View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6262_low_1 (Length: 690)

Name: NF6262_low_1
Description: NF6262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6262_low_1
NF6262_low_1
[»] chr8 (19 HSPs)
chr8 (5-335)||(6875136-6875468)
chr8 (336-672)||(6875498-6875814)
chr8 (1-119)||(6864335-6864456)
chr8 (340-402)||(10383913-10383975)
chr8 (356-405)||(20672775-20672824)
chr8 (336-405)||(42215282-42215351)
chr8 (155-257)||(6864478-6864590)
chr8 (336-408)||(7918422-7918494)
chr8 (349-405)||(11183570-11183626)
chr8 (348-408)||(21653103-21653163)
chr8 (336-394)||(32840961-32841020)
chr8 (350-400)||(43704366-43704416)
chr8 (345-410)||(30918133-30918197)
chr8 (336-400)||(926505-926569)
chr8 (339-391)||(3254264-3254316)
chr8 (345-405)||(11569442-11569502)
chr8 (74-142)||(30389163-30389231)
chr8 (155-199)||(42215101-42215145)
chr8 (155-199)||(42215325-42215369)
[»] chr1 (22 HSPs)
chr1 (336-408)||(31517716-31517788)
chr1 (336-408)||(19389923-19389996)
chr1 (349-406)||(6292517-6292574)
chr1 (338-394)||(4481966-4482022)
chr1 (346-402)||(37593670-37593726)
chr1 (345-404)||(4699600-4699659)
chr1 (345-403)||(11639401-11639459)
chr1 (351-408)||(4622115-4622172)
chr1 (155-204)||(32548650-32548699)
chr1 (352-408)||(46252674-46252730)
chr1 (336-391)||(6262777-6262832)
chr1 (336-403)||(10199384-10199451)
chr1 (337-407)||(2777915-2777985)
chr1 (351-405)||(35080060-35080114)
chr1 (345-406)||(6262044-6262105)
chr1 (345-394)||(7119922-7119971)
chr1 (356-405)||(15361065-15361114)
chr1 (340-405)||(35925715-35925780)
chr1 (336-408)||(37473425-37473498)
chr1 (336-405)||(44422724-44422793)
chr1 (345-408)||(15942732-15942796)
chr1 (47-79)||(17420329-17420361)
[»] chr6 (18 HSPs)
chr6 (155-204)||(2455812-2455861)
chr6 (336-410)||(20368156-20368230)
chr6 (65-133)||(31461745-31461813)
chr6 (339-394)||(1575931-1575986)
chr6 (350-408)||(4420665-4420723)
chr6 (339-381)||(26559218-26559260)
chr6 (345-402)||(28641734-28641791)
chr6 (339-408)||(31624112-31624181)
chr6 (338-394)||(33832251-33832307)
chr6 (155-201)||(4420648-4420694)
chr6 (337-406)||(9912167-9912237)
chr6 (156-197)||(2205610-2205651)
chr6 (336-405)||(7945860-7945929)
chr6 (346-391)||(22743520-22743565)
chr6 (46-91)||(30641860-30641905)
chr6 (345-389)||(696483-696527)
chr6 (340-380)||(769188-769228)
chr6 (336-380)||(10616689-10616733)
[»] chr5 (24 HSPs)
chr5 (345-408)||(8089958-8090021)
chr5 (336-402)||(17258859-17258925)
chr5 (336-408)||(12459977-12460049)
chr5 (338-405)||(10125696-10125763)
chr5 (345-408)||(37611200-37611263)
chr5 (345-408)||(37787930-37787993)
chr5 (338-408)||(17368698-17368768)
chr5 (345-391)||(37794683-37794729)
chr5 (349-405)||(6587096-6587152)
chr5 (345-406)||(11615639-11615697)
chr5 (356-402)||(12521556-12521602)
chr5 (155-197)||(33533558-33533600)
chr5 (339-408)||(7674670-7674739)
chr5 (351-400)||(12467163-12467212)
chr5 (345-402)||(32897485-32897542)
chr5 (336-408)||(39105486-39105559)
chr5 (345-405)||(5531060-5531119)
chr5 (155-199)||(11684421-11684465)
chr5 (345-405)||(14295531-14295591)
chr5 (349-405)||(14331392-14331448)
chr5 (340-380)||(37489062-37489102)
chr5 (345-405)||(37526184-37526244)
chr5 (345-405)||(37588345-37588405)
chr5 (345-405)||(37690621-37690681)
[»] chr3 (24 HSPs)
chr3 (338-408)||(50952355-50952425)
chr3 (336-405)||(21574515-21574584)
chr3 (337-405)||(1816608-1816676)
chr3 (350-405)||(3044249-3044304)
chr3 (338-408)||(30573892-30573962)
chr3 (336-408)||(21367689-21367762)
chr3 (337-408)||(24085314-24085386)
chr3 (354-410)||(25925762-25925818)
chr3 (348-408)||(36139900-36139960)
chr3 (348-402)||(36101596-36101650)
chr3 (155-197)||(37273143-37273185)
chr3 (334-408)||(47513675-47513749)
chr3 (336-408)||(402517-402590)
chr3 (345-394)||(5391915-5391964)
chr3 (359-408)||(40665451-40665500)
chr3 (53-102)||(44237521-44237570)
chr3 (339-380)||(45541621-45541662)
chr3 (339-408)||(47249465-47249534)
chr3 (161-201)||(2825152-2825192)
chr3 (161-197)||(22667413-22667449)
chr3 (161-197)||(22724052-22724088)
chr3 (345-405)||(24281072-24281132)
chr3 (345-389)||(39723385-39723429)
chr3 (66-118)||(49605781-49605833)
[»] chr7 (13 HSPs)
chr7 (337-394)||(30535599-30535656)
chr7 (339-394)||(15740390-15740445)
chr7 (345-408)||(25670571-25670634)
chr7 (345-408)||(21247947-21248011)
chr7 (345-405)||(46082061-46082121)
chr7 (339-390)||(11048067-11048118)
chr7 (338-389)||(19719047-19719098)
chr7 (155-197)||(25596042-25596084)
chr7 (345-406)||(36598341-36598402)
chr7 (350-406)||(7244704-7244760)
chr7 (349-389)||(11047908-11047948)
chr7 (338-394)||(36537944-36538000)
chr7 (345-389)||(43219789-43219833)
[»] chr2 (21 HSPs)
chr2 (336-405)||(15120208-15120277)
chr2 (155-197)||(34652055-34652097)
chr2 (336-408)||(16451140-16451213)
chr2 (339-403)||(1647263-1647327)
chr2 (336-408)||(8017456-8017528)
chr2 (338-378)||(16398449-16398489)
chr2 (345-408)||(35379001-35379064)
chr2 (155-197)||(16867748-16867790)
chr2 (336-406)||(28677635-28677705)
chr2 (350-408)||(34652026-34652084)
chr2 (336-408)||(4606947-4607020)
chr2 (338-391)||(13220472-13220525)
chr2 (347-408)||(14451037-14451098)
chr2 (345-397)||(1494431-1494483)
chr2 (336-376)||(1801722-1801762)
chr2 (340-392)||(2091014-2091066)
chr2 (336-408)||(12313149-12313221)
chr2 (343-371)||(15870283-15870311)
chr2 (338-406)||(24347746-24347814)
chr2 (345-408)||(36043926-36043990)
chr2 (266-302)||(43808473-43808509)
[»] scaffold0608 (1 HSPs)
scaffold0608 (338-394)||(9615-9671)
[»] chr4 (14 HSPs)
chr4 (345-405)||(20936214-20936274)
chr4 (336-391)||(22662223-22662278)
chr4 (349-399)||(30631987-30632037)
chr4 (345-402)||(679746-679803)
chr4 (339-408)||(30066745-30066814)
chr4 (337-408)||(17822841-17822913)
chr4 (336-376)||(22666702-22666742)
chr4 (345-380)||(1965991-1966026)
chr4 (345-408)||(2996595-2996658)
chr4 (337-392)||(25571298-25571353)
chr4 (183-226)||(54462156-54462199)
chr4 (337-403)||(1137739-1137805)
chr4 (155-199)||(28300318-28300362)
chr4 (350-402)||(29263398-29263450)


Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 5 - 335
Target Start/End: Original strand, 6875136 - 6875468
Alignment:
Q  5 tagatacccatataaacagcatatatggatcactgagtcatttaaggtcctgtttcaattggtttatttgagtttatctatttgcataagtacttgtgga 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6875136 tagatacccatataaacagcatatatggatcactgagtcatttaaggtcctgtttcaattggtttatttgagtttatctatttgcataagtacttgtgga 6875235  T
Q  105 agtgtttgaaagagcataggaaaatagctaatggcatgcccatnnnnnnntttcaacttatttccttaagctctccaagatagcatatgaaaataac--a 202  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||  |    
T  6875236 agtgtttgaaagagcataggaaaatagctaatggcatgcccataaatttttttcaacttatttccttaagctctccaagatagcatatgaaaataactta 6875335  T
Q  203 tatgaaaatagtttgtctttattttgtcttttatgttacagaaacagcttaggcataactgcgtatatgatacgcgcttatgatataagcacttaattaa 302  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6875336 tatgaaaatagtttgactttattttgtcttttatgttatagaaacagcttaggcataactacgtatatgatacgcgcttatgatataagcacttaattaa 6875435  T
Q  303 gggactgtttgaattggtttatttaagcttatc 335  Q
    |||||||||||||||||||||||||||||||||    
T  6875436 gggactgtttgaattggtttatttaagcttatc 6875468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 336 - 672
Target Start/End: Original strand, 6875498 - 6875814
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaagaaatttgannnnnnnnaaatctttctct 435  Q
    |||||||||||||||||||  ||||||||||||||||||||          |||||||||||||||||||||||||||||        ||||||||||||    
