View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6264_high_2 (Length: 747)

Name: NF6264_high_2
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6264_high_2
NF6264_high_2
[»] chr4 (21 HSPs)
chr4 (17-193)||(39292503-39292681)
chr4 (606-731)||(39292080-39292209)
chr4 (93-166)||(39235421-39235494)
chr4 (91-154)||(39047759-39047822)
chr4 (93-166)||(39053763-39053836)
chr4 (441-502)||(36203229-36203290)
chr4 (319-363)||(37175798-37175842)
chr4 (319-363)||(39292309-39292353)
chr4 (451-502)||(20096287-20096338)
chr4 (451-501)||(13121538-13121588)
chr4 (446-504)||(13276120-13276178)
chr4 (452-490)||(18541506-18541544)
chr4 (451-501)||(18635524-18635574)
chr4 (456-502)||(22164291-22164337)
chr4 (456-502)||(29737666-29737712)
chr4 (459-501)||(33024150-33024192)
chr4 (456-502)||(43722758-43722804)
chr4 (447-504)||(8494978-8495035)
chr4 (439-504)||(11286786-11286851)
chr4 (451-496)||(38374956-38375001)
chr4 (447-504)||(38812862-38812919)
[»] chr7 (15 HSPs)
chr7 (93-166)||(7562764-7562837)
chr7 (439-502)||(964746-964809)
chr7 (446-497)||(1285081-1285132)
chr7 (439-504)||(3584195-3584260)
chr7 (456-505)||(22267571-22267620)
chr7 (317-362)||(24934749-24934794)
chr7 (450-498)||(3948051-3948099)
chr7 (451-503)||(35222916-35222968)
chr7 (446-502)||(42829246-42829302)
chr7 (461-504)||(20762831-20762874)
chr7 (451-502)||(30857241-30857292)
chr7 (440-502)||(1399155-1399217)
chr7 (448-482)||(28479870-28479904)
chr7 (440-501)||(5352323-5352384)
chr7 (445-482)||(37307885-37307922)
[»] chr1 (21 HSPs)
chr1 (456-503)||(22388197-22388244)
chr1 (456-503)||(41573291-41573338)
chr1 (444-503)||(43840335-43840394)
chr1 (452-502)||(41998344-41998394)
chr1 (448-501)||(2884462-2884515)
chr1 (452-504)||(18091194-18091247)
chr1 (440-501)||(27853349-27853410)
chr1 (451-500)||(44220982-44221031)
chr1 (439-495)||(49868011-49868067)
chr1 (439-502)||(7732415-7732478)
chr1 (451-502)||(16033467-16033518)
chr1 (456-503)||(29701342-29701389)
chr1 (451-498)||(41974758-41974805)
chr1 (456-502)||(30678835-30678881)
chr1 (445-503)||(41032923-41032981)
chr1 (451-501)||(44641521-44641571)
chr1 (456-497)||(9116894-9116935)
chr1 (439-504)||(11014223-11014288)
chr1 (439-500)||(23772282-23772343)
chr1 (439-472)||(27687617-27687650)
chr1 (446-503)||(41973247-41973304)
[»] chr2 (23 HSPs)
chr2 (446-504)||(11931596-11931654)
chr2 (451-502)||(29896311-29896362)
chr2 (448-498)||(1238159-1238209)
chr2 (451-504)||(3197096-3197149)
chr2 (456-493)||(3904204-3904241)
chr2 (456-504)||(28277698-28277746)
chr2 (448-504)||(45032684-45032740)
chr2 (457-504)||(6238587-6238634)
chr2 (439-482)||(7262819-7262862)
chr2 (451-502)||(27244650-27244701)
chr2 (451-498)||(34364512-34364559)
chr2 (439-482)||(37830726-37830769)
chr2 (451-501)||(6723094-6723144)
chr2 (446-500)||(7537105-7537159)
chr2 (446-504)||(9517021-9517079)
chr2 (315-349)||(17897868-17897902)
chr2 (455-501)||(43356654-43356700)
chr2 (452-497)||(13922650-13922695)
chr2 (439-476)||(30045472-30045509)
chr2 (439-476)||(30050635-30050672)
chr2 (439-476)||(30141679-30141716)
chr2 (448-497)||(30929059-30929108)
chr2 (315-352)||(39955494-39955531)
[»] chr8 (15 HSPs)
chr8 (451-504)||(7553670-7553723)
chr8 (315-362)||(3036534-3036581)
chr8 (439-482)||(24696011-24696054)
chr8 (446-504)||(26886054-26886112)
chr8 (446-502)||(8837913-8837969)
chr8 (451-502)||(6109162-6109213)
chr8 (446-501)||(6447183-6447238)
chr8 (444-503)||(13575281-13575340)
chr8 (451-498)||(33482166-33482213)
chr8 (448-502)||(8687859-8687913)
chr8 (452-501)||(8982561-8982610)
chr8 (439-496)||(10601762-10601819)
chr8 (451-504)||(14303156-14303209)
chr8 (456-501)||(32223901-32223946)
chr8 (451-504)||(33620889-33620942)
[»] chr6 (11 HSPs)
chr6 (439-482)||(2692228-2692271)
chr6 (457-501)||(7927694-7927738)
chr6 (315-363)||(28478663-28478711)
chr6 (315-363)||(29791118-29791166)
chr6 (451-502)||(12412270-12412321)
chr6 (439-501)||(8809300-8809362)
chr6 (455-501)||(12336347-12336393)
