View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6264-Insertion-4 (Length: 440)
Name: NF6264-Insertion-4
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6264-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 7 - 440
Target Start/End: Original strand, 33769763 - 33770196
Alignment:
| Q |
7 |
aattgttcccgacaacaaatgtgtgcaatccaatttagttccttgctaatttgtctattattatattcaaccttctaaatgaataaatacacgcaacttt |
106 |
Q |
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| T |
33769763 |
aattgttcccgacaacaaatgtgtgcaatccaatttagttccttgctaatttgtctattattatattcaaccttctaaatgaataaatacacgcaacttt |
33769862 |
T |
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| Q |
107 |
ttgactcaatttagcatgcttcatttgtttaattaaatcactttggctgaaattttaaagaaaagnnnnnnntctaaattgtgctatgtaagaacctaaa |
206 |
Q |
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| T |
33769863 |
ttgactcaatttagcatgtttcatttgtttaattaaatcactttggctgaaattttaaagaaaagaaaaaaatctaaattgtgctatgtaagaacctaaa |
33769962 |
T |
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| Q |
207 |
tttgtatacgtctgcatgaatttggattggtggtaagtttggccaaatcatgctggtaaaatgattttgtgtagcttttnnnnnnnttgcggtgactcac |
306 |
Q |
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| T |
33769963 |
tttgtatacgtctgcatgaatttggattggtggtaagtttggccaaatcatgctggtaaaatgaatttgtgtagcttttaaaaaaattgcggtgactcac |
33770062 |
T |
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| Q |
307 |
cgtgatccagtcaatctcttcggactctctgaacacgcattacctataagcatgtgtgccattttctacatgtcgagacattcttgccgtcaaaacatag |
406 |
Q |
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| T |
33770063 |
cgtgatccagtcaatctcttcggactctctgaacacgcattacctttaagcatgtgtgccattttctacatgtcgagacattcttgccgtcaaaacatag |
33770162 |
T |
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| Q |
407 |
aagctacaaaactaaacttctactaaaacgttgt |
440 |
Q |
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| T |
33770163 |
aagctacaaaactaaacttctactaaaacgttgt |
33770196 |
T |
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