View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6264_high_16 (Length: 397)
Name: NF6264_high_16
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6264_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 116 - 384
Target Start/End: Original strand, 34864082 - 34864363
Alignment:
| Q |
116 |
aagaaaaaagaagatccactgcaccattgaacatggttaattgcacttcaagcgtaactaattgagtcacttttttggttattctattgctatatgatta |
215 |
Q |
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| T |
34864082 |
aagaaaaaagaagatccactgcaccattgaacatggttaattgcactttaagcgtaactaattgagtcacttttttggttatgctattgctatatgatta |
34864181 |
T |
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| Q |
216 |
tgctaaaacaaacaaataatagactcat--aatcaaaaacatcatattccactaatcagtcaatgtgcacaacagaagtaccggaaatcaccaagcc--- |
310 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
34864182 |
tgctaaaacaaacaaataatagagtcataaaatcaaaaacatcatattccactaatcagtcaatgtgcacaacagaagtactggaaattaccaagccata |
34864281 |
T |
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| Q |
311 |
--------aagaacaatttatgtcacaacacagtacaagaaaataaagtgggttttccatacaactgtaaaatgcataaatt |
384 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34864282 |
ttcagaaaaagaacaatttatgttacaacacagtacaagaaaataaagtgggttttccatacaactgtaaaatgcataaatt |
34864363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 34861003 - 34861082
Alignment:
| Q |
44 |
ccattttcagataacaaatcatcccccatccatcaacttcaagatcaatgccacacttacttgatcatcataaagaaaaa |
123 |
Q |
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| T |
34861003 |
ccattttcagataacaaatcatcccccatccatcaacttcaagatcaatgccacacttacttgatcatcataaagaaaaa |
34861082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 285
Target Start/End: Original strand, 7945218 - 7945246
Alignment:
| Q |
257 |
atattccactaatcagtcaatgtgcacaa |
285 |
Q |
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| T |
7945218 |
atattccactaatcagtcaatgtgcacaa |
7945246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 357
Target Start/End: Complemental strand, 51860187 - 51860141
Alignment:
| Q |
311 |
aagaacaatttatgtcacaacacagtacaagaaaataaagtgggttt |
357 |
Q |
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||||||||| || ||||||||||| |||||||||||||||||||||| |
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| T |
51860187 |
aagaacaatgtaagtcacaacacaatacaagaaaataaagtgggttt |
51860141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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