chr6 (459-501)||(21884981-21885023)
chr6 (449-502)||(2445292-2445345)
chr6 (449-502)||(3373396-3373449)
chr6 (439-504)||(31971520-31971585)
[»] chr5 (11 HSPs)
chr5 (451-502)||(40445976-40446027)
chr5 (439-504)||(1082224-1082289)
chr5 (446-506)||(8545001-8545061)
chr5 (456-504)||(10531531-10531579)
chr5 (444-498)||(17046331-17046385)
chr5 (456-502)||(28447486-28447532)
chr5 (451-509)||(34436837-34436895)
chr5 (456-501)||(4432110-4432155)
chr5 (451-484)||(7861018-7861051)
chr5 (439-504)||(8885246-8885311)
chr5 (452-501)||(42663222-42663271)
[»] chr3 (19 HSPs)
chr3 (456-503)||(7827500-7827547)
chr3 (456-503)||(7829888-7829935)
chr3 (451-502)||(32753821-32753872)
chr3 (452-507)||(48924337-48924392)
chr3 (451-497)||(48517669-48517715)
chr3 (451-496)||(12976619-12976664)
chr3 (451-503)||(28093346-28093398)
chr3 (446-504)||(7738660-7738718)
chr3 (446-496)||(10922320-10922370)
chr3 (444-494)||(39869817-39869867)
chr3 (446-500)||(46226089-46226143)
chr3 (456-501)||(7464513-7464558)
chr3 (451-500)||(8139710-8139759)
chr3 (439-504)||(9598430-9598495)
chr3 (456-505)||(22462302-22462351)
chr3 (456-505)||(23332640-23332689)
chr3 (451-504)||(28052399-28052452)
chr3 (315-352)||(31110632-31110669)
chr3 (448-501)||(38387966-38388019)
[»] scaffold0160 (1 HSPs)
scaffold0160 (439-502)||(22904-22967)
[»] scaffold0143 (1 HSPs)
scaffold0143 (451-498)||(4463-4510)
[»] scaffold0016 (1 HSPs)
scaffold0016 (451-501)||(99031-99081)
[»] scaffold0045 (2 HSPs)
scaffold0045 (452-501)||(63856-63905)
scaffold0045 (452-501)||(71188-71237)


Alignment Details
Target: chr4 (Bit Score: 137; Significance: 4e-71; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 39292681 - 39292503
Alignment:
Q  17 tcaattactaagtcttatattcggtaatttaattaacacttgtgttctgctttgtaatatnnnnnnnnn--ccttgtattgtgcagtatatacttgaaac 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||    
T  39292681 tcaactactaagtcttatattcggtaatttaattaacacttgtgttctgctttgtaatataaaaaaaaaaaccttgtattgtgcagtatatacttgaaac 39292582  T
Q  115 aagcgtgtttccaagagaacacccatgcttgaaggagcttagggagatgacactaacacaccctaagtaagaccgtaga 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39292581 aagcgtgtttccaagagaacacccatgcttgaaggagcttagggagatgacactaacacaccctaagtaagaccgtaga 39292503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 606 - 731
Target Start/End: Complemental strand, 39292209 - 39292080
Alignment:
Q  606 taatgttttaaatgaatctcaattactcaaatcttgaaagtttacacataaagatgtattaattaattaat----gacatacacgattgatgttgtaaaa 701  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  39292209 taatgttttaaatgaatctcaattactcatatcttcaaagtttacacataaagatgtattaattaattaattaatgacatacacgattgatgttgtaaaa 39292110  T
Q  702 caggtatatgatggctacacccggtgatga 731  Q
    ||||||||||||||||||||||||||||||    
T  39292109 caggtatatgatggctacacccggtgatga 39292080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 39235421 - 39235494
Alignment:
Q  93 ttgtgcagtatatacttgaaacaagcgtgtttccaagagaacacccatgcttgaaggagcttagggagatgaca 166  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||  | |||||||||    
T  39235421 ttgtgcagtatatacttgacacaagtgtgtttccaagagaacacccttgcttgaaggagctccgtgagatgaca 39235494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 91 - 154
Target Start/End: Original strand, 39047759 - 39047822
Alignment:
Q  91 tattgtgcagtatatacttgaaacaagcgtgtttccaagagaacacccatgcttgaaggagctt 154  Q
    ||||||||||||||||||||| || || |||||||||||||| |||||||||||||||||||||    
T  39047759 tattgtgcagtatatacttgagaccagtgtgtttccaagagagcacccatgcttgaaggagctt 39047822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 39053763 - 39053836
Alignment:
Q  93 ttgtgcagtatatacttgaaacaagcgtgtttccaagagaacacccatgcttgaaggagcttagggagatgaca 166  Q
    ||||||||||||||||||| ||||| ||||||||||  |||||||| ||||||||||||||| | |||||||||    
T  39053763 ttgtgcagtatatacttgacacaagtgtgtttccaaatgaacacccttgcttgaaggagcttcgtgagatgaca 39053836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 441 - 502