T  6875498 gggagaacatatgaaaacagattatgatatgttcataagct----------tattttcaaaagctctccaagaaatttgatttttt--aaatctttctct 6875585  T
Q  436 atagaaatagctcataggcatacataaacacttatataataagtgtttaagctaagacctgctaagtgcttaattaagtggtttatccaaacatggtctc 535  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||        ||||||||||||||||||||||||||||||||||||||    
T  6875586 atagaaatagctcataggcatacataaacacttatataatgagtgtttaagcta--------taagtgcttaattaagtggtttatccaaacatggtctc 6875677  T
Q  536 ttaatttacctggaaaatcatcatcgccatcatttgctgtggaagtaccttctttttcaagaagatcaggtgcaccataccatttccttaatttaggacc 635  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6875678 ttaatttacctggaaaatcatcatcaccatcatttgctgtggaagtaccttctttttcaagaagatcaggtgcaccataccatttccttaatttaggacc 6875777  T
Q  636 acctaaaaattaaacacagaatcaaaacacaatggtc 672  Q
    |||||||||||||||||||||||||||||||||||||    
T  6875778 acctaaaaattaaacacagaatcaaaacacaatggtc 6875814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 6864335 - 6864456
Alignment:
Q  1 gtattagatacccatataaacagcatatat-ggatcactg--agtcatttaaggtcctgtttcaattggtttatttgagtttatctatttgcataagtac 97  Q
    |||||||||||||||||||||||||| | | |||||||||  |||||||| |||| |||||||||||||||||||||||| |||||||||||||||| ||    
T  6864335 gtattagatacccatataaacagcattttttggatcactgtgagtcattttaggttctgtttcaattggtttatttgagtctatctatttgcataagcac 6864434  T
Q  98 ttgtggaagtgtttgaaagagc 119  Q
    ||  | ||||||||| ||||||    
T  6864435 ttaagaaagtgtttggaagagc 6864456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 340 - 402
Target Start/End: Complemental strand, 10383975 - 10383913
Alignment:
Q  340 gaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctct 402  Q
    |||| |||||||||| ||||||| || ||||||||||||||| ||||||||| || |||||||    
T  10383975 gaacttatgaaaacagcttatgacattttcataagctgtttacagcttatttccataagctct 10383913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 405
Target Start/End: Complemental strand, 20672824 - 20672775
Alignment:
Q  356 cttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 405  Q
    ||||||| |||||||||||||||||  |||||||||||| ||||||||||    
T  20672824 cttatgacatgttcataagctgttttcagcttattttcataagctctcca 20672775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 336 - 405
Target Start/End: Original strand, 42215282 - 42215351
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 405  Q
    ||||||||  ||||||||| |||||||  ||||||||||||||||  ||||||||| || ||||||||||    
T  42215282 gggagaactaatgaaaacagcttatgacttgttcataagctgttttcagcttatttacataagctctcca 42215351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 6864478 - 6864590
Alignment:
Q  155 tttcaacttatttccttaagctctccaagatagcatatgaaaataacatat---------gaaaatagtttgtctttattttgt-cttttatgttacaga 244  Q
    ||||| |||||||||| ||||||||||| ||||| |||||||| ||| |||         |||||||||||| ||||||||| | ||||||||||| |||    
T  6864478 tttcagcttatttcctcaagctctccaaaatagcttatgaaaacaacttataacttacatgaaaatagtttgactttattttatccttttatgttataga 6864577  T
Q  245 aacagcttaggca 257  Q
    || ||||||||||    
T  6864578 aatagcttaggca 6864590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 336 - 408
Target Start/End: Original strand, 7918422 - 7918494
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||||| | ||||||||||||||| || |||||||||||||||||  | |||||||  | |||||||||||||    
T  7918422 gggagagcttatgaaaacaacttaagacatgttcataagctgtttccaacttatttcaataagctctccaaga 7918494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 349 - 405
Target Start/End: Complemental strand, 11183626 - 11183570
Alignment:
Q  349 aaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 405  Q
    |||||||||||||||||||  |||||||||||  ||||||||| || ||||||||||    
T  11183626 aaaacaacttatgatatgtctataagctgttttcagcttatttccataagctctcca 11183570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 348 - 408
Target Start/End: Complemental strand, 21653163 - 21653103
Alignment:
Q  348 gaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||| |||||||||| | ||||||||||| |||  |||||||||||| |||||||||||||    
T  21653163 gaaatcaacttatgacacgttcataagctattttcagcttattttcataagctctccaaga 21653103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 336 - 394
Target Start/End: Original strand, 32840961 - 32841020
Alignment:
Q  336 gggagaacatatgaaaacaacttatgata-tgttcataagctgtttaaagcttattttca 394  Q
    |||||||| |||||||||||||||||| | |||||||||| |||||  ||||||||||||    
T  32840961 gggagaacttatgaaaacaacttatgacattgttcataagttgttttcagcttattttca 32841020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 350 - 400
Target Start/End: Original strand, 43704366 - 43704416
Alignment:
Q  350 aaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagct 400  Q
    ||||||||||||| |||||||||| |||||| |||||||||| || |||||    
T  43704366 aaacaacttatgacatgttcataaactgttttaagcttatttccataagct 43704416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 410
Target Start/End: Complemental strand, 30918197 - 30918133
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaagaaa 410  Q
    |||||||||||||| ||| || |||||||| |||||  ||||||||| || |||||||||||||||    
T  30918197 tatgaaaacaacttgtgacat-ttcataagttgttttcagcttatttccataagctctccaagaaa 30918133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 336 - 400
Target Start/End: Complemental strand, 926569 - 926505
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagct 400  Q
    |||||||  ||| |||||||||||||| |||||||||||| ||||  ||||||||| || |||||    
T  926569 gggagaatttatcaaaacaacttatgacatgttcataagccgttttcagcttatttccacaagct 926505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 3254316 - 3254264
Alignment:
Q  339 agaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattt 391  Q
    ||||| || ||||||| ||||||| |||||||||||||||||  |||||||||    
T  3254316 agaacttaagaaaacagcttatgacatgttcataagctgttttcagcttattt 3254264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 11569442 - 11569502
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 405  Q
    |||| ||||| ||||||| |||| |||||| |||||  ||||||||||||||| |||||||    
T  11569442 tatggaaacagcttatgacatgtacataagttgttttcagcttattttcaaaatctctcca 11569502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 30389231 - 30389163
Alignment:
Q  74 gagtttatctatttgcataagtacttgtggaagtgtttgaaagagcataggaaaatagctaatggcatg 142  Q
    ||||||| ||| | ||||||||||| |||  | ||||||| |||||||| |||||||||||||| ||||    
T  30389231 gagtttaactactggcataagtactcgtgacactgtttgagagagcatatgaaaatagctaatgacatg 30389163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 42215101 - 42215145
Alignment:
Q  155 tttcaacttatttccttaagctctccaagatagcatatgaaaata 199  Q
    ||||| ||||||| | |||||||||||||||||| ||||||||||    
T  42215101 tttcagcttatttacataagctctccaagatagcttatgaaaata 42215145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 42215325 - 42215369
Alignment:
Q  155 tttcaacttatttccttaagctctccaagatagcatatgaaaata 199  Q
    ||||| ||||||| | ||||||||||| |||||||||||||||||    
T  42215325 tttcagcttatttacataagctctccaggatagcatatgaaaata 42215369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 336 - 408
Target Start/End: Original strand, 31517716 - 31517788
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||||||| ||| ||||||||| |||| |||||||||||||||||  |||||||||||| |||||||||||||    
T  31517716 gggagaacttatcaaaacaactcatgacatgttcataagctgttttcagcttattttcataagctctccaaga 31517788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 19389996 - 19389923
