View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6264-Insertion-5 (Length: 414)
Name: NF6264-Insertion-5
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6264-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 8 - 359
Target Start/End: Original strand, 25153536 - 25153893
Alignment:
| Q |
8 |
gttgtggcggttgaagagtggttggatgaatcgacaccgtattcgacgccgtgtgcgacgagtccttattatacaccacagtcttcccctacgcgtggaa |
107 |
Q |
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| T |
25153536 |
gttgtggcggttgaagagtggttggatgaatcgacgccgtattcgacgccgtgtgcgacgagtccttattatacaccacagtcttcacctacgcgtggaa |
25153635 |
T |
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| Q |
108 |
atggttgaagtgaagtgaaactaacaccatcaagagtgtgttattgaatgaaattaggtaaataagatgtattttatttttctcgtactaatttaggtta |
207 |
Q |
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| T |
25153636 |
atggttgaagtgaagtgaaactaacaccatcaagagtgtgttattgaatgaaattaggtaaataagatgtattttatttttctcgtactaatttaggtta |
25153735 |
T |
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| Q |
208 |
gtattttcaagattgttttgttagatttagattaggcaatatagctctaatgtttgttagatttgtagtaaattgatctc------ctgggtggtcactt |
301 |
Q |
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| T |
25153736 |
gtattttcaagattgttttgttagatttagattaggcaatatagctgtaatgtttgttagatttgtagtaaatcggtctcctgagtctgggtggtcattt |
25153835 |
T |
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| Q |
302 |
agttgaaagttttctcttcaacctcgagaaacttggtttgagatccgacacttagatt |
359 |
Q |
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| T |
25153836 |
agttgagagttttctcttcagcctcgagaaacttggttcgagatccgacacttagatt |
25153893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 351
Target Start/End: Original strand, 6886598 - 6886654
Alignment:
| Q |
296 |
tcacttagttgaaagttt-tctcttcaacctcgagaaacttggtttgagatccgaca |
351 |
Q |
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| T |
6886598 |
tcacttggttgaaagtttctctcttcaacctcgagaaactcggtttgaaacccgaca |
6886654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 25153892 - 25153928
Alignment:
| Q |
378 |
ttatattggtgtctctaagcacggtcaattatttgtt |
414 |
Q |
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| T |
25153892 |
ttatagtggtgtctctgagcacggtcaattatttgtt |
25153928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 351
Target Start/End: Original strand, 23431730 - 23431787
Alignment:
| Q |
295 |
gtcacttagttgaaagttt-tctcttcaacctcgagaaacttggtttgagatccgaca |
351 |
Q |
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| T |
23431730 |
gtcacttagttgaaagtttctctcttcaacttctagaaactcggtttgagacccgaca |
23431787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 343
Target Start/End: Original strand, 14433844 - 14433893
Alignment:
| Q |
295 |
gtcacttagttgaaagttt-tctcttcaacctcgagaaacttggtttgag |
343 |
Q |
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| T |
14433844 |
gtcacttggttgagagtttctctcttcaacctcgagaaactcggtttgag |
14433893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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