View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6263_high_2 (Length: 381)
Name: NF6263_high_2
Description: NF6263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6263_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 371
Target Start/End: Original strand, 7470831 - 7471184
Alignment:
| Q |
18 |
aatactgataaggattctctttgatctttacacagccaagattaatgcacttgcaagcataaaaccaatctgtactgatcgcgttgatttcgaaattgaa |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7470831 |
aatactgataagcattctctttgatctttacacagccaagattaatgcacttgcaagcataaaaccaatctgtactgatcgcgttgatttcgaaattgaa |
7470930 |
T |
|
| Q |
118 |
gaagaaagttcaaatgtgcaacatacgacagctagcttagtgtcccctgttgagaatgagactctaggacccgatggaggagcagaagctgttaacagtc |
217 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7470931 |
gaagaaagttcaaatgtgcaacatactacagctagcttagtgtccactgttgagaatgagactctaggacccgatggaggagcagaagctgttaacagtc |
7471030 |
T |
|
| Q |
218 |
tcacattggatgaaagtcgagatcaatctggatctcaagctgaatctcagagtggaacacaaacaccattccatgacttggttgaaaagaaaccaaaaca |
317 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7471031 |
tcatattggatgaaagtcgagatcaatctggatctcaagctgaatctcagagtggaacacaaacaccattccatgacttggttgaaaagaaaccaaaaca |
7471130 |
T |
|
| Q |
318 |
aaagagtaagatgaagcatttattttcctattttcttggttgcattgccctttg |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7471131 |
aaagagtaagatgaagcatttattttcctattttcttggttgcattgccttttg |
7471184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University