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatatgttcataagctg-tttaaagcttattttcaaaagctctccaaga 408  Q
    |||||||| |||||||| ||||||||||||||||||||| || |||  |||||||||||| |||||||||||||    
T  19389996 gggagaacgtatgaaaaaaacttatgatatgttcataagttgttttttagcttattttcacaagctctccaaga 19389923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 349 - 406
Target Start/End: Complemental strand, 6292574 - 6292517
Alignment:
Q  349 aaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaa 406  Q
    |||||| ||||||| |||||||||||||||||  |||||||||||| |||||||||||    
T  6292574 aaaacagcttatgacatgttcataagctgttttcagcttattttcataagctctccaa 6292517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 338 - 394
Target Start/End: Complemental strand, 4482022 - 4481966
Alignment:
Q  338 gagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttca 394  Q
    |||||| |||||||||||||||| | |||||||||||||||||  ||||||||||||    
T  4482022 gagaacttatgaaaacaacttattacatgttcataagctgtttttagcttattttca 4481966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 346 - 402
Target Start/End: Original strand, 37593670 - 37593726
Alignment:
Q  346 atgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctct 402  Q
    ||||| ||||||||||| |||||||||||||||||  |||||||||||| |||||||    
T  37593670 atgaacacaacttatgacatgttcataagctgttttcagcttattttcataagctct 37593726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 345 - 404
Target Start/End: Original strand, 4699600 - 4699659
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcc 404  Q
    |||||||||||||||||| |||||||||||||||||  |||||||||  | |||||||||    
T  4699600 tatgaaaacaacttatgacatgttcataagctgtttttagcttatttctataagctctcc 4699659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 345 - 403
Target Start/End: Original strand, 11639401 - 11639459
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctc 403  Q
    |||||||||| ||||||| |||| ||||||||||||  |||||||||||| ||||||||    
T  11639401 tatgaaaacagcttatgacatgtccataagctgtttttagcttattttcataagctctc 11639459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 4622172 - 4622115
Alignment:
Q  351 aacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||| ||||||| |||| ||||||||||||  |||||||||||| |||||||||||||    
T  4622172 aacatcttatgacatgtccataagctgtttttagcttattttcacaagctctccaaga 4622115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 32548650 - 32548699
Alignment:
Q  155 tttcaacttatttccttaagctctccaagatagcatatgaaaataacata 204  Q
    ||||||||||||||| ||||||| |||||||||| |||||||| ||||||    
T  32548650 tttcaacttatttccataagctccccaagatagcttatgaaaacaacata 32548699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 352 - 408
Target Start/End: Original strand, 46252674 - 46252730
Alignment:
Q  352 acaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    ||||||||||| ||||||||||| |||||  || ||||||||| |||||||||||||    
T  46252674 acaacttatgacatgttcataagttgttttcaggttattttcataagctctccaaga 46252730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 336 - 391
Target Start/End: Complemental strand, 6262832 - 6262777
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattt 391  Q
    |||||| | |||||||| |||||||||||||| |||||| ||||| ||||||||||    
T  6262832 gggagagcttatgaaaataacttatgatatgtccataagttgttttaagcttattt 6262777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 336 - 403
Target Start/End: Original strand, 10199384 - 10199451
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctc 403  Q
    ||||||||  ||||||| | ||||||| ||||||||||| |||||  |||||||||||| ||||||||    
T  10199384 gggagaactcatgaaaatagcttatgacatgttcataagttgttttcagcttattttcataagctctc 10199451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 407
Target Start/End: Complemental strand, 2777985 - 2777915
Alignment:
Q  337 ggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaag 407  Q
    ||||||| ||||||| ||||||||||  | ||||||||| ||||  |||||||||||| ||| ||||||||    
T  2777985 ggagaacttatgaaaccaacttatgacgtattcataagccgttttcagcttattttcataagttctccaag 2777915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 351 - 405
Target Start/End: Original strand, 35080060 - 35080114
Alignment:
Q  351 aacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 405  Q
    |||||||||||| |||||||||||||||||  |||||||||  | ||||||||||    
T  35080060 aacaacttatgacatgttcataagctgttttgagcttatttcgacaagctctcca 35080114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 6262105 - 6262044
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaa 406  Q
    ||||| |||||||||||| ||||||||||||| |||  | ||||||| || |||||||||||    
T  6262105 tatgagaacaacttatgacatgttcataagctattttcaacttatttccacaagctctccaa 6262044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 394
Target Start/End: Original strand, 7119922 - 7119971
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttca 394  Q
    ||||||||||||||||||||| ||||||||||| ||  ||||||| ||||    
T  7119922 tatgaaaacaacttatgatatcttcataagctgctttcagcttatattca 7119971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 405
Target Start/End: Complemental strand, 15361114 - 15361065
Alignment:
Q  356 cttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 405  Q
    |||||| |||||||||||| |||||  |||||||||||| ||||||||||    
T  15361114 cttatgctatgttcataagttgttttcagcttattttcataagctctcca 15361065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 35925780 - 35925715
Alignment:
Q  340 gaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 405  Q
    |||| |||||||||| ||||||| |||||||||||||||||  | ||||||| || || |||||||    
T  35925780 gaacttatgaaaacagcttatgacatgttcataagctgttttcaacttatttccataaactctcca 35925715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 37473498 - 37473425
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatatgtt-cataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||||||| | |||||||||||||||| || || |||||||| |||  |||||||||||| ||| |||||||||    
T  37473498 gggagaacttttgaaaacaacttatgacatttttcataagctttttccagcttattttcataagttctccaaga 37473425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 405
Target Start/End: Complemental strand, 44422793 - 44422724
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 405  Q
    |||||| | |||||||| | ||||||| |||| |||||||||  || |||||||||||| ||||||||||    
T  44422793 gggagagcttatgaaaatagcttatgacatgtccataagctgactacagcttattttcataagctctcca 44422724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 345 - 408
Target Start/End: Original strand, 15942732 - 15942796
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagc-tgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||||||||||||||||| |||||||||||| |||||  |||||||||  | ||| |||||||||    
T  15942732 tatgaaaacaacttatgacatgttcataagcatgttttcagcttatttcaataagttctccaaga 15942796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 17420361 - 17420329
Alignment:
Q  47 taaggtcctgtttcaattggtttatttgagttt 79  Q
    ||||| |||||||||||||||||||||||||||    
T  17420361 taagggcctgtttcaattggtttatttgagttt 17420329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 2455861 - 2455812
Alignment:
Q  155 tttcaacttatttccttaagctctccaagatagcatatgaaaataacata 204  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  2455861 tttcaacttatttccataagctctccaagatagcttatgaaaataacata 2455812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 336 - 410
Target Start/End: Original strand, 20368156 - 20368230
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatatgttcataagct-gtttaaagcttattttcaaaagctctccaagaaa 410  Q
