View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6261_low_3 (Length: 489)

Name: NF6261_low_3
Description: NF6261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6261_low_3
NF6261_low_3
[»] chr3 (2 HSPs)
chr3 (19-484)||(49772820-49773290)
chr3 (319-379)||(25523363-25523423)
[»] chr2 (3 HSPs)
chr2 (260-468)||(44223212-44223420)
chr2 (296-453)||(44211065-44211222)
chr2 (311-468)||(44234034-44234191)
[»] chr7 (8 HSPs)
chr7 (268-484)||(39353429-39353645)
chr7 (260-484)||(39564298-39564522)
chr7 (260-474)||(39338578-39338792)
chr7 (268-474)||(39365939-39366145)
chr7 (260-474)||(39547529-39547743)
chr7 (410-474)||(39589357-39589421)
chr7 (413-484)||(39538061-39538132)
chr7 (28-64)||(5369833-5369869)
[»] chr1 (2 HSPs)
chr1 (243-351)||(2149039-2149147)
chr1 (248-468)||(2160905-2161125)
[»] chr4 (4 HSPs)
chr4 (259-369)||(2886877-2886987)
chr4 (260-369)||(2877111-2877220)
chr4 (259-351)||(2897407-2897499)
chr4 (407-471)||(2877258-2877322)
[»] chr6 (1 HSPs)
chr6 (26-58)||(3181228-3181260)


Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 19 - 484
Target Start/End: Original strand, 49772820 - 49773290
Alignment:
Q  19 tatgctatataagcgcttaattaaattgtttattcaaacagggcctgattcatcctgcatgcacatagcataatatagtggttgcatgtgaagcttacca 118  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49772820 tatgctatataagcgcttaattaagttgtttattcaaacagggcctgattcatcctgcatgcacatagcataatatagtggttgcatgtgaagcttacca 49772919  T
Q  119 aagttacacactctgaataaaacaagcataaaaaagtgacagtaaatttacactctccttactgatatatttctaatagtctcccttt-----gtgcttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||    
T  49772920 aagttacacactctgaataaaacaagcataaaaaagtgacagtaaatttacactctccttactgatatatttctaatagtctccctttaatttgtgcttg 49773019  T
Q  214 cttgtaggaaatgaaagccaaaggtattcctgaagatcgacttgaacttttgacgggtgttaatggagcttttagaccaggagttctgacagctctaatg 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  49773020 cttgtaggaaatgaaagccaaaggtattcctgaagatcgacttgaacttttgacaggtgttaatggagcttttagaccaggagttctgacagctctaatg 49773119  T
Q  314 ggtataagtggagctggtaaaacaactctaatggatgtgctgtctggaaggaaaacaacaggatatgttcaaggacaaatcactatatccgggtacccta 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49773120 ggtataagtggagctggtaaaacaactctaatggatgtgctgtctggaaggaaaacaacaggatatgttcaaggacaaatcactatatccgggtacccta 49773219  T
Q  414 agaagcaagaaacatttgctcggatatcaggatactgtgagcaaactgatatccactctccctatgctact 484  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  49773220 agaagcaagaaacattttctcggatatcaggatactgtgagcaaactgatatccactctccccatgttact 49773290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 379
Target Start/End: Complemental strand, 25523423 - 25523363
Alignment:
Q  319 aagtggagctggtaaaacaactctaatggatgtgctgtctggaaggaaaacaacaggatat 379  Q
    |||||||||||| ||||| ||| |||||||||||||  | ||||||||||||  |||||||    
T  25523423 aagtggagctgggaaaaccactttaatggatgtgcttgcaggaaggaaaacaggaggatat 25523363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 260 - 468
Target Start/End: Complemental strand, 44223420 - 44223212
Alignment:
Q  260 cttttgacgggtgttaatggagcttttagaccaggagttctgacagctctaatgggtataagtggagctggtaaaacaactctaatggatgtgctgtctg 359  Q
    ||||||| |||||||| ||| || || || || || ||||| |||||| | |||||| ||||||||||||||||||||||||| |||||||| ||| |||    
T  44223420 cttttgaagggtgttagtggtgcattcaggcccggtgttctcacagctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctg 44223321  T
Q  360 gaaggaaaacaacaggatatgttcaaggacaaatcactatatccgggtaccctaagaagcaagaaacatttgctcggatatcaggatactgtgagcaaac 459  Q
    | |||||||||   |||||| || | ||| | ||||   | || ||||||||||| |||||||||||||||||| | || || || ||||||||||| |     
