |
218 |
Q |
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|||||||||| |||||||||||| ||| | |||||||||||||||||||||||||||||||||||| | ||||| ||||||||| |
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| T |
31248818 |
tataaggtacgtaccttcttcttctaataaagtagctccactagcaaatgaagagatcaaacaaaaagcaagaagcaaaagatg |
31248901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 31238264 - 31238343
Alignment:
| Q |
135 |
tataaggtacataccttcttcttgtaagagagtagctccactagcaaatgaagagatcaaacaaaaggaaagaaacaaaa |
214 |
Q |
| |
|
|||||||||| |||||||||||| ||| | ||||| ||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
31238264 |
tataaggtacgtaccttcttcttctaacaaagtagttccactagcaaatgaagagataaaacaaaaggaaagaagcaaaa |
31238343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 37360793 - 37360749
Alignment:
| Q |
51 |
aaatcgaacctgaaactttgaggagagcacattccaaagtctcaa |
95 |
Q |
| |
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||||||||||||| |||||||| ||||||||||||||| |||||| |
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| T |
37360793 |
aaatcgaacctgacactttgagaagagcacattccaaaatctcaa |
37360749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 3799981 - 3799935
Alignment:
| Q |
52 |
aatcgaacctgaaactttgagga-gagcacattccaaagtctcaagt |
97 |
Q |
| |
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||||||||||||||||| ||||| ||||||||||| ||||||||||| |
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| T |
3799981 |
aatcgaacctgaaacttcgaggaggagcacattcctaagtctcaagt |
3799935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 9936962 - 9937026
Alignment:
| Q |
52 |
aatcgaacctgaaactttgagga-gagcacattccaaagtctcaagtcaaaacgactagaccaac |
115 |
Q |
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||||||||||||||||| ||||| ||||||| ||| |||||||||||| | || ||||| ||||| |
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| T |
9936962 |
aatcgaacctgaaacttcgaggaggagcacactcccaagtctcaagtcgataccactaggccaac |
9937026 |
T |
|
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