    |||||||| |||||||||||||||||| ||||||||||||| |||| || |||||||||| ||| |||||||||||    
T  20368156 gggagaacttatgaaaacaacttatgacatgttcataagctagtttcaa-cttattttcataagttctccaagaaa 20368230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 133
Target Start/End: Complemental strand, 31461813 - 31461745
Alignment:
Q  65 ggtttatttgagtttatctatttgcataagtacttgtggaagtgtttgaaagagcataggaaaatagct 133  Q
    |||||||||||| |||||||||||||||||||||||||  | |||| | |||||| || ||||||||||    
T  31461813 ggtttatttgagcttatctatttgcataagtacttgtgagactgttcgcaagagcttacgaaaatagct 31461745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 339 - 394
Target Start/End: Complemental strand, 1575986 - 1575931
Alignment:
Q  339 agaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttca 394  Q
    ||||| |||||||||||||||||| |||||||||||||||||  | ||||||||||    
T  1575986 agaacttatgaaaacaacttatgacatgttcataagctgtttttaacttattttca 1575931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 350 - 408
Target Start/End: Complemental strand, 4420723 - 4420665
Alignment:
Q  350 aaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||||| |||||| |||||||||||||||||  ||||||||| || |||||||||||||    
T  4420723 aaacaaattatgacatgttcataagctgttttcagcttatttccataagctctccaaga 4420665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 339 - 381
Target Start/End: Original strand, 26559218 - 26559260
Alignment:
Q  339 agaacatatgaaaacaacttatgatatgttcataagctgttta 381  Q
    ||||| |||||||||||||||||||||||||| ||||||||||    
T  26559218 agaacttatgaaaacaacttatgatatgttcacaagctgttta 26559260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 345 - 402
Target Start/End: Original strand, 28641734 - 28641791
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctct 402  Q
    |||||||||| ||||| | |||||||||||||||||  |||||||||||| |||||||    
T  28641734 tatgaaaacagcttataacatgttcataagctgtttttagcttattttcataagctct 28641791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 339 - 408
Target Start/End: Complemental strand, 31624181 - 31624112
Alignment:
Q  339 agaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    ||||| |||||||||| ||||||| |||||||||||||||||  | |||||||||| ||  |||||||||    
T  31624181 agaacttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcataatttctccaaga 31624112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 338 - 394
Target Start/End: Original strand, 33832251 - 33832307
Alignment:
Q  338 gagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttca 394  Q
    |||||| |||||||||||||||||| ||||| ||||| |||||  ||||||||||||    
T  33832251 gagaacttatgaaaacaacttatgacatgtttataagttgtttttagcttattttca 33832307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 4420694 - 4420648
Alignment:
Q  155 tttcaacttatttccttaagctctccaagatagcatatgaaaataac 201  Q
    ||||| ||||||||| |||||||||||||||||| || |||||||||    
T  4420694 tttcagcttatttccataagctctccaagatagcttaggaaaataac 4420648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 406
Target Start/End: Original strand, 9912167 - 9912237
Alignment:
Q  337 ggagaacatatgaaaacaacttatgatat-gttcataagctgtttaaagcttattttcaaaagctctccaa 406  Q
    ||||||| ||||||| || ||||||| || |||||||||||||||  |||||||||||| ||| |||||||    
T  9912167 ggagaacttatgaaaccagcttatgacattgttcataagctgttttgagcttattttcataagttctccaa 9912237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 2205610 - 2205651
Alignment:
Q  156 ttcaacttatttccttaagctctccaagatagcatatgaaaa 197  Q
    |||| ||||||||| |||||||||||||||||| ||||||||    
T  2205610 ttcagcttatttccataagctctccaagatagcttatgaaaa 2205651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 405
Target Start/End: Original strand, 7945860 - 7945929
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 405  Q
    |||||||  |||||||||||||||||  ||||| || || ||||| |||||||||| || ||||||||||    
T  7945860 gggagaaattatgaaaacaacttatggcatgtttattagttgttttaagcttatttccataagctctcca 7945929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 391
Target Start/End: Complemental strand, 22743565 - 22743520
Alignment:
Q  346 atgaaaacaacttatgatatgttcataagctgtttaaagcttattt 391  Q
    ||||||||||||||| | |||||||||||||||||  |||||||||    
T  22743565 atgaaaacaacttattacatgttcataagctgttttcagcttattt 22743520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 30641905 - 30641860
Alignment:
Q  46 ttaaggtcctgtttcaattggtttatttgagtttatctatttgcat 91  Q
    |||||| ||||||| |||||| |||||||||||||||||| |||||    
T  30641905 ttaagggcctgtttgaattggcttatttgagtttatctatatgcat 30641860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 345 - 389
Target Start/End: Complemental strand, 696527 - 696483
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttat 389  Q
    |||||||||| ||||||| |||||||||||||||||  |||||||    
T  696527 tatgaaaacagcttatgacatgttcataagctgtttttagcttat 696483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 340 - 380
Target Start/End: Complemental strand, 769228 - 769188
Alignment:
Q  340 gaacatatgaaaacaacttatgatatgttcataagctgttt 380  Q
    |||| |||||||||| ||||||| |||||||||||||||||    
T  769228 gaacttatgaaaacatcttatgacatgttcataagctgttt 769188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 336 - 380
Target Start/End: Original strand, 10616689 - 10616733
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatatgttcataagctgttt 380  Q
    |||||||| ||| |||||| ||||||| |||||||||||||||||    
T  10616689 gggagaacttatcaaaacaccttatgacatgttcataagctgttt 10616733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 345 - 408
Target Start/End: Complemental strand, 8090021 - 8089958
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    ||||||||||||||||||||| ||| ||||||||||  |||||||||||| ||||||| |||||    
T  8090021 tatgaaaacaacttatgatatattcctaagctgttttcagcttattttcataagctcttcaaga 8089958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 336 - 402
Target Start/End: Original strand, 17258859 - 17258925
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctct 402  Q
    |||||||| |||||||| | ||||||| |||||||||||||||||  |||||||||||| |||||||    
T  17258859 gggagaacctatgaaaatagcttatgacatgttcataagctgttttcagcttattttcataagctct 17258925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 336 - 408
Target Start/End: Original strand, 12459977 - 12460049
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||||||| |||||||||||||||||| ||||||||| | |||||   ||||||||||| ||||||| |||||    
T  12459977 gggagaacctatgaaaacaacttatgacatgttcatatgttgtttttggcttattttcataagctctgcaaga 12460049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 338 - 405
Target Start/End: Original strand, 10125696 - 10125763
Alignment:
Q  338 gagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 405  Q
    |||||| |||| ||||||||||||| ||||| ||||| |||||  |||||||||||| ||||||||||    
T  10125696 gagaacttatgtaaacaacttatgacatgttgataaggtgttttcagcttattttcataagctctcca 10125763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 345 - 408
Target Start/End: Original strand, 37611200 - 37611263
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||||||||||||| ||| |||||||||||||||||  || |||||| || |||||||||||||    
T  37611200 tatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctctccaaga 37611263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 345 - 408
Target Start/End: Original strand, 37787930 - 37787993
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||||||||||||| ||| |||||||||||||||||  || |||||| || |||||||||||||    