T  44223320 gtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtaccctaaaaagcaagaaacatttgctagaatttctggctactgtgagcagaa 44223221  T
Q  460 tgatatcca 468  Q
    |||||||||    
T  44223220 tgatatcca 44223212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 296 - 453
Target Start/End: Complemental strand, 44211222 - 44211065
Alignment:
Q  296 gttctgacagctctaatgggtataagtggagctggtaaaacaactctaatggatgtgctgtctggaaggaaaacaacaggatatgttcaaggacaaatca 395  Q
    ||||| |||||| | |||||| ||||||||||||||||||||||||| |||||||| ||| |||| |||||||||   |||||| || | ||| | ||||    
T  44211222 gttctcacagctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatca 44211123  T
Q  396 ctatatccgggtaccctaagaagcaagaaacatttgctcggatatcaggatactgtga 453  Q
       | || ||||||||||| |||||||||||||||||| | ||||| || ||||||||    
T  44211122 aggtttctgggtaccctaaaaagcaagaaacatttgctagaatatctggctactgtga 44211065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 311 - 468
Target Start/End: Complemental strand, 44234191 - 44234034
Alignment:
Q  311 atgggtataagtggagctggtaaaacaactctaatggatgtgctgtctggaaggaaaacaacaggatatgttcaaggacaaatcactatatccgggtacc 410  Q
    |||||| ||||||||||||||||||||||||| |||||||| ||| |||| |||||||||   |||||| || | ||| | ||||   | || ||||| |    
T  44234191 atgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtatc 44234092  T
Q  411 ctaagaagcaagaaacatttgctcggatatcaggatactgtgagcaaactgatatcca 468  Q
    |||| |||||||||||||||||| | || || || ||||||||||| | |||||||||    
T  44234091 ctaaaaagcaagaaacatttgctagaatctccggttactgtgagcagaatgatatcca 44234034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 484
Target Start/End: Original strand, 39353429 - 39353645
Alignment:
Q  268 gggtgttaatggagcttttagaccaggagttctgacagctctaatgggtataagtggagctggtaaaacaactctaatggatgtgctgtctggaaggaaa 367  Q
    |||||| | ||||||||| |||||||| ||||| || ||||| ||||| || | ||| ||||| ||||||||||||||||||||||| ||||| || |||    
T  39353429 gggtgtaagtggagctttcagaccaggtgttctcacggctctgatgggcatcactggtgctggaaaaacaactctaatggatgtgctttctggtagaaaa 39353528  T
Q  368 acaacaggatatgttcaaggacaaatcactatatccgggtaccctaagaagcaagaaacatttgctcggatatcaggatactgtgagcaaactgatatcc 467  Q
    ||    |||||| ||   ||  | ||||| || ||||| || || || ||||||||||| |||||  | || || |||||||||||||||||||||||||    
T  39353529 accggtggatatattggtgggaacatcacaatttccggctatccaaaaaagcaagaaacctttgcaagaatttctggatactgtgagcaaactgatatcc 39353628  T
Q  468 actctccctatgctact 484  Q
    | ||||| |||| ||||    
T  39353629 attctccttatgttact 39353645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 260 - 484
Target Start/End: Complemental strand, 39564522 - 39564298
Alignment:
Q  260 cttttgacgggtgttaatggagcttttagaccaggagttctgacagctctaatgggtataagtggagctggtaaaacaactctaatggatgtgctgtctg 359  Q
    ||||||| |||||| | ||||||||| ||||| || ||||| || |||||||||||| | |  || ||||| ||||||||||| ||||||||||| ||||    
T  39564522 cttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctaatgggtgtgaccggtgctggcaaaacaactctgatggatgtgctttctg 39564423  T
Q  360 gaaggaaaacaacaggatatgttcaaggacaaatcactatatccgggtaccctaagaagcaagaaacatttgctcggatatcaggatactgtgagcaaac 459  Q
    | ||||||||   ||||||| ||   ||  | ||||| || ||||| |  || |||||||||||||| |||||  | || || || |||||||||||||     
T  39564422 gtaggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaacctttgcaagaatttctgggtactgtgagcaaaa 39564323  T
Q  460 tgatatccactctccctatgctact 484  Q
    ||||||||||||||| |||| ||||    
T  39564322 tgatatccactctccttatgttact 39564298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 260 - 474
Target Start/End: Original strand, 39338578 - 39338792
Alignment:
Q  260 cttttgacgggtgttaatggagcttttagaccaggagttctgacagctctaatgggtataagtggagctggtaaaacaactctaatggatgtgctgtctg 359  Q