Target Start/End: Complemental strand, 36203290 - 36203229
Alignment:
Q  441 aatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 502  Q
    ||||||||| |||| |||||||||||||||||| |||||||| |  ||| ||||||||||||    
T  36203290 aatctcggaccttgcatatattatgcattgtccttatcaactgagctaagctcacgaggaca 36203229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 319 - 363
Target Start/End: Original strand, 37175798 - 37175842
Alignment:
Q  319 aatatgttgaatgcataatttttaagataaagttgctactttaag 363  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||    
T  37175798 aataagttgaatgcataatttccaagataaagttgctactttaag 37175842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 319 - 363
Target Start/End: Complemental strand, 39292353 - 39292309
Alignment:
Q  319 aatatgttgaatgcataatttttaagataaagttgctactttaag 363  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||    
T  39292353 aataagttgaatgcataatttccaagataaagttgctactttaag 39292309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 451 - 502
Target Start/End: Original strand, 20096287 - 20096338
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 502  Q
    |||| |||||||||||||| |||||| ||||| | |||||||||||||||||    
T  20096287 cttgcatatattatgcattatccctaccaactgagttaaactcacgaggaca 20096338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 451 - 501
Target Start/End: Complemental strand, 13121588 - 13121538
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 501  Q
    |||| ||||||||||||||||||||| |||||||  ||| |||||||||||    
T  13121588 cttgcatatattatgcattgtccctaccaactaagctaagctcacgaggac 13121538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 446 - 504
Target Start/End: Complemental strand, 13276178 - 13276120
Alignment:
Q  446 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 504  Q
    |||| |||| ||||||||||||||||||||| ||| | | |||| ||||||||||||||    
T  13276178 cggaccttgcatatattatgcattgtccctaccaattgagttaagctcacgaggacaaa 13276120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 452 - 490
Target Start/End: Complemental strand, 18541544 - 18541506
Alignment:
Q  452 ttgtatatattatgcattgtccctatcaactaaattaaa 490  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  18541544 ttgtatatattatgcattgtttctatcaactaaattaaa 18541506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 451 - 501
Target Start/End: Complemental strand, 18635574 - 18635524
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 501  Q
    ||||||||||||||||||||||| |||||||| | |||| |||||| ||||    
T  18635574 cttgtatatattatgcattgtccttatcaactgagttaagctcacggggac 18635524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 456 - 502
Target Start/End: Original strand, 22164291 - 22164337
Alignment:
Q  456 atatattatgcattgtccctatcaactaaattaaactcacgaggaca 502  Q
    |||||||||||||||| |||| |||||||  ||||||||||||||||    
T  22164291 atatattatgcattgttcctaccaactaagctaaactcacgaggaca 22164337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 456 - 502
Target Start/End: Complemental strand, 29737712 - 29737666
Alignment:
Q  456 atatattatgcattgtccctatcaactaaattaaactcacgaggaca 502  Q
    |||||||||||||||| |||| |||||||||||| ||||| ||||||    
T  29737712 atatattatgcattgttcctagcaactaaattaagctcacaaggaca 29737666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 459 - 501
Target Start/End: Complemental strand, 33024192 - 33024150
Alignment:
Q  459 tattatgcattgtccctatcaactaaattaaactcacgaggac 501  Q
    ||||||||||||||| || ||||||| ||||||||||||||||    
T  33024192 tattatgcattgtccataccaactaagttaaactcacgaggac 33024150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 456 - 502
Target Start/End: Complemental strand, 43722804 - 43722758
Alignment:
Q  456 atatattatgcattgtccctatcaactaaattaaactcacgaggaca 502  Q
    |||||||||||||||||| || ||||| | |||||||||||||||||    
T  43722804 atatattatgcattgtccataccaactgagttaaactcacgaggaca 43722758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 447 - 504
Target Start/End: Complemental strand, 8495035 - 8494978
Alignment:
