View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6264_high_15 (Length: 400)
Name: NF6264_high_15
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6264_high_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 11151570 - 11151303
Alignment:
| Q |
1 |
atattatacaatccgaaatatggtttggattctataatccaaataaagagtatctatgtaccacttgaatttgaatttttaacctcttcctgtttaaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11151570 |
atattatacaatccgaaatatggtttggattctataattcaaataaagagtatctatgtaccacttgaatttgaatttttaacctcttcctgtttaaagt |
11151471 |
T |
|
| Q |
101 |
ctgcatatcaaagctaaatgaattgaagaacttcaacaataatagtactataaatgtgaaattcaaaagcatatattctacagtttggttaattgttatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11151470 |
ctgcatatcaaagctaaatgaattgaagaacttcaac---aatagtactataaatgtgaaattcaaaagcatatattctacagtttggttaattgttatc |
11151374 |
T |
|
| Q |
201 |
caggtaatgaaacagggtttcttctatgttttttcatttgacattaattttatgtgcagtaatgaagacat |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11151373 |
caggtaatgaaacagggtttcttctatgttttttcatttgacattaattttatgttcagtaatgaagacat |
11151303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 333 - 392
Target Start/End: Complemental strand, 11151305 - 11151246
Alignment:
| Q |
333 |
catgaagaattccacaaatcaatattagtagtttaattttaatttctcacttcctatgct |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11151305 |
catgaagaattccacaaatcaatattagtagtttaattttaatttctcacttcctatgct |
11151246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 378
Target Start/End: Original strand, 11172945 - 11173028
Alignment:
| Q |
299 |
ggatatgaagaagttagttgtaacatataacaatcatgaagaattccacaaatcaa--tattag--tagtttaattttaatttc |
378 |
Q |
| |
|
|||| ||||||||||||| | ||||||||||||||||||| ||| |||||| ||| |||||| ||||||||||| |||||| |
|
|
| T |
11172945 |
ggatctgaagaagttagtggaaacatataacaatcatgaacaatctcacaaaccaatttattagtatagtttaatttcaatttc |
11173028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University