View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6262_high_2 (Length: 237)

Name: NF6262_high_2
Description: NF6262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6262_high_2
NF6262_high_2
[»] chr6 (13 HSPs)
chr6 (8-223)||(5253514-5253731)
chr6 (8-191)||(5065594-5065779)
chr6 (19-188)||(5346005-5346176)
chr6 (33-191)||(5136064-5136221)
chr6 (33-191)||(5126774-5126934)
chr6 (33-191)||(5100963-5101120)
chr6 (19-191)||(5242657-5242831)
chr6 (27-191)||(5438998-5439161)
chr6 (19-188)||(5177715-5177886)
chr6 (19-188)||(5279540-5279711)
chr6 (19-188)||(5689051-5689222)
chr6 (27-185)||(5448596-5448753)
chr6 (27-127)||(5156224-5156321)
[»] chr2 (1 HSPs)
chr2 (24-191)||(22583432-22583601)
[»] chr4 (1 HSPs)
chr4 (22-93)||(4319544-4319615)
[»] chr3 (4 HSPs)
chr3 (27-143)||(47985588-47985701)
chr3 (27-143)||(47994875-47994988)
chr3 (27-143)||(48004162-48004275)
chr3 (27-143)||(48013447-48013560)


Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 5253514 - 5253731
Alignment:
Q  8 agattattctgtaactttcaattgtgaaggttcttctgtatcttttaaagtccctcaattggaagggcgtatgttgaagacaataaagataagcattgtc 107  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5253514 agattcttctgtaactttcaattgtgaaggttcttctgtaccttttaaagtccctcaattggaagggcgtatgttgaagacaataaagataagcattgtc 5253613  T
Q  108 taatcttcaaccccagataacacaacatctgatggcttcacaaatttgttggtaaaaaatt--acaaaggccaccattcagctctaatctcctttgaaga 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  5253614 taatcttcaaccccagataacacaacatctgatggcttcacaaatttgttggtaaaaaattacacaaaggccaccattcagctctaatctcctttgaaga 5253713  T
Q  206 cgaggaggggcagagagt 223  Q
    |||||||||||| |||||    
T  5253714 cgaggaggggcaaagagt 5253731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 8 - 191
Target Start/End: Complemental strand, 5065779 - 5065594
Alignment:
Q  8 agattattctgtaactttcaattgtgaaggttcttctgtatcttttaaagtccctcaattggaagggcgtatgttgaagacaataaagataagcattgtc 107  Q
    ||||| ||||||||||| |||||| ||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||| |||| ||||||||    
T  5065779 agattcttctgtaacttacaattgcgaaggttcttctgtaacttttgaagtccctcaaatgaaagggcgtatgttgaagacaataatgatatgcattgtc 5065680  T
Q  108 taatcttcaaccccagataacacaacatctgatggcttcacaaatttgttggtaaaaaatt--acaaaggccaccattcagctcta 191  Q
    || ||||||||||| ||||||| | ||||||||||| ||||||||||||||||||||||||  |||||  ||||||||||||||||    
T  5065679 tattcttcaaccccggataacatagcatctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctcta 5065594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 5346005 - 5346176
Alignment:
Q  19 taactttcaattgtgaaggttcttctgtatcttttaaagtccctcaattggaagggcgtatgttgaagacaataaagataagcattgtctaatcttcaac 118  Q
    |||||||||||| |||||||||||||||  ||||| |||| |||||| |||||||||| |||||||||||||||| |||| |  ||||||| ||||||||    
T  5346005 taactttcaattctgaaggttcttctgttacttttgaagttcctcaagtggaagggcgaatgttgaagacaataacgatatgtgttgtctattcttcaac 5346104  T
Q  119 cccagataacacaacatctgatggcttcacaaatttgttggtaaaaaatt--acaaaggccaccattcagct 188  Q
      | ||||| | ||||||||||||| | | ||| |||||||| |||||||  |||||||| |||||||||||    
T  5346105 ttcggataatataacatctgatggcctgagaaacttgttggtgaaaaattacacaaaggctaccattcagct 5346176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 33 - 191
Target Start/End: Complemental strand, 5136221 - 5136064
Alignment:
