View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6264-Insertion-3 (Length: 583)
Name: NF6264-Insertion-3
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6264-Insertion-3 |
 | |
|
| [»] chr5 (18 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0627 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 513; Significance: 0; HSPs: 18)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 7 - 583
Target Start/End: Complemental strand, 8529075 - 8528480
Alignment:
| Q |
7 |
atcatggactaagatttacaacatcgatacttcgttcaatcctttggatcgtgttccacggggttatggtttaagctggccgataaaacactttgaagaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529075 |
atcatggactaagatttacaacatcgatacttcgttcaatcctttggatcgtgttccacggggttatggtttaagctggccgataaaacactttgaagaa |
8528976 |
T |
|
| Q |
107 |
ggtgctgccatattgtcatatcattcctccaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgggagtcggataa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8528975 |
ggtgctgccatattgtcatatcattcctccaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgggagtcggataa |
8528876 |
T |
|
| Q |
207 |
attattttgaagtaatcccacacattccaagtccaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaaaa |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8528875 |
attattttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaaaa |
8528776 |
T |
|
| Q |
307 |
tttta----------------aatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgta |
390 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8528775 |
ttttatttttattggcaattgaatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgta |
8528676 |
T |
|
| Q |
391 |
agtttcctatgttacacttatattttaaacttactatttttccattccacttggagaaaagaagacatgttgttaggttacttaggtagatatattctca |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8528675 |
agtttcctatgttacacttatattttaaacttactatttttccattccatttggagaaaagaagacatgttgttaggttacttaggtagatatattctca |
8528576 |
T |
|
| Q |
491 |
caacgacatgttggagaaaggttgtcatgtttcgtcagtcatttgctttcacagctaatatatttatga---tgtatatatttgttataattttag |
583 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
8528575 |
caacgacatgttggagaaaggttgtcatgtttcgtcaatcatttgctttcacagctaatatatttatgatgttgtatatatttgttatatttttag |
8528480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 304
Target Start/End: Complemental strand, 8535633 - 8535333
Alignment:
| Q |
7 |
atcatggactaagatttacaacatcgatacttcgttcaatcctttgga---tcgtgttccacggggttatggtttaagctggccgataaaacactttgaa |
103 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||| ||| ||||||||||||| | ||||||||||||||||| ||||||||||||||| |
|
|
| T |
8535633 |
atcatggactaagatttacaacattgatacttcattcaatccttcggaaagtcgtgttccacggagatatggtttaagctggccaataaaacactttgaa |
8535534 |
T |
|
| Q |
104 |
gaaggtgctgccatattgtcatatcattcctccaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgggagtcgga |
203 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||| |||||||| ||| |||||||||||||| | |||||| | |
|
|
| T |
8535533 |
gaaggtgctgccatattgttatatcattcctgcaattgttttatctactatgaacctgagaaatatggattcgaagtttttcgaatttacgggagtagtt |
8535434 |
T |
|
| Q |
204 |
taaattattttgaagtaatcccacacattccaagtccaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggta |
303 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
8535433 |
caaatttttttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggtgacaatattgaggttctgaatatccactcaaggta |
8535334 |
T |
|
| Q |
304 |
a |
304 |
Q |
| |
|
| |
|
|
| T |
8535333 |
a |
8535333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 7 - 418
Target Start/End: Original strand, 9074697 - 9075109
Alignment:
| Q |
7 |