    ||||||| |||||| | ||||||||| |||||||| ||||| || ||||| ||||| || |  || ||||| ||||||||||| ||||||||||| ||||    
T  39338578 cttttgaagggtgtaagtggagctttcagaccaggtgttctcaccgctctgatgggcatcaccggtgctgggaaaacaactctgatggatgtgctttctg 39338677  T
Q  360 gaaggaaaacaacaggatatgttcaaggacaaatcactatatccgggtaccctaagaagcaagaaacatttgctcggatatcaggatactgtgagcaaac 459  Q
    | || |||||    |||||| ||   ||  | ||||  || ||||| |  || |||||||||||||| |||||  | || || |||||||||||||||||    
T  39338678 gtagaaaaactggtggatatattggtgggaacatcaaaatttccggctttccaaagaagcaagaaacctttgcaagaatttctggatactgtgagcaaac 39338777  T
Q  460 tgatatccactctcc 474  Q
    ||||||||| |||||    
T  39338778 tgatatccattctcc 39338792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 268 - 474
Target Start/End: Original strand, 39365939 - 39366145
Alignment:
Q  268 gggtgttaatggagcttttagaccaggagttctgacagctctaatgggtataagtggagctggtaaaacaactctaatggatgtgctgtctggaaggaaa 367  Q
    |||| ||| ||||||||| |||||||| ||||| || ||||| |||||| | |  || ||||| ||||||||||| ||||||||||| ||||| || |||    
T  39365939 gggtcttagtggagctttcagaccaggtgttctcacggctctgatgggtgtgaccggtgctggcaaaacaactctgatggatgtgctttctggtagaaaa 39366038  T
Q  368 acaacaggatatgttcaaggacaaatcactatatccgggtaccctaagaagcaagaaacatttgctcggatatcaggatactgtgagcaaactgatatcc 467  Q
    ||    |||||| ||   ||  | ||||| ||||| || || || |||||||||||||| |||||  | || || |||||||| ||||||||||||||||    
T  39366039 actggtggatatattggtgggaacatcacaatatctggctatccaaagaagcaagaaacctttgcaagaatttctggatactgcgagcaaactgatatcc 39366138  T
Q  468 actctcc 474  Q
    | |||||    
T  39366139 attctcc 39366145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 260 - 474
Target Start/End: Complemental strand, 39547743 - 39547529
Alignment:
Q  260 cttttgacgggtgttaatggagcttttagaccaggagttctgacagctctaatgggtataagtggagctggtaaaacaactctaatggatgtgctgtctg 359  Q
    ||||||| |||||| | ||||||||| ||||| || ||||| || ||||| |||||| | | ||| || || ||||||||||| |||||||| || ||||    
T  39547743 cttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgactggtgcaggcaaaacaactctgatggatgtactttctg 39547644  T
Q  360 gaaggaaaacaacaggatatgttcaaggacaaatcactatatccgggtaccctaagaagcaagaaacatttgctcggatatcaggatactgtgagcaaac 459  Q
    | || |||||    |||||| ||   ||  | ||||| ||||| || || || ||||||||||| || |||||  | || ||||||||||||||||||||    
T  39547643 gtagaaaaactggtggatatattggtgggaacatcacaatatctggctatccaaagaagcaagatacctttgcaagaatttcaggatactgtgagcaaac 39547544  T
Q  460 tgatatccactctcc 474  Q
    ||||||||| |||||    
T  39547543 tgatatccattctcc 39547529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 410 - 474
Target Start/End: Complemental strand, 39589421 - 39589357
Alignment:
Q  410 cctaagaagcaagaaacatttgctcggatatcaggatactgtgagcaaactgatatccactctcc 474  Q
    |||||||||||||||||||||||  | || || |||||||||||||||| |||||||||||||||    
T  39589421 cctaagaagcaagaaacatttgcaagaatttctggatactgtgagcaaaatgatatccactctcc 39589357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 413 - 484
Target Start/End: Complemental strand, 39538132 - 39538061
Alignment:
Q  413 aagaagcaagaaacatttgctcggatatcaggatactgtgagcaaactgatatccactctccctatgctact 484  Q
    ||||||||||| || |||||  | || ||||||||||||||||||||||||||||| ||||| |||| ||||    
T  39538132 aagaagcaagatacctttgcaagaatttcaggatactgtgagcaaactgatatccattctccttatgttact 39538061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 5369833 - 5369869
Alignment:
Q  28 taagcgcttaattaaattgtttattcaaacagggcct 64  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  5369833 taagtgcttaattaaattgtttatccaaacagggcct 5369869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 243 - 351