Q  447 ggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 504  Q
    |||||||| ||||||||||||||||||||| ||||| |  |||  |||||||||||||    
T  8495035 ggatcttgcatatattatgcattgtccctaccaactgagctaagttcacgaggacaaa 8494978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 504
Target Start/End: Original strand, 11286786 - 11286851
Alignment:
Q  439 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 504  Q
    |||||||| || |||| ||||||||||||||||| ||| ||||| || ||| |||| |||||||||    
T  11286786 tgaatctcagaccttgcatatattatgcattgtctctaccaactgaactaagctcaggaggacaaa 11286851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 451 - 496
Target Start/End: Complemental strand, 38375001 - 38374956
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacg 496  Q
    |||| ||||||||||||||||||||| ||||||| |||| ||||||    
T  38375001 cttgcatatattatgcattgtccctaccaactaagttaagctcacg 38374956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 447 - 504
Target Start/End: Original strand, 38812862 - 38812919
Alignment:
Q  447 ggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 504  Q
    |||||||| ||||||||||||||||||||| | ||| |  |||||||||||| |||||    
T  38812862 ggatcttgcatatattatgcattgtccctaccgactgagctaaactcacgagaacaaa 38812919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 7562764 - 7562837
Alignment:
Q  93 ttgtgcagtatatacttgaaacaagcgtgtttccaagagaacacccatgcttgaaggagcttagggagatgaca 166  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||  | |||||||||    
T  7562764 ttgtgcagtatatacttgacacaagtgtgtttccaagagaacacccttgcttgaaggagctccgtgagatgaca 7562837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 439 - 502
Target Start/End: Original strand, 964746 - 964809
Alignment:
Q  439 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 502  Q
    ||||||||||||||| |||||||||||||||||  ||||| ||| | |||| ||||||||||||    
T  964746 tgaatctcggatcttatatatattatgcattgtttctatcgactgagttaagctcacgaggaca 964809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 446 - 497
Target Start/End: Original strand, 1285081 - 1285132
Alignment:
Q  446 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacga 497  Q
    ||||||||| |||||||||||||||| |||||||||| | ||||||||||||    
T  1285081 cggatcttgcatatattatgcattgttcctatcaactgagttaaactcacga 1285132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 439 - 504
Target Start/End: Complemental strand, 3584260 - 3584195
Alignment:
Q  439 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 504  Q
    ||||||||| | |||| |||||||||||||||||| || ||||||| |||| ||| ||||||||||    
T  3584260 tgaatctcgtaccttgcatatattatgcattgtccttaccaactaagttaagctcgcgaggacaaa 3584195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 456 - 505
Target Start/End: Complemental strand, 22267620 - 22267571
Alignment:
Q  456 atatattatgcattgtccctatcaactaaattaaactcacgaggacaaag 505  Q
    ||||||||||||||||| ||| ||||| | ||||||||||||||||||||    
T  22267620 atatattatgcattgtctctaccaactgagttaaactcacgaggacaaag 22267571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 317 - 362
Target Start/End: Complemental strand, 24934794 - 24934749
Alignment:
Q  317 ttaatatgttgaatgcataatttttaagataaagttgctactttaa 362  Q
    |||||| |||||||||| ||||| ||||||||||||||||||||||    
T  24934794 ttaataagttgaatgcacaatttctaagataaagttgctactttaa 24934749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 450 - 498
Target Start/End: Complemental strand, 3948099 - 3948051
Alignment:
Q  450 tcttgtatatattatgcattgtccctatcaactaaattaaactcacgag 498  Q
    ||||| ||||||||||||||||| ||||||||| | |||||||||||||    
T  3948099 tcttgcatatattatgcattgtctctatcaactgagttaaactcacgag 3948051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 451 - 503
Target Start/End: Complemental strand, 35222968 - 35222916
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 503  Q
    |||| |||||| |||||||||||||||||||| |  |||||||||||||||||    
T  35222968 cttgcatatatcatgcattgtccctatcaactgacctaaactcacgaggacaa 35222916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 446 - 502