atcatggactaagatttacaacatcgatacttcgttcaatcctttgga---tcgtgttccacggggttatggtttaagctggccgataaaacactttgaa |
103 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||| || || | || || |||||| |||||| ||||||||||||||||||||| |
|
|
| T |
9074697 |
atcatggactaaagtttacaacattgatacttcgttcaatccttcgggctgtcttattacatggggttcaggttta---tggccgataaaacactttgaa |
9074793 |
T |
|
| Q |
104 |
gaaggtgctgccatattgtcatatcattcctccaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgggagtcgga |
203 |
Q |
| |
|
||||||||||||||||||| |||||||| || ||||||||||| || ||| |||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9074794 |
gaaggtgctgccatattgttatatcattgctacaattgttttatcttctatgaacctgagaaatatggattcaaagtttttcgaattcatgggagtcatt |
9074893 |
T |
|
| Q |
204 |
taaattattttgaagtaatcccacacattccaagtccaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggta |
303 |
Q |
| |
|
||| | |||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||| |||||| ||||| |||||||||||||||||||| |
|
|
| T |
9074894 |
caaagttttttgaagtaatcccacatattccaagtctaatttcattgaaggatgtcttgaaaggagacaatatcgaggtgctgaatatccactcaaggta |
9074993 |
T |
|
| Q |
304 |
a-aattttaaatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgt |
402 |
Q |
| |
|
| ||| | ||| || || || |||| ||||||||||||||||| ||| ||||||| || |||| |||||||||||| | || |||||| ||||| |
|
|
| T |
9074994 |
agaatgtagcttctaatactttat-tttccgtacaagtcatagtaattaattttaatcataagatgagttttcaaagggactcgagtgagtttcttatgt |
9075092 |
T |
|
| Q |
403 |
ta-cacttatattttaa |
418 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
9075093 |
taccacttatattttaa |
9075109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 70 - 304
Target Start/End: Complemental strand, 8677871 - 8677637
Alignment:
| Q |
70 |
ttatggtttaagctggccgataaaacactttgaagaaggtgctgccatattgtcatatcattcctccaattgttttacctactacgaacctgaaaaatat |
169 |
Q |
| |
|
|||||||||| | |||||| |||||||||||||||| |||||||||||||||| ||||||||||| ||||||| ||| |||||| ||||| || ||| || |
|
|
| T |
8677871 |
ttatggtttatgttggccggtaaaacactttgaagagggtgctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacat |
8677772 |
T |
|
| Q |
170 |
gggttcaaagtttttcgaattcatggga-gtcggataaattattttgaagtaatcccacacattccaagtccaatttcattgaaggatgttttgaaagga |
268 |
Q |
| |
|
|| |||||||||||||||||||| || | || |||| | ||||| |||| ||||| ||||||||| ||| ||||||||||||||| |||||||| |
|
|
| T |
8677771 |
ggtttcaaagtttttcgaattcacggcacttcttccgaatt-tgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaagga |
8677673 |
T |
|
| Q |
269 |
gtcaatattgaggttctgaatatccactcaaggtaa |
304 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
8677672 |
gacaatattgaggtgctgaatatccactcaaggtaa |
8677637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 83 - 304
Target Start/End: Original strand, 1600336 - 1600554
Alignment:
| Q |
83 |
tggccgataaaacactttgaagaaggtgctgccatattgtcatatcattcctccaattgttttacctactacgaacctgaaaaatatgggttcaaagttt |
182 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||| ||| | |||||||| | ||| || ||||||| |||||| | | ||||| || |
|
|
| T |
1600336 |
tggccgatacaacactttgaagaaggtgctgccatattgttatatgattac---aattgtttaatctattatgaacctgcgaaatatcgatgcaaagctt |
1600432 |
T |
|
| Q |
183 |
ttcgaattcatgggagtcggataaattattttgaagtaatcccacacattccaagtccaatttcattgaaggatgttttgaaaggagtcaatattgaggt |
282 |
Q |
| |
|
|| ||||||||||||||| | ||| ||||||| ||||||| || |||||||||| |||||||||||||||||| |||||||| | |||||||||||| |
|
|
| T |
1600433 |
ttgaaattcatgggagtcgttcagattgttttgaaataatcccgcatattccaagtctaatttcattgaaggatgtcttgaaaggggacaatattgaggt |
1600532 |
T |
|
| Q |
283 |
tctgaatatccactcaaggtaa |