Q  33 gaaggttcttctgtatcttttaaagtccctcaattggaagggcgtatgttgaagacaataaagataagcattgtctaatcttcaaccccagataacacaa 132  Q
    ||||||||||||||| ||||  ||||||||||| ||||||||||||  |||||||||||   |||  ||||||||||  |||||||||||||||||| ||    
T  5136221 gaaggttcttctgtaactttagaagtccctcaagtggaagggcgtaacttgaagacaat---gatgtgcattgtctatacttcaaccccagataacataa 5136125  T
Q  133 catctgatggcttcacaaatttgttggtaaaaaatt--acaaaggccaccattcagctcta 191  Q
    ||||   |||| | | |||| |||||||||||||||  |||||||||||||||||||||||    
T  5136124 catcaagtggccttaaaaatgtgttggtaaaaaattacacaaaggccaccattcagctcta 5136064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 191
Target Start/End: Complemental strand, 5126934 - 5126774
Alignment:
Q  33 gaaggttcttctgtatcttttaaagtccctcaattggaagggcgtatgttgaagacaataaagataagcattgtctaatcttcaaccccagataacacaa 132  Q
    ||||||||||| ||| ||||| |||| |||||| || ||||||||| |||||||| | ||| |||| |||||||||| |||||||||   ||||||| ||    
T  5126934 gaaggttcttcggtaacttttgaagtacctcaagtgaaagggcgtacgttgaagaaagtaatgatatgcattgtctattcttcaaccttggataacataa 5126835  T
Q  133 catctgatggcttcacaaatttgttggtaaaaaattaca--aaggccaccattcagctcta 191  Q
    |||| |||||| | ||||  |||||||| ||||||||||  |||||||||||||| |||||    
T  5126834 catcagatggccttacaagcttgttggtgaaaaattacacgaaggccaccattcaactcta 5126774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 33 - 191
Target Start/End: Complemental strand, 5101120 - 5100963
Alignment:
Q  33 gaaggttcttctgtatcttttaaagtccctcaattggaagggcgtatgttgaagacaataaagataagcattgtctaatcttcaaccccagataacacaa 132  Q
    ||||||||||||||| ||||  ||||||||||| ||||||||||||  |||||||||||   |||  ||||||||||  |||||||||||||||||| ||    
T  5101120 gaaggttcttctgtaactttagaagtccctcaagtggaagggcgtaacttgaagacaat---gatgtgcattgtctatacttcaaccccagataacataa 5101024  T
Q  133 catctgatggcttcacaaatttgttggtaaaaaatt--acaaaggccaccattcagctcta 191  Q
    ||||   |||| | | |||| |||| || |||||||  |||||||||||||||||||||||    
T  5101023 catcaagtggccttaaaaatgtgttagtgaaaaattacacaaaggccaccattcagctcta 5100963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 5242831 - 5242657
Alignment:
Q  19 taactttcaattgtgaaggttcttctgtatcttttaaagtccctcaattggaagggcgtatgttgaagacaataaagataagcattgtctaatcttcaac 118  Q
    |||| ||| ||| |||||||||||||||  ||||| ||||||||||| |||||||||| |||||||||||||||| |||| |   |||||| ||||||||    
T  5242831 taaccttcgattctgaaggttcttctgttacttttgaagtccctcaagtggaagggcgaatgttgaagacaataacgatatgtgctgtctattcttcaac 5242732  T
Q  119 cccagataacacaacatctgatggcttcacaaatttgttggtaaaaaatt--acaaaggccaccattcagctcta 191  Q
      | ||||  | ||||||||||||| |   ||| ||||| || |||||||  |||||||||||||||||||||||    
T  5242731 ttcggatagtataacatctgatggccttggaaacttgttagtgaaaaattacacaaaggccaccattcagctcta 5242657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 191
Target Start/End: Original strand, 5438998 - 5439161
Alignment:
Q  27 aattgtgaaggttcttctgtatcttttaaagtccctcaattggaagggcgtatgttgaagacaataaagataagcattgtctaatcttcaaccccagata 126  Q
    |||| |||||||||||||||| ||||| ||||||||||| ||||||||||||  |||| | || |   |||  |||||||||| |||||||| || ||||    
T  5438998 aattctgaaggttcttctgtaacttttcaagtccctcaagtggaagggcgtaatttgatgtcatt---gatgtgcattgtctattcttcaactccggata 5439094  T
Q  127 acacaacatctgatggcttcacaaatttgttggtaaaaaat--tacaaaggccaccattcagctcta 191  Q
    ||| |||||| ||| || | | |||| | ||||| | ||||   |||||||||||||||||||||||    