Target Start/End: Complemental strand, 2149147 - 2149039
Alignment:
Q  243 ctgaagatcgacttgaacttttgacgggtgttaatggagcttttagaccaggagttctgacagctctaatgggtataagtggagctggtaaaacaactct 342  Q
    |||| ||||| || |||||||||| |||||||| ||| ||||||||||| ||||| || |||||| | |||||| ||||||| ||||| || || ||| |    
T  2149147 ctgaggatcgtctcgaacttttgaagggtgttagtggtgcttttagacctggagtactaacagctttgatgggtgtaagtggtgctggaaagactacttt 2149048  T
Q  343 aatggatgt 351  Q
    |||||||||    
T  2149047 aatggatgt 2149039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 248 - 468
Target Start/End: Complemental strand, 2161125 - 2160905
Alignment:
Q  248 gatcgacttgaacttttgacgggtgttaatggagcttttagaccaggagttctgacagctctaatgggtataagtggagctggtaaaacaactctaatgg 347  Q
    ||||| || |||||||||| |||| | ||||| || ||||| || ||||| || || ||| | |||||| ||||||| || || || || ||||||||||    
T  2161125 gatcgtctcgaacttttgaagggtatcaatggcgcctttaggcctggagtactaactgctttgatgggtgtaagtggtgccggaaagactactctaatgg 2161026  T
Q  348 atgtgctgtctggaaggaaaacaacaggatatgttcaaggacaaatcactatatccgggtaccctaagaagcaagaaacatttgctcggatatcaggata 447  Q
    ||||  |  |||||||||||||    |||||| || | ||| | ||||| |||||||| || || ||||| ||| ||||||||||||| ||||| |||||    
T  2161025 atgttttagctggaaggaaaactggtggatatattgatggaaacatcacaatatccggctatccaaagaatcaaaaaacatttgctcgcatatcgggata 2160926  T
Q  448 ctgtgagcaaactgatatcca 468  Q
     || ||||||  |||||||||    
T  2160925 ttgcgagcaatttgatatcca 2160905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 369
Target Start/End: Original strand, 2886877 - 2886987
Alignment:
Q  259 acttttgacgggtgttaatggagcttttagaccaggagttctgacagctctaatgggtataagtggagctggtaaaacaactctaatggatgtgctgtct 358  Q
    |||||||| |||||||| ||| || ||||| || || ||||| |||||  |||||||  | ||||||||||||||||| ||| ||||||||||  || ||    
T  2886877 acttttgaagggtgttagtggtgcatttaggcctggtgttctcacagccttaatgggagttagtggagctggtaaaactactttaatggatgttttggct 2886976  T
Q  359 ggaaggaaaac 369  Q
    || ||||||||    
T  2886977 ggtaggaaaac 2886987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 260 - 369
Target Start/End: Original strand, 2877111 - 2877220
Alignment:
Q  260 cttttgacgggtgttaatggagcttttagaccaggagttctgacagctctaatgggtataagtggagctggtaaaacaactctaatggatgtgctgtctg 359  Q
    ||||||| ||| |||| ||| || |||||||| || ||||| |||||| | |||||| | ||||||||||||||||| ||| | ||||||||  || |||    
T  2877111 cttttgaagggagttagtggtgcatttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctg 2877210  T
Q  360 gaaggaaaac 369  Q
    | ||||||||    
T  2877211 gtaggaaaac 2877220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 351
Target Start/End: Complemental strand, 2897499 - 2897407
Alignment:
Q  259 acttttgacgggtgttaatggagcttttagaccaggagttctgacagctctaatgggtataagtggagctggtaaaacaactctaatggatgt 351  Q
    |||||||| |||||||| ||| || ||||| || || ||||| |||||  |||||||  | ||||||||||||||||| ||| ||||||||||    
T  2897499 acttttgaagggtgttagtggtgcatttaggcctggtgttctcacagcattaatgggagttagtggagctggtaaaactactttaatggatgt 2897407  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 471
Target Start/End: Original strand, 2877258 - 2877322
Alignment:
Q  407 taccctaagaagcaagaaacatttgctcggatatcaggatactgtgagcaaactgatatccactc 471  Q
    |||||||| |||||||||||||||||| | || || || || |||||||| | ||||||||||||    
T  2877258 taccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatccactc 2877322  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 3181228 - 3181260
Alignment:
Q  26 tataagcgcttaattaaattgtttattcaaaca 58  Q
    ||||||||||||||||| |||||||||||||||    
T  3181228 tataagcgcttaattaagttgtttattcaaaca 3181260  T

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