304 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1600533 |
gctgaatatccactcaaggtaa |
1600554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 7 - 302
Target Start/End: Complemental strand, 8636999 - 8636701
Alignment:
| Q |
7 |
atcatggactaagatttacaacatcgatacttcgttcaatcctttggatcg---tgttccacggggttatggtttaagctggccgataaaacactttgaa |
103 |
Q |
| |
|
||||||||||||| |||||||||||||||||| | ||| |||||||| | || | | | | |||||||| || | |||||| |||||||||||||| |
|
|
| T |
8636999 |
atcatggactaaggtttacaacatcgatactttggtcagtcctttgggcagacctgattcgcagcgttatggtatatgatggccggtaaaacactttgaa |
8636900 |
T |
|
| Q |
104 |
gaaggtgctgccatattgtcatatcattcctccaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgggagtcgga |
203 |
Q |
| |
|
|| || ||||||||||||| ||||||||||| ||||||| ||| |||||| ||||| || ||| ||| |||||||||||| ||||||| || | | |
|
|
| T |
8636899 |
gagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacttggtttcaaagtttttagaattcaaggcacttctt |
8636800 |
T |
|
| Q |
204 |
taaattattttgaagtaatcccacacattccaagtccaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggt |
302 |
Q |
| |
|
| | | ||||| |||| ||||| ||||||||| ||| |||||||||||||| ||||||||| |||||| ||||| ||||||||||||||||||| |
|
|
| T |
8636799 |
ccgagtttgttgaaataattccacatgttccaagtctaatctcattgaaggatgtcgtgaaaggagacaatatcgaggtgctgaatatccactcaaggt |
8636701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 69 - 304
Target Start/End: Complemental strand, 8644279 - 8644044
Alignment:
| Q |
69 |
gttatggtttaagctggccgataaaacactttgaagaaggtgctgccatattgtcatatcattcctccaattgttttacctactacgaacctgaaaaata |
168 |
Q |
| |
|
||||||||||| | |||||| ||||| |||||||||| || ||||||||||||| ||||||||||| ||||||| ||| |||||| ||||| | ||| | |
|
|
| T |
8644279 |
gttatggtttatgttggccggtaaaaaactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccaagaaaca |
8644180 |
T |
|
| Q |
169 |
tgggttcaaagtttttcgaattcatggga-gtcggataaattattttgaagtaatcccacacattccaagtccaatttcattgaaggatgttttgaaagg |
267 |
Q |
| |
|
|| |||||||||||||||||||| || | || |||| | ||||| |||| ||||| ||||||||| ||| ||||||||||||||| ||||||| |
|
|
| T |
8644179 |
tgctttcaaagtttttcgaattcacggcatttcttccgaatt-tgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaagg |
8644081 |
T |
|
| Q |
268 |
agtcaatattgaggttctgaatatccactcaaggtaa |
304 |
Q |
| |
|
|| ||||| |||| | ||||||||||||||||||||| |
|
|
| T |
8644080 |
agacaatactgagatgctgaatatccactcaaggtaa |
8644044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 312 - 421
Target Start/End: Complemental strand, 8535294 - 8535183
Alignment:
| Q |
312 |
aatctgatggttgatgcttccttacaa-gtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgtta-cactt |
409 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||| ||||||| || |||||||||||||| |||| |||||||||||||||||| || || |
|
|
| T |
8535294 |
aatctgatggttgatgctcccttacaaagtcatagtaattgattttaatcataagacgagtattcaaaggaacttctgtaagtttcctatgttaccagtt |
8535195 |
T |
|
| Q |
410 |
atattttaaact |
421 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8535194 |
atattttaaact |
8535183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 85 - 304
Target Start/End: Original strand, 8548146 - 8548365
Alignment:
| Q |
85 |
gccgataaaacactttgaagaaggtgctgccatattgtcatatcattcctccaattgttttacctactacgaacctgaaaaatatgggttcaaagttttt |
184 |
Q |
| |
|
|||| |||||||||||||||| ||||||||| |||||| ||||||||| | |||||||||| ||||| | || || |||||||| |||||| |||| |
|
|
| T |
8548146 |
gccggtaaaacactttgaagagggtgctgccgtattgttatatcattcattggattgttttacttactataaccccgataaatatggagtcaaagatttt |
8548245 |
T |
|
| Q |
185 |
cgaattcatgggagtcggataaattattttgaagtaatcccacacattccaagtccaatttcattgaaggatgttttgaaaggagtcaatattgaggttc |
