View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6263_low_3 (Length: 349)

Name: NF6263_low_3
Description: NF6263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6263_low_3
NF6263_low_3
[»] chr6 (2 HSPs)
chr6 (11-332)||(5948158-5948495)
chr6 (124-256)||(395378-395510)
[»] chr4 (2 HSPs)
chr4 (17-91)||(20320225-20320296)
chr4 (59-91)||(20321255-20321287)
[»] chr8 (1 HSPs)
chr8 (46-91)||(10161392-10161437)
[»] chr7 (1 HSPs)
chr7 (46-91)||(11019881-11019926)
[»] chr1 (3 HSPs)
chr1 (46-91)||(15550446-15550491)
chr1 (46-91)||(27054299-27054344)
chr1 (46-91)||(46602821-46602866)
[»] chr5 (2 HSPs)
chr5 (46-91)||(16438503-16438548)
chr5 (46-91)||(40796053-40796098)
[»] chr2 (1 HSPs)
chr2 (11-87)||(30777194-30777262)


Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 332
Target Start/End: Complemental strand, 5948495 - 5948158
Alignment:
Q  11 aatgtaaaagtggatcatttatgtcattaattctctaat--------tctcatatggggtcaaaagtggaattgttttgggaaacagggatagnnnnnnn 102  Q
    |||||||||||||||||||||||||||||||||||||||        ||| |||||||||||||||||||||||||||||||||| |||| ||           
T  5948495 aatgtaaaagtggatcatttatgtcattaattctctaataatctaattcttatatggggtcaaaagtggaattgttttgggaaactgggacagaaaaaaa 5948396  T
Q  103 nnnnnnn--------tcgcgctctcagaggacttatcatcaacactaacacactcactgacttcagcattggtgaaactttgtttcgcttccgaatagac 194  Q
                   ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5948395 aaaaaaaaaaaaaaatcgcgctctcacaggacttatcatcaacactaacacactcactgacttcagcattggtgaaactttgtttcgcttccgaatagac 5948296  T
Q  195 agtggctgaataataactgttctgaggactaagacaaaaactagtctctgactgagaatagtgattacatataaaattatatttctcctacaataatgag 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5948295 agtggctgaataataactgttctgaggactaagacaaaaactagtctctgactgagaatagtgattacatataaaattatatttctcctacaataatgag 5948196  T
Q  295 atgaaatttaaccatgccaacctcaataaccaataacc 332  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5948195 atgaaatttaaccatgccaacctcaataaccaataacc 5948158  T

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Target: chr6; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 124 - 256
Target Start/End: Complemental strand, 395510 - 395378
Alignment:
Q  124 gacttatcatcaacactaacacactcactgacttcagcattggtgaaactttgtttcgcttccgaatagacagtggctgaataataactgttctgaggac 223  Q
    ||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  395510 gacttatcatcaacactgacacactcactgacttcagtatcggtgaaactttgtttcgcttccgaatagacagtggctgaatagtaactgttctgaggac 395411  T
Q  224 taagacaaaaactagtctctgactgagaatagt 256  Q
    ||||||||||||||||||||| |||||||||||    
T  395410 taagacaaaaactagtctctggctgagaatagt 395378  T

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Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 20320296 - 20320225
Alignment:
Q  17 aaagtggatcatttatgtcattaattctctaattctcatatggggtcaaaagtggaattgttttgggaaacaggg 91  Q
    ||||||| ||||||||||||||||||||||   ||||||||||||||||||||||| ||||||||||||| ||||    
T  20320296 aaagtgggtcatttatgtcattaattctct---tctcatatggggtcaaaagtggagttgttttgggaaataggg 20320225  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 91
Target Start/End: Original strand, 20321255 - 20321287
Alignment:
Q  59 gggtcaaaagtggaattgttttgggaaacaggg 91  Q
    |||||||||||||| ||||||||||||||||||    
T  20321255 gggtcaaaagtggagttgttttgggaaacaggg 20321287  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 10161437 - 10161392
Alignment:
Q  46 taattctcatatggggtcaaaagtggaattgttttgggaaacaggg 91  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  10161437 taattctcatatggggtcaaaagtggaattgatttgggaaacaggg 10161392  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 11019926 - 11019881
Alignment:
Q  46 taattctcatatggggtcaaaagtggaattgttttgggaaacaggg 91  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  11019926 taattctcatatggggtcaaaagtggaattgatttgggaaacaggg 11019881  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 15550491 - 15550446
Alignment:
Q  46 taattctcatatggggtcaaaagtggaattgttttgggaaacaggg 91  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  15550491 taattctcatatggggtcaaaaatggaattgttttgggaaacaggg 15550446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 27054344 - 27054299
Alignment:
Q  46 taattctcatatggggtcaaaagtggaattgttttgggaaacaggg 91  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  27054344 taattctcatatggggtcaaaagtggaattgttttgggaatcaggg 27054299  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 46602821 - 46602866
Alignment:
Q  46 taattctcatatggggtcaaaagtggaattgttttgggaaacaggg 91  Q
    |||||||||||||||||| |||||||||||| |||| |||||||||    
T  46602821 taattctcatatggggtctaaagtggaattgatttgagaaacaggg 46602866  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 16438503 - 16438548
Alignment:
Q  46 taattctcatatggggtcaaaagtggaattgttttgggaaacaggg 91  Q
    |||||||||||||||||||||| |||||||| ||| ||||||||||    
T  16438503 taattctcatatggggtcaaaaatggaattgatttaggaaacaggg 16438548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 40796098 - 40796053
Alignment:
Q  46 taattctcatatggggtcaaaagtggaattgttttgggaaacaggg 91  Q
    ||||| ||||||| ||||||||||||||||  ||||||||||||||    
T  40796098 taattttcatatgaggtcaaaagtggaattaatttgggaaacaggg 40796053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 30777262 - 30777194
Alignment:
Q  11 aatgtaaaagtggatcatttatgtcattaattctctaattctcatatggggtcaaaagtggaattgttttgggaaac 87  Q
    ||||| |||||||||||||||||||||||||        ||||||| | ||||||||||||||||||| ||||||||    
T  30777262 aatgtgaaagtggatcatttatgtcattaat--------tctcataggaggtcaaaagtggaattgttctgggaaac 30777194  T

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