View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6264-Insertion-14 (Length: 191)
Name: NF6264-Insertion-14
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6264-Insertion-14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 8 - 191
Target Start/End: Complemental strand, 29519084 - 29518901
Alignment:
| Q |
8 |
atcgccgcaagaaacatggagtctgcaaaggaagctaaacaaattatactccaagacaacgagtctgctcgagttgacataatgaagctcgacctttgtt |
107 |
Q |
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| T |
29519084 |
atcgccgcaagaaacatggagtctgcaaaggaagctaaacaaattatactacaagacaacgagtctgctcgagttgacataatgaagctcgacctttgtt |
29518985 |
T |
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| Q |
108 |
cagtgaagtctgttagatcgtttgttgaaaacttcctcgctctcgatcttcctctcaacatcttaatgtatgttcatcatcctc |
191 |
Q |
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| T |
29518984 |
cagtgaagtctgttagatcgtttgttgaaaacttcctcgctctcgatcttcctctcaacatcttaatgtatgttgatcatcctc |
29518901 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 14 - 181
Target Start/End: Original strand, 40100945 - 40101112
Alignment:
| Q |
14 |
gcaagaaacatggagtctgcaaaggaagctaaacaaattatactccaagacaacgagtctgctcgagttgacataatgaagctcgacctttgttcagtga |
113 |
Q |
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||||||||||| || |||||| ||||||| |||||| ||| ||||| ||| | ||||| ||||| ||||||||||| || ||||| || ||| | |
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| T |
40100945 |
gcaagaaacattgaatctgcagaggaagccaaacaacaaataacacaagagaacaaatctgcacgagtggacataatgaaacttgacctatgctcaacaa |
40101044 |
T |
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| Q |
114 |
agtctgttagatcgtttgttgaaaacttcctcgctctcgatcttcctctcaacatcttaatgtatgtt |
181 |
Q |
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| T |
40101045 |
agtctgtccgatcattcgtcgacaacttcattgctcttgatcttcctctcaacatcttaatgtttgtt |
40101112 |
T |
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