Target Start/End: Original strand, 42829246 - 42829302
Alignment:
Q  446 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 502  Q
    |||| |||| ||||||||||||||||||||||||||| | | || ||||||||||||    
T  42829246 cggagcttgcatatattatgcattgtccctatcaactgagtcaagctcacgaggaca 42829302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 461 - 504
Target Start/End: Complemental strand, 20762874 - 20762831
Alignment:
Q  461 ttatgcattgtccctatcaactaaattaaactcacgaggacaaa 504  Q
    ||||||||||| |||||||||| || ||||||||||||||||||    
T  20762874 ttatgcattgttcctatcaactgaactaaactcacgaggacaaa 20762831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 451 - 502
Target Start/End: Complemental strand, 30857292 - 30857241
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 502  Q
    |||| |||||||||||||||||| || |||||||  ||||||||||||||||    
T  30857292 cttgcatatattatgcattgtccataccaactaagctaaactcacgaggaca 30857241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 440 - 502
Target Start/End: Complemental strand, 1399217 - 1399155
Alignment:
Q  440 gaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 502  Q
    ||||||| || |||| |||||| ||||||||||| || ||||| | |||||||||||||||||    
T  1399217 gaatctcagaccttgcatatatcatgcattgtccataccaactgagttaaactcacgaggaca 1399155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 482
Target Start/End: Original strand, 28479870 - 28479904
Alignment:
Q  448 gatcttgtatatattatgcattgtccctatcaact 482  Q
    |||||||||||||||||||||||||| ||||||||    
T  28479870 gatcttgtatatattatgcattgtccttatcaact 28479904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 440 - 501
Target Start/End: Complemental strand, 5352384 - 5352323
Alignment:
Q  440 gaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 501  Q
    |||||||||| ||||||||||||||| ||||||| || ||||| |  ||| |||||||||||    
T  5352384 gaatctcggaccttgtatatattatgtattgtccttaccaactgagctaagctcacgaggac 5352323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 445 - 482
Target Start/End: Original strand, 37307885 - 37307922
Alignment:
Q  445 tcggatcttgtatatattatgcattgtccctatcaact 482  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  37307885 tcggatcttgcatatattatgcattgttcctatcaact 37307922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 456 - 503
Target Start/End: Original strand, 22388197 - 22388244
Alignment:
Q  456 atatattatgcattgtccctatcaactaaattaaactcacgaggacaa 503  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  22388197 atatattatgcattgtccctatcaactaagttaaacttacgaggacaa 22388244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 456 - 503
Target Start/End: Original strand, 41573291 - 41573338
Alignment:
Q  456 atatattatgcattgtccctatcaactaaattaaactcacgaggacaa 503  Q
    ||||||||||||||||||||| ||||| | ||||||||||||||||||    
T  41573291 atatattatgcattgtccctaccaactgagttaaactcacgaggacaa 41573338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 444 - 503
Target Start/End: Original strand, 43840335 - 43840394
Alignment:
Q  444 ctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 503  Q
    ||||||||||  |||| ||||||||||||| |||||||| | ||||||||||||||||||    
T  43840335 ctcggatcttacatattttatgcattgtccatatcaactgagttaaactcacgaggacaa 43840394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 452 - 502
Target Start/End: Complemental strand, 41998394 - 41998344
Alignment:
Q  452 ttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 502  Q
    |||||||||||||| |||||||||||||||| | |||| ||||||||||||    
T  41998394 ttgtatatattatgaattgtccctatcaactgagttaatctcacgaggaca 41998344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 448 - 501
Target Start/End: Original strand, 2884462 - 2884515
Alignment:
Q  448 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 501  Q
    |||||||||||||||||||||||||| |||||||| | ||||  ||||||||||    
T  2884462 gatcttgtatatattatgcattgtccatatcaactgagttaaggtcacgaggac 2884515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 452 - 504
