View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6263_low_5 (Length: 218)
Name: NF6263_low_5
Description: NF6263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6263_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 27334258 - 27334059
Alignment:
| Q |
1 |
aaaattagacattgaaa-cttctaaaaattactataaacggttcaaaactagtaatcgtagttggtcaaacctgaactaaacataacnnnnnnnngacaa |
99 |
Q |
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| T |
27334258 |
aaaattagacattgaaaacttctaaaaattactataaacggttcaaaactagtaatcatagttggtcaaacctgaactaaacataacttttttttgacaa |
27334159 |
T |
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| Q |
100 |
aatcaaaacacagggttagttcctaactttctcatggcctctcaaaactttggtagtttggcttcattaaacgacaacagtcaccaaatgaagttttggt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
27334158 |
aatcaaaacacagggttagttcctaactttctcatgacctctcaaaaatttggtagtttggcttcattagacgacaacagtcaccaaatgaacttttggt |
27334059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 161
Target Start/End: Original strand, 25829440 - 25829479
Alignment:
| Q |
122 |
ctaactttctcatggcctctcaaaactttggtagtttggc |
161 |
Q |
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| T |
25829440 |
ctaactttctcatggcctttcaaaactttggttgtttggc |
25829479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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