View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6263_low_1 (Length: 389)
Name: NF6263_low_1
Description: NF6263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6263_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 7 - 383
Target Start/End: Complemental strand, 54805606 - 54805216
Alignment:
| Q |
7 |
gttttattaacctccgggtatattataaaatgtcatttcttattctttactacattgtggcattgaacttgacaaacggacaagaggtgtttttaaattg |
106 |
Q |
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| T |
54805606 |
gttttattaacctccaggtatattataaaatgtcatttattattctttactacattgtggcattgaacttgacaaacggacaagaggtgtttttaaattg |
54805507 |
T |
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| Q |
107 |
atctgttaaatgttttaaatttatcagaatgcttccaatt----ggtct---------cagttcataacttaatctgaattttgattccaattggtctca |
193 |
Q |
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| T |
54805506 |
atctgttaaatgttttaaatttatcagaatgcttccaagttcaggaacttaaataaatcagttcataacttaatctgaattttgattccaattggtctca |
54805407 |
T |
|
| Q |
194 |
gtttctgtacgtttttaagttcgtgaggcaatattccgtctcagtttttgagaattattgctaatttcaattctcccatatgtgtttctggttacctata |
293 |
Q |
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| T |
54805406 |
gtttctgtacgtttttaagttcgtgaggcaatattccttctcagtttttgagaattattgctaatttcaattctcccatatgtgtttctggttacctata |
54805307 |
T |
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| Q |
294 |
t-aaatttactgaaataattttccttggtcctctccctttctaatgatgctcagctacaccatatttaagaacgtttttaattcatttcac |
383 |
Q |
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| T |
54805306 |
tgaattttactgaaataattttccttggtccactccctttctaatgatgctcagctacaccatatttaagaacgtttttaattcatatcac |
54805216 |
T |
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