T  37787930 tatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctctccaaga 37787993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 338 - 408
Target Start/End: Complemental strand, 17368768 - 17368698
Alignment:
Q  338 gagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||||| |||||||||||||||||| ||||||||| || ||||  ||||||||| || || ||||||||||    
T  17368768 gagaacttatgaaaacaacttatgacatgttcatatgcagttttcagcttatttccataacctctccaaga 17368698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 37794683 - 37794729
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattt 391  Q
    |||||||||||||||||| |||||||||||||||||  |||||||||    
T  37794683 tatgaaaacaacttatgacatgttcataagctgttttgagcttattt 37794729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 349 - 405
Target Start/End: Original strand, 6587096 - 6587152
Alignment:
Q  349 aaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 405  Q
    |||||| ||||||| | |||||||||||||||| |||||||||||| ||| ||||||    
T  6587096 aaaacagcttatgacaggttcataagctgtttacagcttattttcacaagttctcca 6587152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 11615639 - 11615697
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaa 406  Q
    |||||||||||||||||| | |||||| ||||||||   ||||||||||| |||||||||||    
T  11615639 tatgaaaacaacttatgacacgttcattagctgttt---gcttattttcataagctctccaa 11615697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 356 - 402
Target Start/End: Complemental strand, 12521602 - 12521556
Alignment:
Q  356 cttatgatatgttcataagctgtttaaagcttattttcaaaagctct 402  Q
    |||||||||||||||||||||||||  ||||||||| || |||||||    
T  12521602 cttatgatatgttcataagctgttttcagcttatttccataagctct 12521556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 33533558 - 33533600
Alignment:
Q  155 tttcaacttatttccttaagctctccaagatagcatatgaaaa 197  Q
    ||||||||||||||| |||||||||||||||||| | ||||||    
T  33533558 tttcaacttatttccataagctctccaagatagcttgtgaaaa 33533600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 408
Target Start/End: Complemental strand, 7674739 - 7674670
Alignment:
Q  339 agaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    ||||| |||| ||||||||||||| ||||| ||||| |||||  |||||||||||| ||  |||||||||    
T  7674739 agaacttatggaaacaacttatgacatgtttataaggtgttttcagcttattttcacaaattctccaaga 7674670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 400
Target Start/End: Complemental strand, 12467212 - 12467163
Alignment:
Q  351 aacaacttatgatatgttcataagctgtttaaagcttattttcaaaagct 400  Q
    |||||||||||| ||||| |||||||||||  |||||||||||| |||||    
T  12467212 aacaacttatgacatgtttataagctgttttcagcttattttcataagct 12467163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 402
Target Start/End: Complemental strand, 32897542 - 32897485
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctct 402  Q
    |||| |||||||||||||||| ||||||| ||||||   ||||||||||| |||||||    
T  32897542 tatggaaacaacttatgatattttcataacctgttttctgcttattttcataagctct 32897485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 39105559 - 39105486
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatat-gttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||||||  |||||||||| ||||||| || ||||||||||| |||  |||||||||||| ||| |||||||||    
T  39105559 gggagaatttatgaaaacagcttatgacattgttcataagctatttttagcttattttcataagttctccaaga 39105486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 5531119 - 5531060
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 405  Q
    ||||||||||||||||||||||| |||||| |||||  | ||||||| || ||||||||||    
T  5531119 tatgaaaacaacttatgatatgtccataagttgttttta-cttatttccagaagctctcca 5531060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 11684465 - 11684421
Alignment:
Q  155 tttcaacttatttccttaagctctccaagatagcatatgaaaata 199  Q
    ||||||||||||||| |||||||||||  ||||| ||||||||||    
T  11684465 tttcaacttatttccgtaagctctccagcatagcttatgaaaata 11684421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 14295591 - 14295531
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 405  Q
    |||||||||| ||||||||||||  |||||||||||  |||||| ||  ||||||||||||    
T  14295591 tatgaaaacagcttatgatatgtcgataagctgttttcagcttacttctaaaagctctcca 14295531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 349 - 405
Target Start/End: Complemental strand, 14331448 - 14331392
Alignment:
Q  349 aaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 405  Q
    |||||| ||||||| |||| ||||||||| ||  |||||||||||| ||||||||||    
T  14331448 aaaacagcttatgacatgtccataagctgatttcagcttattttcataagctctcca 14331392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 340 - 380
Target Start/End: Original strand, 37489062 - 37489102
Alignment:
Q  340 gaacatatgaaaacaacttatgatatgttcataagctgttt 380  Q
    |||| |||||||||||||||||| ||||| |||||||||||    
T  37489062 gaacttatgaaaacaacttatgacatgttgataagctgttt 37489102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 37526184 - 37526244
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 405  Q
    |||||| ||||| ||||| ||||| |||||||||||  ||||||||| || ||||||||||    
T  37526184 tatgaatacaacctatgacatgttaataagctgttttcagcttatttccataagctctcca 37526244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 37588345 - 37588405
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 405  Q
    |||||| ||||| ||||| ||||| |||||||||||  ||||||||| || ||||||||||    
T  37588345 tatgaatacaacctatgaaatgttaataagctgttttcagcttatttccataagctctcca 37588405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 37690621 - 37690681
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 405  Q
    |||||| ||||| ||||| ||||| |||||||||||  ||||||||| || ||||||||||    
T  37690621 tatgaatacaacctatgacatgttaataagctgttttcagcttatttccataagctctcca 37690681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 338 - 408
Target Start/End: Complemental strand, 50952425 - 50952355
Alignment:
Q  338 gagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||||| || ||||||| ||||||| |||||||||| |||||| |||||||||| || |||||||||||||    
T  50952425 gagaacgtacgaaaacagcttatgacatgttcataaactgttttaagcttatttccataagctctccaaga 50952355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 336 - 405
Target Start/End: Complemental strand, 21574584 - 21574515
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 405  Q
    |||||| | |||||||||||||||||| |||||||||||||| ||  ||||||||| || ||||||||||    
T  21574584 gggagagcttatgaaaacaacttatgacatgttcataagctgcttttagcttatttccataagctctcca 21574515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 337 - 405
Target Start/End: Complemental strand, 1816676 - 1816608
Alignment:
Q  337 ggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 405  Q
    |||||||||||||||| ||||||||| || |||||| |||||||  |||||||||| | ||||||||||    
T  1816676 ggagaacatatgaaaataacttatgacattttcataggctgttttcagcttattttgataagctctcca 1816608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 350 - 405
Target Start/End: Original strand, 3044249 - 3044304
Alignment:
Q  350 aaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 405  Q
    ||||||||||||| |||||||||||||||||  | |||||||||| ||||||||||    
T  3044249 aaacaacttatgacatgttcataagctgttttcaacttattttcataagctctcca 3044304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 338 - 408
Target Start/End: Original strand, 30573892 - 30573962
Alignment:
Q  338 gagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||||| ||||||||||| |||||  |||||||||||||||||  ||||||| ||||  ||||||||||||    