284 |
Q |
| |
|
||||||||||| | | | | ||||||||||| | ||| |||||||||| ||| |||||||||||||| ||||||||| |||||||||||| | |
|
|
| T |
8548246 |
cgaattcatggctcttcttcacaatcatttgaagtaattcaacatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgc |
8548345 |
T |
|
| Q |
285 |
tgaatatccactcaaggtaa |
304 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
8548346 |
tgaatatccactcaaagtaa |
8548365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 511 - 583
Target Start/End: Complemental strand, 8535122 - 8535047
Alignment:
| Q |
511 |
gttgtcatgtttcgtcagtcatttgctttcacagctaatatatttatga---tgtatatatttgttataattttag |
583 |
Q |
| |
|
||||| ||||||||||| ||||||||||| ||| ||||||||||||||| ||| |||||||||||||| ||||| |
|
|
| T |
8535122 |
gttgtgatgtttcgtcaatcatttgcttttacaactaatatatttatgaagttgtttatatttgttataaatttag |
8535047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 465
Target Start/End: Original strand, 8548409 - 8548562
Alignment:
| Q |
312 |
aatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgttac-actta |
410 |
Q |
| |
|
|||||||||||||||||| || || || ||||||||||| ||| ||||||| || |||||||||||||| | ||||| | ||| | |||||| |||| |
|
|
| T |
8548409 |
aatctgatggttgatgctcccataaaaatcatagtaattaattttaatcataagatgagtattcaaagggtcatgtgtgaattttttgtgttactgctta |
8548508 |
T |
|
| Q |
411 |
tattttaaacttactatttttccattccacttggagaaaagaagacatgttgtta |
465 |
Q |
| |
|
|| ||||||||| ||||||| ||||| | ||||| ||| |||| | |||||||| |
|
|
| T |
8548509 |
ta-tttaaacttcctattttggcattctatttggataaaggaaggcttgttgtta |
8548562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 8641435 - 8641357
Alignment:
| Q |
66 |
ggggttatggtttaagctggccgataaaacactttgaagaaggtgctgccatattgtcatatcattcctccaattgttt |
144 |
Q |
| |
|
||||||||||| || | |||||| ||| |||||||||||| |||||||| ||| || ||||||||||| ||||||||| |
|
|
| T |
8641435 |
ggggttatggtgtatgttggccggtaatacactttgaagatggtgctgcgttatggttatatcattcctgcaattgttt |
8641357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 2856974 - 2857018
Alignment:
| Q |
153 |
acgaacctgaaaaatatgggttcaaagtttttcgaattcatggga |
197 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||| |||| |
|
|
| T |
2856974 |
acgaacctgagaaacatgggttcaaagtttttcgaattcaaggga |
2857018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 2874584 - 2874628
Alignment:
| Q |
153 |
acgaacctgaaaaatatgggttcaaagtttttcgaattcatggga |
197 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||| |||| |
|
|
| T |
2874584 |
acgaacctgagaaacatgggttcaaagtttttcgaattcaaggga |
2874628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 8641297 - 8641242
Alignment:
| Q |
213 |
ttgaagtaatcccacacattccaagtccaatttcattgaaggatgttttgaaagga |
268 |
Q |
| |
|
|||||||||| ||||| |||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
8641297 |
ttgaagtaattccacatattccaagtctaatctcattgaaggatgtcgtgaaagga |
8641242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 385
Target Start/End: Original strand, 1600601 - 1600670
Alignment:
| Q |
316 |
tgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggactt |
385 |
Q |
| |
|
||||||| |||| | || ||||||||||||||||| ||| ||||||| || | ||| ||||||||||||| |
|
|
| T |
1600601 |
tgatggtcgatgttcccatacaagtcatagtaattaattttaatcataagacaagttttcaaagggactt |
1600670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 2845147 - 2845191
Alignment:
| Q |
153 |
acgaacctgaaaaatatgggttcaaagtttttcgaattcatggga |
197 |
Q |
| |
|
|||||||||| ||| ||| ||||||||||||||||||||| |||| |
|
|
| T |
2845147 |
acgaacctgagaaacatgagttcaaagtttttcgaattcaaggga |
2845191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 301