T  5439095 acataacatcagatagccttataaatgtattggtgataaatcacacaaaggccaccattcagctcta 5439161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 5177715 - 5177886
Alignment:
Q  19 taactttcaattgtgaaggttcttctgtatcttttaaagtccctcaattggaagggcgtatgttgaagacaataaagataagcattgtctaatcttcaac 118  Q
    |||| |||||||| ||||||||||| |||   ||| ||||||||||| |||||||| | |  || |||||||| | |||| |||||| ||| ||||||||    
T  5177715 taaccttcaattgcgaaggttcttcggtaatgtttgaagtccctcaagtggaagggtgcactttaaagacaatgatgatatgcattgactattcttcaac 5177814  T
Q  119 cccagataacacaacatctgatggcttcacaaatttgttggtaaaaaatt--acaaaggccaccattcagct 188  Q
    ||  ||||| | ||||||  ||||| |  |||| |||||||| || ||||  ||||| ||||||||||||||    
T  5177815 cctggataatataacatcaaatggccttgcaaacttgttggttaagaattacacaaaagccaccattcagct 5177886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 5279540 - 5279711
Alignment:
Q  19 taactttcaattgtgaaggttcttctgtatcttttaaagtccctcaattggaagggcgtatgttgaagacaataaagataagcattgtctaatcttcaac 118  Q
    |||| |||||||| ||||||||||| |||   ||| ||||||||||| |||||||| | |  || |||||| | | |||| |||||| ||| ||||||||    
T  5279540 taaccttcaattgcgaaggttcttcggtaatgtttgaagtccctcaagtggaagggtgcactttaaagacattgatgatatgcattgactattcttcaac 5279639  T
Q  119 cccagataacacaacatctgatggcttcacaaatttgttggtaaaaaatt--acaaaggccaccattcagct 188  Q
    ||  ||||| | ||||||  ||||| |  |||| |||||||| || ||||  ||||| ||||||||||||||    
T  5279640 cctggataatataacatcaaatggccttgcaaacttgttggtgaagaattacacaaaagccaccattcagct 5279711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 5689222 - 5689051
Alignment:
Q  19 taactttcaattgtgaaggttcttctgtatcttttaaagtccctcaattggaagggcgtatgttgaagacaataaagataagcattgtctaatcttcaac 118  Q
    |||| |||||||| ||||||||||| |||   ||| ||||||||||| |||||||||| |  || |||||| | | |||| |||| | ||| ||| ||||    
T  5689222 taaccttcaattgcgaaggttcttcggtaatgtttgaagtccctcaagtggaagggcgcactttaaagacattgatgatatgcatcgactattctacaac 5689123  T
Q  119 cccagataacacaacatctgatggcttcacaaatttgttggtaaaaaatt--acaaaggccaccattcagct 188  Q
    ||  ||||||| ||||||  ||||| |  |||| |||||||| || ||||  ||||| ||||||||||||||    
T  5689122 cctggataacataacatcaaatggccttgcaaacttgttggtgaagaattacacaaaagccaccattcagct 5689051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 185
Target Start/End: Original strand, 5448596 - 5448753
Alignment:
Q  27 aattgtgaaggttcttctgtatcttttaaagtccctcaattggaagggcgtatgttgaagacaataaagataagcattgtctaatcttcaaccccagata 126  Q
    |||| |||||||||||||||| ||||| ||||||||||| |||||| ||||   |||| | || |   |||  ||||||||||  |||||||||||||||    
T  5448596 aattctgaaggttcttctgtaacttttgaagtccctcaagtggaagagcgtcaattgacgtcatt---gatgtgcattgtctatacttcaaccccagata 5448692  T
Q  127 acacaacatctgatggcttcacaaatttgttggtaaaaaatt--acaaaggccaccattca 185  Q
    |   |||||||  |||| | | |||| ||||||| |||||||  |||||||| ||||||||    
T  5448693 atgtaacatctagtggccttaaaaatgtgttggtgaaaaattacacaaaggctaccattca 5448753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 5156321 - 5156224
Alignment:
Q  27 aattgtgaaggttcttctgtatcttttaaagtccctcaattggaagggcgtatgttgaagacaataaagataagcattgtctaatcttcaaccccagata 126  Q
    |||| |||||||||||||||    ||| |||| |||||| ||||||||||||  |||||||||||   |||  ||||||||||  |||||||||||||||    
T  5156321 aattctgaaggttcttctgtgaaatttgaagttcctcaagtggaagggcgtaacttgaagacaat---gatgtgcattgtctatacttcaaccccagata 5156225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 191