T  30573892 gagaacttatgaaaacaaattatggcatgttcataagctgttttcagcttatgttcatcagctctccaaga 30573962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 21367762 - 21367689
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatat-gttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||||||| |||||||||| ||||||| || ||||| |||||||||  |||||||||||| ||| |||||||||    
T  21367762 gggagaacttatgaaaacagcttatgacattgttcacaagctgttttcagcttattttcataagttctccaaga 21367689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 337 - 408
Target Start/End: Original strand, 24085314 - 24085386
Alignment:
Q  337 ggagaacatatgaaaacaacttatgata-tgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    ||||||| |||||||||| |||||| || |||||||| |||||||  |||||||||||| ||| |||||||||    
T  24085314 ggagaacttatgaaaacagcttatggtactgttcatacgctgttttcagcttattttcacaagttctccaaga 24085386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 354 - 410
Target Start/End: Complemental strand, 25925818 - 25925762
Alignment:
Q  354 aacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaagaaa 410  Q
    ||||||||| |||||||||||||||||  | |||||||||| |||||||||| ||||    
T  25925818 aacttatgacatgttcataagctgttttcaacttattttcataagctctccaggaaa 25925762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 348 - 408
Target Start/End: Complemental strand, 36139960 - 36139900
Alignment:
Q  348 gaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    ||||||| ||||||| ||||||| |||||||||  |||||||||||| ||||||| |||||    
T  36139960 gaaaacagcttatgacatgttcacaagctgttttcagcttattttcataagctcttcaaga 36139900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 348 - 402
Target Start/End: Complemental strand, 36101650 - 36101596
Alignment:
Q  348 gaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctct 402  Q
    ||||||| ||||||| ||||||| |||||||||  |||||||||||| |||||||    
T  36101650 gaaaacagcttatgacatgttcacaagctgttttcagcttattttcataagctct 36101596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 37273185 - 37273143
Alignment:
Q  155 tttcaacttatttccttaagctctccaagatagcatatgaaaa 197  Q
    ||||||||||||||| |||| ||||||||||||| ||||||||    
T  37273185 tttcaacttatttccataagttctccaagatagcttatgaaaa 37273143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 334 - 408
Target Start/End: Complemental strand, 47513749 - 47513675
Alignment:
Q  334 tcgggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    ||||||| || ||||||||||| |||||| | ||||||||| |||||  |  ||||||||| |||||||||||||    
T  47513749 tcgggaggacttatgaaaacaagttatgacacgttcataagttgttttcaatttattttcataagctctccaaga 47513675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 408
Target Start/End: Original strand, 402517 - 402590
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatat-gttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||||||| |||||||||| ||||||| || |||||||||||||||  |||||| ||||| ||| ||| |||||    
T  402517 gggagaacgtatgaaaacagcttatgacattgttcataagctgttttcagcttaatttcacaagttcttcaaga 402590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 394
Target Start/End: Complemental strand, 5391964 - 5391915
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttca 394  Q
    |||||||||| ||||||| |||||||||||||||||  | ||||||||||    
T  5391964 tatgaaaacagcttatgacatgttcataagctgttttcaacttattttca 5391915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 408
Target Start/End: Complemental strand, 40665500 - 40665451
Alignment:
Q  359 atgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||| |||||||||||||||||  |||||||||| | |||||||||||||    
T  40665500 atgacatgttcataagctgttttcagcttatttttataagctctccaaga 40665451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 44237570 - 44237521
Alignment:
Q  53 cctgtttcaattggtttatttgagtttatctatttgcataagtacttgtg 102  Q
    ||||||| |||||||||||||||||||||||| |  |||||| |||||||    
T  44237570 cctgtttaaattggtttatttgagtttatctactgacataagcacttgtg 44237521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 45541662 - 45541621
Alignment:
Q  339 agaacatatgaaaacaacttatgatatgttcataagctgttt 380  Q
    ||||| |||||||||| ||||||| |||||||||||||||||    
T  45541662 agaacttatgaaaacagcttatgacatgttcataagctgttt 45541621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 408
Target Start/End: Original strand, 47249465 - 47249534
Alignment:
Q  339 agaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    ||||| ||||||||| |||||||| ||||||||||| |||||   ||||||||||| |||  ||||||||    
T  47249465 agaacttatgaaaaccacttatgacatgttcataagttgtttttggcttattttcataagtcctccaaga 47249534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 2825192 - 2825152
Alignment:
Q  161 cttatttccttaagctctccaagatagcatatgaaaataac 201  Q
    ||||||| | |||||||||||||||||| ||||||||||||    
T  2825192 cttattttcataagctctccaagatagcttatgaaaataac 2825152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 22667449 - 22667413
Alignment:
Q  161 cttatttccttaagctctccaagatagcatatgaaaa 197  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  22667449 cttatttccgtaagctctccaagatagcttatgaaaa 22667413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 22724088 - 22724052
Alignment:
Q  161 cttatttccttaagctctccaagatagcatatgaaaa 197  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  22724088 cttatttccgtaagctctccaagatagcttatgaaaa 22724052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 24281132 - 24281072
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 405  Q
    ||||||||||||||||||||| | |||||| |||||  | |||| ||||| ||||||||||    
T  24281132 tatgaaaacaacttatgatatctccataagttgttttcaacttactttcataagctctcca 24281072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 345 - 389
Target Start/End: Original strand, 39723385 - 39723429
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttat 389  Q
    |||||||||| ||||||| |||||||||||||||||  |||||||    
T  39723385 tatgaaaacagcttatgacatgttcataagctgtttttagcttat 39723429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 49605781 - 49605833
Alignment:
Q  66 gtttatttgagtttatctatttgcataagtacttgtggaagtgtttgaaagag 118  Q
    ||||||||||||||||||  | |||||||||||||||  ||||||||| ||||    
T  49605781 gtttatttgagtttatcttctagcataagtacttgtgagagtgtttgagagag 49605833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 337 - 394
Target Start/End: Complemental strand, 30535656 - 30535599
Alignment:
Q  337 ggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttca 394  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||  || |||||||||    
T  30535656 ggagaacttatgaaaacaacttatgatatgttcgtaagctgttttcaggttattttca 30535599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 339 - 394
Target Start/End: Original strand, 15740390 - 15740445
Alignment:
Q  339 agaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttca 394  Q
    ||||| |||||||||||||||||| |||||||||||||||||  | ||||||||||    
T  15740390 agaacttatgaaaacaacttatgacatgttcataagctgtttttaacttattttca 15740445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 345 - 408
Target Start/End: Original strand, 25670571 - 25670634
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||||||||||||||||| ||||| ||||  |||||  |||||||||||| |||||||||||||    
T  25670571 tatgaaaacaacttatgacatgttaataaattgttttcagcttattttcacaagctctccaaga 25670634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 345 - 408
Target Start/End: Complemental strand, 21248011 - 21247947
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttca-aaagctctccaaga 408  Q