Target Start/End: Complemental strand, 9003393 - 9003305
Alignment:
| Q |
213 |
ttgaagtaatcccacacattccaagtccaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaagg |
301 |
Q |
| |
|
|||||||||| ||||| |||||||||| ||| ||||||||||| | | | || |||| |||| ||||||| ||||| || |||||||| |
|
|
| T |
9003393 |
ttgaagtaattccacatattccaagtctaatctcattgaaggaggctgtaaatggagacaatgttgaggtgttgaatgtctactcaagg |
9003305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 7 - 583
Target Start/End: Complemental strand, 9443236 - 9442630
Alignment:
| Q |
7 |
atcatggactaagatttacaacatcgatacttcgttcaatcctttggatcgtgttccacggggttatggtttaagctggccgataaaacactttgaagaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443236 |
atcatggactaagatttacaacatcgatacttcgttcaatcctttggatcgtgttccacggggttatggtttaagctggccgataaaacactttgaagaa |
9443137 |
T |
|
| Q |
107 |
ggtgctgccatattgtcatatcattcctccaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgggagtcggataa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
9443136 |
ggtgctgccatattgtcatatcattccttcaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgggagtcggaaaa |
9443037 |
T |
|
| Q |
207 |
attattttgaagtaatcccacacattccaagtccaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaaaa |
306 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443036 |
attattttgaagtaatccaacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaaaa |
9442937 |
T |
|
| Q |
307 |
tttta----------------aatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgta |
390 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9442936 |
ttttatttttattggcaattgaatctgatggttgatgcttctttacaagtcatagtaattgattgtaatcatgagatgagtattcaaagggacttgtgta |
9442837 |
T |
|
| Q |
391 |
agtttcctatgttacacttatattttaaacttactatttttccattccacttggagaaaagaagacatgttgttaggttacttaggtagatatattctca |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
9442836 |
agtttcctatgttacacttatattttaaacttactattttgccattccatttggagaaaagaaaacatgttgttaggttacttcggttgatatattctca |
9442737 |
T |
|
| Q |
491 |
caac-----------gacatgttggagaaaggttgtcatgtttcgtcagtcatttgctttcacagctaatatatttatga---tgtatatatttgttata |
576 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9442736 |
caacgacatgttggagacatgttggagaaaggttgtgatgtttcgtcaatcatttgctttcgcagctaatatatttatgatgttgtatatatttgttata |
9442637 |
T |
|
| Q |
577 |
attttag |
583 |
Q |
| |
|
|||||| |
|
|
| T |
9442636 |
tttttag |
9442630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 83 - 304
Target Start/End: Original strand, 48361902 - 48362128
Alignment:
| Q |
83 |
tggccgataaaacactttgaagaaggtgctgccatattgtcatatcattcctccaattgttttacctactacgaacctgaaaaatatgggttcaaagttt |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| | | |||| | ||| || |||||||| |||||| | | ||||| || |
|
|
| T |
48361902 |
tggccgataaaacactttgaagaaggtgctgccatattgttatatcattcctacgaccgtttaatctattatgaacctgagaaatatagatgcaaagctt |
48362001 |
T |
|
| Q |
183 |
ttcgaattcatgggagtcggataaattattttgaagtaatcccacacattccaagtc-----caatttcattgaaggatgttttgaaaggagtcaatatt |
277 |
Q |
| |
|
||| ||||| |||||||| | || |||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||| ||||| |
|
|
| T |
48362002 |
ttcatattcacgggagtcgttcaggttcttttgaagtaatcccacatattccaagtctaatttaatttcattgaaggatgtcttgaaaggagataatatg |
48362101 |
T |
|
| Q |
278 |
gaggttctgaatatccactcaaggtaa |
304 |
Q |
| |
|
||||| ||||| |||||||||||||| |
|
|
| T |
48362102 |
gaggtgttgaatgtccactcaaggtaa |
48362128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 112 - 279
Target Start/End: Complemental strand, 35779861 - 35779694
Alignment:
| Q |
112 |
tgccatattgtcatatcattcctccaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgggagtcggataaattat |
211 |
Q |
| |
|
||||||||||| ||||||||| | ||||||||||| ||||| |||||||| |||||||| | ||||||||||||||||| ||||| ||| ||| | | |
|
|
| T |
35779861 |
tgccatattgttatatcattcatgcaattgttttatctactttgaacctgagaaatatggatacaaagtttttcgaattcgtgggactcgttcaaaatct |
35779762 |
T |
|
| Q |
212 |
tttgaagtaatcccacacattccaagtccaatttcattgaaggatgttttgaaaggagtcaatattga |
279 |
Q |
| |
|
|||||||||| ||||| |||||||||| ||| ||||||||||||||| | ||||||| ||||||||| |
|
|
| T |
35779761 |
gttgaagtaattccacatattccaagtctaatatcattgaaggatgttgtaaaaggagacaatattga |
35779694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 83 - 304
Target Start/End: Complemental strand, 5130860 - 5130638
Alignment:
| Q |
83 |
tggccgataaaacactttgaagaaggtgctgccatattgtcatatcattcctccaattgttttacct-actacgaacctgaaaaatatgggttcaaagtt |
181 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||| ||||||||||| ||| |||||| || || | ||||| || |||||| | | ||||||| |
|
|
| T |
5130860 |
tggccggtaaaacactttgaagagggtgctgccatattgctatatcattcctgcaactgttttgtcttaccatgaaccggagaaatatagatacaaagtt |
5130761 |
T |
|
| Q |
182 |
tttcgaattcatgggagtcggataaattattttgaagtaatcccacacattccaagtccaatttcattgaaggatgttttgaaaggagtcaatattgagg |
281 |
Q |
| |
|
|||||||||||||||| | | ||| | |||||||||| ||||| ||| |||||| ||||||| | |||||| || ||||||||| ||||||||||| |
|
|
| T |
5130760 |
tttcgaattcatgggacttgttcaaaaaagattgaagtaattccacatatttcaagtctaatttcactaaaggatattgtgaaaggagacaatattgagg |
5130661 |
T |
|
| Q |
282 |
ttctgaatatccactcaaggtaa |
304 |
Q |
| |
|
| |||||||| |||||||||||| |
|
|
| T |
5130660 |
tgctgaatattcactcaaggtaa |
5130638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 26324244 - 26324287
Alignment:
| Q |
7 |
atcatggactaagatttacaacatcgatacttcgttcaatcctt |
50 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26324244 |
atcatggactaagatttacaacatcgatgcttcgttcaatcctt |
26324287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 209 - 304
Target Start/End: Complemental strand, 4587 - 4492
Alignment:
| Q |
209 |
tattttgaagtaatcccacacattccaagtccaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa |
304 |
Q |
| |
|
|||||||||||||| ||||| |||||||||| ||| ||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
4587 |
tattttgaagtaattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagacaatattgaggtgttgaatatccactcaaggtaa |
4492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 211 - 304
Target Start/End: Complemental strand, 16716272 - 16716179
Alignment:
| Q |
211 |
ttttgaagtaatcccacacattccaagtccaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa |
304 |
Q |
| |
|
|||| ||||||| ||||| |||||||||| ||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
16716272 |
ttttaaagtaattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagagaatattgaggtgttgaatatccactcaaggtaa |
16716179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 196
Target Start/End: Complemental strand, 16716405 - 16716299
Alignment:
| Q |
90 |
taaaacactttgaagaaggtgctgccatattgtcatatcattcctccaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaat |
189 |
Q |
| |
|
|||||||||||||||| ||||||| | |||||| ||||||||| |||||||||| ||||| || ||| | |||||||| |||| ||||||||| |
|
|
| T |
16716405 |
taaaacactttgaagagggtgctggcgtattgttatatcattcaaatgattgttttacttactatgagcctaataaatatggtgtcaagcgttttcgaat |
16716306 |
T |
|
| Q |
190 |
tcatggg |
196 |
Q |
| |
|
||||||| |
|
|
| T |
16716305 |
tcatggg |
16716299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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