Target Start/End: Complemental strand, 22583601 - 22583432
Alignment:
Q  24 ttcaattgtgaaggttcttctgtatcttttaaagtccctcaattggaagggcgtatgttgaagacaataaagataagcattgtctaatcttcaaccccag 123  Q
    ||||||||  |||||||||||||| ||||||||||||||  | || ||||||||||||||||| |||||| |||  |||||||||| ||||||||||| |    
T  22583601 ttcaattgccaaggttcttctgtaacttttaaagtccctgtagtgaaagggcgtatgttgaagtcaataatgatctgcattgtctattcttcaaccccgg 22583502  T
Q  124 ataacacaacatctgatggcttcacaaatttgttggtaaaaaat--tacaaaggccaccattcagctcta 191  Q
    |||||| || ||| ||||||   |||   |||||||| ||||||  ||||||||||||||||||| ||||    
T  22583501 ataacataagatccgatggccctacagccttgttggtgaaaaatcatacaaaggccaccattcagttcta 22583432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 4319615 - 4319544
Alignment:
Q  22 ctttcaattgtgaaggttcttctgtatcttttaaagtccctcaattggaagggcgtatgttgaagacaataa 93  Q
    |||||||||  |||||||||||||||  |||| ||||||||||| ||||||| ||||  |||||||||||||    
T  4319615 ctttcaattcagaaggttcttctgtaatttttgaagtccctcaagtggaaggacgtagcttgaagacaataa 4319544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 47985701 - 47985588
Alignment:
Q  27 aattgtgaaggttcttctgtatcttttaaagtccctcaattggaagggcgtatgttgaagacaataaagataagcattgtctaatcttcaaccccagata 126  Q
    |||| |||||||||||| ||| ||||| ||||||||||| ||||| ||| ||  || ||||||||   |||  ||||||||||  |||||||| |||||     
T  47985701 aattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagacaat---gatgtgcattgtctatacttcaacctcagatg 47985605  T
Q  127 acacaacatctgatggc 143  Q
    ||| |||||| ||||||    
T  47985604 acataacatcagatggc 47985588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 47994988 - 47994875
Alignment:
Q  27 aattgtgaaggttcttctgtatcttttaaagtccctcaattggaagggcgtatgttgaagacaataaagataagcattgtctaatcttcaaccccagata 126  Q
    |||| |||||||||||| ||| ||||| ||||||||||| ||||| ||| ||  || ||||||||   |||  ||||||||||  |||||||| |||||     
T  47994988 aattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagacaat---gatgtgcattgtctatacttcaacctcagatg 47994892  T
Q  127 acacaacatctgatggc 143  Q
    ||| |||||| ||||||    
T  47994891 acataacatcagatggc 47994875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 48004275 - 48004162
Alignment:
Q  27 aattgtgaaggttcttctgtatcttttaaagtccctcaattggaagggcgtatgttgaagacaataaagataagcattgtctaatcttcaaccccagata 126  Q
    |||| |||||||||||| ||| ||||| ||||||||||| ||||| ||| ||  || ||||||||   |||  ||||||||||  |||||||| |||||     
T  48004275 aattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagacaat---gatgtgcattgtctatacttcaacctcagatg 48004179  T
Q  127 acacaacatctgatggc 143  Q
    ||| |||||| ||||||    
T  48004178 acataacatcagatggc 48004162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 48013560 - 48013447
Alignment:
Q  27 aattgtgaaggttcttctgtatcttttaaagtccctcaattggaagggcgtatgttgaagacaataaagataagcattgtctaatcttcaaccccagata 126  Q
    |||| |||||||||||| ||| ||||| ||||||||||| ||||| ||| ||  || ||||||||   |||  ||||||||||  |||||||| |||||     
T  48013560 aattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagacaat---gatgtgcattgtctatacttcaacctcagatg 48013464  T
Q  127 acacaacatctgatggc 143  Q
    ||| |||||| ||||||    
T  48013463 acataacatcagatggc 48013447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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