    |||| ||| ||||||||| ||||||||||| ||||| |||||||||||||  |||||||||||||    
T  21248011 tatggaaataacttatgacatgttcataagttgttttaagcttattttcagtaagctctccaaga 21247947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 46082121 - 46082061
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 405  Q
    |||||||||||||||||| |||  |||||| |||||  |||||||||||| ||||||||||    
T  46082121 tatgaaaacaacttatgacatgaccataagttgttttcagcttattttcataagctctcca 46082061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 339 - 390
Target Start/End: Complemental strand, 11048118 - 11048067
Alignment:
Q  339 agaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttatt 390  Q
    ||||| ||| |||||||||||||| |||||||||||||||||  ||||||||    
T  11048118 agaacttatcaaaacaacttatgacatgttcataagctgttttcagcttatt 11048067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 338 - 389
Target Start/End: Complemental strand, 19719098 - 19719047
Alignment:
Q  338 gagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttat 389  Q
    |||||| |||||||||||||||||| |||||||||| ||||||  |||||||    
T  19719098 gagaacttatgaaaacaacttatgacatgttcataaactgttttcagcttat 19719047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 25596084 - 25596042
Alignment:
Q  155 tttcaacttatttccttaagctctccaagatagcatatgaaaa 197  Q
    ||||||||||||| | |||||||||||||||||| ||||||||    
T  25596084 tttcaacttattttcataagctctccaagatagcttatgaaaa 25596042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 36598341 - 36598402
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaa 406  Q
    |||| ||||| ||||||| |||||||||||||||||  |||||||||  ||| |||||||||    
T  36598341 tatggaaacatcttatgacatgttcataagctgttttcagcttatttcaaaacgctctccaa 36598402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 350 - 406
Target Start/End: Complemental strand, 7244760 - 7244704
Alignment:
Q  350 aaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaa 406  Q
    |||||| |||||| ||| ||||||| |||||  |||||||||||| |||||||||||    
T  7244760 aaacaatttatgacatgctcataagttgttttcagcttattttcataagctctccaa 7244704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 11047948 - 11047908
Alignment:
Q  349 aaaacaacttatgatatgttcataagctgtttaaagcttat 389  Q
    |||||||||||||| |||||||||||||||||  |||||||    
T  11047948 aaaacaacttatgacatgttcataagctgtttttagcttat 11047908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 338 - 394
Target Start/End: Complemental strand, 36538000 - 36537944
Alignment:
Q  338 gagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttca 394  Q
    |||||| |||| ||||||||||||| ||||||||||| |||||  ||||| ||||||    
T  36538000 gagaacttatggaaacaacttatgacatgttcataagttgtttttagctttttttca 36537944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 345 - 389
Target Start/End: Original strand, 43219789 - 43219833
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttat 389  Q
    |||||||||| ||||||| |||||||||||||||||  |||||||    
T  43219789 tatgaaaacagcttatgacatgttcataagctgtttttagcttat 43219833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 336 - 405
Target Start/End: Complemental strand, 15120277 - 15120208
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 405  Q
    |||||| | |||| ||||||||||||| |||||||| |||||||| ||||||||||| | ||||||||||    
T  15120277 gggagagcttatggaaacaacttatgacatgttcattagctgttttaagcttattttgataagctctcca 15120208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 34652055 - 34652097
Alignment:
Q  155 tttcaacttatttccttaagctctccaagatagcatatgaaaa 197  Q
    ||||||||||||||| |||||||||||||||||| ||||||||    
T  34652055 tttcaacttatttccataagctctccaagatagcttatgaaaa 34652097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 16451213 - 16451140
Alignment:
Q  336 gggagaacatatgaaaacaacttatgata-tgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||||||| |||||||||||||||||| | ||||||| ||||||||  ||||||||||||  || |||||||||    
T  16451213 gggagaacttatgaaaacaacttatgacattgttcatgagctgttttcagcttattttcacgagttctccaaga 16451140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 339 - 403
Target Start/End: Complemental strand, 1647327 - 1647263
Alignment:
Q  339 agaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctc 403  Q
    ||||| |||||||||| ||||||| ||| |||||||||||||  ||||||||| || ||||||||    
T  1647327 agaacttatgaaaacagcttatgacatgctcataagctgttttcagcttatttccataagctctc 1647263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 8017528 - 8017456
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||||||| |||||||||| ||||||||||||||||||  |||||   || |||||||| ||| |||||||||    
T  8017528 gggagaacttatgaaaacagcttatgatatgttcataatttgttttctgcgtattttcataagttctccaaga 8017456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 338 - 378
Target Start/End: Original strand, 16398449 - 16398489
Alignment:
Q  338 gagaacatatgaaaacaacttatgatatgttcataagctgt 378  Q
    ||||||||||||||||||||||||| |||| ||||||||||    
T  16398449 gagaacatatgaaaacaacttatgacatgtccataagctgt 16398489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 345 - 408
Target Start/End: Original strand, 35379001 - 35379064
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||||||||| || ||||  |||||||||| |||||  |||||||||||| |||||||||||||    
T  35379001 tatgaaaacagctgatgacttgttcataagttgttttcagcttattttcataagctctccaaga 35379064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 16867790 - 16867748
Alignment:
Q  155 tttcaacttatttccttaagctctccaagatagcatatgaaaa 197  Q
    ||||||||||||||| |||||||||||||||||| | ||||||    
T  16867790 tttcaacttatttccataagctctccaagatagcttgtgaaaa 16867748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 336 - 406
Target Start/End: Original strand, 28677635 - 28677705
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaa 406  Q
    |||||||| |||||||||| ||||||| || |||||||| |||||   |||||||| || |||||||||||    
T  28677635 gggagaacttatgaaaacagcttatgacattttcataagttgttttcggcttatttccataagctctccaa 28677705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 350 - 408
Target Start/End: Original strand, 34652026 - 34652084
Alignment:
Q  350 aaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    ||||||||||||| |||| ||||||||||||  | ||||||| || |||||||||||||    
T  34652026 aaacaacttatgacatgtccataagctgttttcaacttatttccataagctctccaaga 34652084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 4607020 - 4606947
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatat-gttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||||||| | |||||||||||||||| || |||||| ||||| ||  |||||||||||| ||| |||||||||    
T  4607020 gggagaacttgtgaaaacaacttatgacattgttcatgagctgcttttagcttattttcataagttctccaaga 4606947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 13220525 - 13220472
Alignment:
Q  338 gagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattt 391  Q
    |||||| ||| ||||||||||||||  |||||||||||||||| || |||||||    
T  13220525 gagaacttataaaaacaacttatgacttgttcataagctgttttaaacttattt 13220472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 408
Target Start/End: Original strand, 14451037 - 14451098
Alignment:
Q  347 tgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||||||||||||||| |||  ||||||||||||  ||||||||| || ||||| |||||||    
T  14451037 tgaaaacaacttatgacatgaccataagctgttttcagcttatttccacaagctatccaaga 14451098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 1494431 - 1494483
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaa 397  Q
