View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6261_low_9 (Length: 399)
Name: NF6261_low_9
Description: NF6261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6261_low_9 |
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| [»] scaffold0393 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 31 - 389
Target Start/End: Complemental strand, 30598834 - 30598458
Alignment:
| Q |
31 |
aagttctggaaccctggcaactaatatagctactaacttactaacatttgcatattcaacaaacatgatgcattagacattttaaggaataatgtataaa |
130 |
Q |
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| T |
30598834 |
aagttctggaaccctggcaactaatataactactaacttactaacatttgcatattcaacaaacatgatgcattaggcattttaaggaataatgtatgaa |
30598735 |
T |
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| Q |
131 |
gttgataaccgccaatgttgaataacaaaagggctatagtttggatagcaacaaagctaattcctcatcagataccttgacttcaatctatgatccaaat |
230 |
Q |
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| T |
30598734 |
gttgataaccgccaatgttgagtaacaaaagggctatagtttggatagcaacaaagctaattcctcatcagataccttgacttcaatctatgatcctaat |
30598635 |
T |
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| Q |
231 |
tatgcagcaa------------------gtttacactgaaaaacacacgcacacatacaatgtacatttattgtatacttcagcttagagtgataagaat |
312 |
Q |
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| T |
30598634 |
tatgcagcaaatcttgcagctaattgatgtttacactgaaaaacacacgcacacatacaatgcacatttattgtatacttcagcttagagtgataagaat |
30598535 |
T |
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| Q |
313 |
gcttataattaattgaataagaaaaataaaaacacaacaagaaagtgtatggccttacacagagttgttcccctttg |
389 |
Q |
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| T |
30598534 |
gcttataattaattgaataagaaaaataaaaacacagcaagaaagtgtatggccttacacagagttgttcccctttg |
30598458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 2411095 - 2410958
Alignment:
| Q |
18 |
acatccagagttcaagttctggaaccctggcaactaatatagctactaacttactaacatttgcatattcaacaaacatgatgcatt-agacattttaag |
116 |
Q |
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| T |
2411095 |
acatccagagtccaagctctggaaccctggaaactaacataactactaa-ttactaacacttgcatatgcaacaaacatgatgcattaaggcattttaag |
2410997 |
T |
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| Q |
117 |
gaataatgtataaagttgataaccgccaatgttgaataa |
155 |
Q |
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| T |
2410996 |
gaataacttatgaaggttttaaccgccaatgttgaataa |
2410958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 2410672 - 2410587
Alignment:
| Q |
157 |
aaaagggctatagtttggatagcaacaaagctaattcctcatcagataccttgacttcaatctatgatccaaattatgcagcaagt |
242 |
Q |
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| T |
2410672 |
aaaagggctatattttagatagcaacaaagctaattcttcatcagataccttgacttcgacgtatgatcctaatgatgcagcaagt |
2410587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 386
Target Start/End: Complemental strand, 2410565 - 2410417
Alignment:
| Q |
246 |
cactgaaaaa-cacacgcacacatacaatgtacatttattgtatacttcagc-ttagagtga---taagaatgcttataattaattgaataagaa-aaat |
339 |
Q |
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| T |
2410565 |
cactgaaaaaacacacacacgcacacaatgcacattgattgtatacttcagcactagaatgatactaagaatgtttataatgaattgaatatgaagaaaa |
2410466 |
T |
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| Q |
340 |
aaaaacacaacaagaaagtg--tatggccttacacagagttgttcccct |
386 |
Q |
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| T |
2410465 |
taaaagacaacaaggaagtgtatatggtcttacacagagttgctcccct |
2410417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 13477 - 13341
Alignment:
| Q |
18 |
acatccagagttcaagttctggaaccctggcaactaatatagctactaacttactaacatttgcatattcaacaaacatgatgcatta-gacattttaag |
116 |
Q |
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|||||||||||||||| |||||||||||| |||||| || ||||| |||||||||||| ||| | ||||||||||||||||||| | |||||||| |
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| T |
13477 |
acatccagagttcaagctctggaaccctgaaaactaacctaactactgacttactaacata--catgtccaacaaacatgatgcattaaggcattttaaa |
13380 |
T |
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| Q |
117 |
gaataatgtataaagttgataaccgccaatgttgaataa |
155 |
Q |
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||||||||||| |||||| |||||||||||||||||||| |
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| T |
13379 |
gaataatgtatgaagttgttaaccgccaatgttgaataa |
13341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 13056 - 12968
Alignment:
| Q |
151 |
aataacaaaagggctatagtttggatagcaacaaa-gctaattcctcatcagataccttgacttcaatctatgatccaaattatgcagc |
238 |
Q |
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||||| |||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||| | |||||||| ||| ||||||| |
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| T |
13056 |
aataataaaagggctatattttagatagcaacaaaagctaattcctcatcagataccttgacttcgacatatgatcctaatgatgcagc |
12968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 386
Target Start/End: Complemental strand, 12877 - 12794
Alignment:
| Q |
306 |
taagaatgcttataattaattgaataagaaaaata-aaaacacaacaagaaagtgtat--ggccttacacagagttgttcccct |
386 |
Q |
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|||||||| ||||||| ||||||||| ||| || | |||| |||||||| |||||||| || |||||||||||||| |||||| |
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| T |
12877 |
taagaatgtttataatgaattgaatatgaagaaaataaaagacaacaaggaagtgtatatggtcttacacagagttgctcccct |
12794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 39960091 - 39960160
Alignment:
| Q |
87 |
caacaaacatgatgcatta-gacattttaaggaataatgtataaagttgataaccgccaatgttgaataa |
155 |
Q |
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|||||||||||||||| || | ||||| || |||||||||||||||||| |||| ||||||||| ||||| |
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| T |
39960091 |
caacaaacatgatgcaataaggcatttgaatgaataatgtataaagttgttaactgccaatgttaaataa |
39960160 |
T |
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