View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6264-Insertion-2 (Length: 618)
Name: NF6264-Insertion-2
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6264-Insertion-2 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
| [»] scaffold0272 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 163; Significance: 9e-87; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 392 - 618
Target Start/End: Complemental strand, 15858260 - 15858034
Alignment:
| Q |
392 |
cttgagaagcctccggaagtaacacatgtctaacagccaaggtcacttttgagggtattctatcatgaagaagcttccaggagaatgccactactttaga |
491 |
Q |
| |
|
||||||||||||||||| ||| ||| |||||||| |||||| || |||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
15858260 |
cttgagaagcctccggaggtagcacctgtctaaccgccaagttcgctttagagggtattctatcatgaagaagcttccaagagaatgccacaactttaga |
15858161 |
T |
|
| Q |
492 |
cggtgccggacttttccaaacggaggaaaacaccctaccttgctcctccaatattgttcttgcctctagcattgaaccctctaacttcttgtacagtgac |
591 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
15858160 |
cggtgccggacttttccaaacggaggaaaacaccctaccttgctcctccgatattgttctcgcctctagcattgaaccctctaacttcttgtacaaagaa |
15858061 |
T |
|
| Q |
592 |
ttcaccgaaaaagctctcttctcttcc |
618 |
Q |
| |
|
|||||||||||| ||| |||||||||| |
|
|
| T |
15858060 |
ttcaccgaaaaaactcccttctcttcc |
15858034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 15859042 - 15858910
Alignment:
| Q |
15 |
ggaagtgaggccgacatatacatatgagatgccacaagaatatccctgcctcaccacaaacaacgctcagcctcaccacaagccaccaaaacaggccctg |
114 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15859042 |
ggaagtgaggccgacatatacatgtgagattccacaagaatatccctgccttaccacaaacaacgcgcagcctcaccacaagccaccaaaacaggcccta |
15858943 |
T |
|
| Q |
115 |
gaac-aacaacccacaaccaacacccactgctg |
146 |
Q |
| |
|
||| |||| |||| ||||| |||||||||||| |
|
|
| T |
15858942 |
aaacaaacaccccagaaccagcacccactgctg |
15858910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 309 - 393
Target Start/End: Complemental strand, 15858791 - 15858706
Alignment:
| Q |
309 |
gaacagaccgcacaaacagccaactgcaaaacagcaaaaacagatgctagcaaaaacagaaccgtgcacatca-gcaggaacaact |
393 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
15858791 |
gaacagaccgcacaaacagccagctgcaaaacagcaaaaacagatgctagcaaaaacggaaccgtgcacatcatgcaggaacaact |
15858706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 4e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 32183224 - 32183027
Alignment:
| Q |
15 |
ggaagtgaggccgacatatacatatgagatgccacaagaatatccctgcctcaccacaaacaacgctcagcctcaccacaagccaccaaaacaggccctg |
114 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32183224 |
ggaagtgaggccgacatatacatgtgagatgccacaagaatatccctgcctcgccacaaacaacgctcagcctcaccacaagccaccaaaacaggccctg |
32183125 |
T |
|
| Q |
115 |
gaacaacaacccacaaccaacacccactgctgtcaaccaaactgcaggccgcacccctccaccaggcataaaaaccaacagaaattatactaccatcc |
212 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||| | | ||||||||| |
|
|
| T |
32183124 |
gaacaacaacccacaaccagcacccactgctgtctaccaaactgcatgccgcacccctccaccaggcataaaaaccaacaaaaaatctgctaccatcc |
32183027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 434 - 511
Target Start/End: Complemental strand, 1611316 - 1611239
Alignment:
| Q |
434 |
tcacttttgagggtattctatcatgaagaagcttccaggagaatgccactactttagacggtgccggacttttccaaa |
511 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||| ||||| ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
1611316 |
tcacttttgacggtattctatcatgaaaaagcttccaagagaaggccaccactttggacggtgccggacttttccaaa |
1611239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 395 - 511
Target Start/End: Complemental strand, 2296 - 2180
Alignment:
| Q |
395 |
gagaagcctccggaagtaacacatgtctaacagccaaggtcacttttgagggtattctatcatgaagaagcttccaggagaatgccactactttagacgg |
494 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| |||||||||| || |||||||||||||| |||||||| || || |||| ||||| ||||| |
|
|
| T |
2296 |
gagaagcctccggaggtaacacatgtctatacgccaaattcacttttgacggaattctatcatgaaggagcttccatgaaaacaccacgactttggacgg |
2197 |
T |
|
| Q |
495 |
tgccggacttttccaaa |
511 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
2196 |
cgccgggcttttccaaa |
2180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University