    |||||||||| ||||||| |||| ||||| ||||||  |||||||||||||||    
T  1494431 tatgaaaacagcttatgacatgtccataaactgtttttagcttattttcaaaa 1494483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 1801762 - 1801722
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatatgttcataagct 376  Q
    |||||||| |||||||||| ||||||| |||||||||||||    
T  1801762 gggagaacttatgaaaacagcttatgacatgttcataagct 1801722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 340 - 392
Target Start/End: Original strand, 2091014 - 2091066
Alignment:
Q  340 gaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttatttt 392  Q
    |||| |||||| ||| ||||||||||| |||||||||||||  ||||||||||    
T  2091014 gaacttatgaatacagcttatgatatggtcataagctgttttcagcttatttt 2091066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 336 - 408
Target Start/End: Original strand, 12313149 - 12313221
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||||||  |||||||||| ||||||  ||||||||||| || ||  | |||||||||| |||||||||||||    
T  12313149 gggagaatttatgaaaacagcttatgccatgttcataagttgatttcaccttattttcataagctctccaaga 12313221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 343 - 371
Target Start/End: Original strand, 15870283 - 15870311
Alignment:
Q  343 catatgaaaacaacttatgatatgttcat 371  Q
    |||||||||||||||||||||||||||||    
T  15870283 catatgaaaacaacttatgatatgttcat 15870311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 338 - 406
Target Start/End: Complemental strand, 24347814 - 24347746
Alignment:
Q  338 gagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaa 406  Q
    |||||| ||||||| |||||||||||| ||||||||||  | |  |||||||||||| ||| |||||||    
T  24347814 gagaacttatgaaagcaacttatgataggttcataagccatattcagcttattttcataagttctccaa 24347746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 345 - 408
Target Start/End: Complemental strand, 36043990 - 36043926
Alignment:
Q  345 tatgaaaacaacttatgatat-gttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    ||||||||||||||| || || |||||||||||||||  |||| | ||||| |||||||||||||    
T  36043990 tatgaaaacaacttacgacattgttcataagctgtttttagctcaatttcataagctctccaaga 36043926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 43808509 - 43808473
Alignment:
Q  266 tatatgatacgcgcttatgatataagcacttaattaa 302  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  43808509 tatatgatacgcgcttatgctataaacacttaattaa 43808473  T

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Target: scaffold0608 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 338 - 394
Target Start/End: Original strand, 9615 - 9671
Alignment:
Q  338 gagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttca 394  Q
    |||||| |||||||||||||||| | |||||||||||||||||  ||||||||||||    
T  9615 gagaacttatgaaaacaacttattacatgttcataagctgtttttagcttattttca 9671  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 20936214 - 20936274
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 405  Q
    ||||||||||||||||||||||||||||||||||||  | ||||||| || || |||||||    
T  20936214 tatgaaaacaacttatgatatgttcataagctgttttcaccttatttccataatctctcca 20936274  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 336 - 391
Target Start/End: Original strand, 22662223 - 22662278
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattt 391  Q
    |||||||| |||||||| ||||||||||||||||||||||| |||  |||||||||    
T  22662223 gggagaacttatgaaaaaaacttatgatatgttcataagctattttcagcttattt 22662278  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 399
Target Start/End: Complemental strand, 30632037 - 30631987
Alignment:
Q  349 aaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagc 399  Q
    |||||||||||||  ||||||||||||||||| |||||||||| |||||||    
T  30632037 aaaacaacttatggcatgttcataagctgttttaagcttatttccaaaagc 30631987  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 345 - 402
Target Start/End: Complemental strand, 679803 - 679746
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctct 402  Q
    |||||||||| |||||||||||||||||| ||||||  ||| |||||||| |||||||    
T  679803 tatgaaaacatcttatgatatgttcataaactgttttcagcatattttcataagctct 679746  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 339 - 408
Target Start/End: Original strand, 30066745 - 30066814
Alignment:
Q  339 agaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||| ||||||||||| ||||| |||||||||||| ||||||  ||||| |||| | |||||||||||||    
T  30066745 agaaaatatgaaaacagcttataatatgttcataatctgttttcagcttgtttttataagctctccaaga 30066814  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 337 - 408
Target Start/End: Original strand, 17822841 - 17822913
Alignment:
Q  337 ggagaacatatgaaaacaacttatgata-tgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||||||||||||||||| ||||||| | | |||||||||| |||  |||||||||||| ||| |||||||||    
T  17822841 ggagaacatatgaaaacagcttatgacatttttcataagctttttttagcttattttcataagttctccaaga 17822913  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 22666702 - 22666742
Alignment:
Q  336 gggagaacatatgaaaacaacttatgatatgttcataagct 376  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  22666702 gggagaacttatgaaaaaaacttatgatatgttcataagct 22666742  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 345 - 380
Target Start/End: Complemental strand, 1966026 - 1965991
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgttt 380  Q
    |||||||||||||||||| |||||||||||||||||    
T  1966026 tatgaaaacaacttatgacatgttcataagctgttt 1965991  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 345 - 408
Target Start/End: Complemental strand, 2996658 - 2996595
Alignment:
Q  345 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 408  Q
    |||||||||||||||||| |||| |||||||| |||  | |||||||||| | |||||||||||    
T  2996658 tatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaaga 2996595  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 337 - 392
Target Start/End: Complemental strand, 25571353 - 25571298
Alignment:
Q  337 ggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttatttt 392  Q
    ||||||| |||| |||||  ||||||||||||||||||||||||  ||||||||||    
T  25571353 ggagaacttatggaaacagtttatgatatgttcataagctgttttcagcttatttt 25571298  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 54462156 - 54462199
Alignment:
Q  183 gatagcatatgaaaataacatatgaaaatagtttgtctttattt 226  Q
    |||||| |||||||| ||||||||||||||||||| ||||||||    
T  54462156 gatagcttatgaaaacaacatatgaaaatagtttgactttattt 54462199  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 403
Target Start/End: Complemental strand, 1137805 - 1137739
Alignment:
Q  337 ggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctc 403  Q
    ||||||| |||||||||| ||||||| ||||||||||| |||||  || |||||| || ||||||||    
T  1137805 ggagaacttatgaaaacatcttatgacatgttcataagttgttttcagtttatttccataagctctc 1137739  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 28300318 - 28300362
Alignment:
Q  155 tttcaacttatttccttaagctctccaagatagcatatgaaaata 199  Q
    ||||||||||||| | |||||||| ||||||||| ||||||||||    
T  28300318 tttcaacttattttcataagctcttcaagatagcctatgaaaata 28300362  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 350 - 402
Target Start/End: Complemental strand, 29263450 - 29263398
Alignment:
Q  350 aaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctct 402  Q
    ||||| ||||||||||||||||||| |||||  ||||||||| || |||||||    
T  29263450 aaacagcttatgatatgttcataagttgttttcagcttatttccacaagctct 29263398  T

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