View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6263_low_4 (Length: 229)
Name: NF6263_low_4
Description: NF6263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6263_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 32765386 - 32765582
Alignment:
| Q |
20 |
gacaatggatactattacattattctaattaattaaatcaggaaacagtgtcgttgtaataaataagaaatggcattatgaaaatcagatttagtttcaa |
119 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32765386 |
gacaatggatactattacattatattaattaattaaatcaggaaacagtgtcgttgtaataaataagaaatggcattatgaaaatcagatttagtttcaa |
32765485 |
T |
|
| Q |
120 |
aactaggcacaaaccacgggtatttataatacatcaaaccatggtcaacaattagacgtattaatggaattcacccacttctgtatcttttcttctc |
216 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32765486 |
aactaggcacaaaccatgggtatttataatacatcaaaccatggtcaacaattagacgtattaatggaattcacccacttctgtatcttttcttctc |
32765582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 32754829 - 32754886
Alignment:
| Q |
118 |
aaaactaggcacaaaccacgggtatttataatacatcaaaccatggtcaacaattaga |
175 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
32754829 |
aaaactaggcataaactgagggtatttataatacatcaaatcatgatcaacaattaga |
32754886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University