Target Start/End: Complemental strand, 18091247 - 18091194
Alignment:
Q  452 ttgtatatatt-atgcattgtccctatcaactaaattaaactcacgaggacaaa 504  Q
    ||||||||||| |||||||||||||||||||| | |||| ||||||||||||||    
T  18091247 ttgtatatatttatgcattgtccctatcaactgagttaagctcacgaggacaaa 18091194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 440 - 501
Target Start/End: Complemental strand, 27853410 - 27853349
Alignment:
Q  440 gaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 501  Q
    ||||| |||||||||||||||||||||||||| | || ||||| | |||| |||||||||||    
T  27853410 gaatcccggatcttgtatatattatgcattgttcataccaactgagttaagctcacgaggac 27853349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 451 - 500
Target Start/End: Complemental strand, 44221031 - 44220982
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgagga 500  Q
    |||||||||||| ||||||||| ||||||||||| |||| ||||||||||    
T  44221031 cttgtatatattgtgcattgtctctatcaactaagttaagctcacgagga 44220982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 439 - 495
Target Start/End: Complemental strand, 49868067 - 49868011
Alignment:
Q  439 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcac 495  Q
    ||||||||||| |||| |||||||||||||| ||| |||||||| | ||||||||||    
T  49868067 tgaatctcggaccttgcatatattatgcattatccatatcaactgagttaaactcac 49868011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 502
Target Start/End: Complemental strand, 7732478 - 7732415
Alignment:
Q  439 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 502  Q
    |||||| ||||||||| |||||||||||||| |||  ||||||| |  ||||||||||||||||    
T  7732478 tgaatcccggatcttggatatattatgcattatccaaatcaactgagctaaactcacgaggaca 7732415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 451 - 502
Target Start/End: Original strand, 16033467 - 16033518
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 502  Q
    |||| ||||||||||||||||||||||||||| | | || ||||||||||||    
T  16033467 cttgcatatattatgcattgtccctatcaactgagtcaagctcacgaggaca 16033518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 456 - 503
Target Start/End: Original strand, 29701342 - 29701389
Alignment:
Q  456 atatattatgcattgtccctatcaactaaattaaactcacgaggacaa 503  Q
    |||||||||||||||||| |||||||||| |||| ||||||| |||||    
T  29701342 atatattatgcattgtccatatcaactaagttaagctcacgaagacaa 29701389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 451 - 498
Target Start/End: Complemental strand, 41974805 - 41974758
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgag 498  Q
    |||| |||||||||||||| |||||||||||| || ||||||||||||    
T  41974805 cttgcatatattatgcattatccctatcaactgaactaaactcacgag 41974758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 456 - 502
Target Start/End: Original strand, 30678835 - 30678881
Alignment:
Q  456 atatattatgcattgtccctatcaactaaattaaactcacgaggaca 502  Q
    ||||||||||||||||||||| ||||| | |||| ||||||||||||    
T  30678835 atatattatgcattgtccctaccaactgagttaagctcacgaggaca 30678881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 445 - 503
Target Start/End: Complemental strand, 41032981 - 41032923
Alignment:
Q  445 tcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 503  Q
    ||||| ||||||||| ||||||||||| | |||||||| | |||| |||||||||||||    
T  41032981 tcggaccttgtatattttatgcattgttcatatcaactgagttaagctcacgaggacaa 41032923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 451 - 501
Target Start/End: Complemental strand, 44641571 - 44641521
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 501  Q
    |||| |||||||||||||||||| |||||||| |  |||||||||||||||    
T  44641571 cttgcatatattatgcattgtccatatcaactgagctaaactcacgaggac 44641521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 456 - 497
Target Start/End: Original strand, 9116894 - 9116935
Alignment:
Q  456 atatattatgcattgtccctatcaactaaattaaactcacga 497  Q
    |||||||||||||||||| |||||||| | ||||||||||||    
T  9116894 atatattatgcattgtccatatcaactgagttaaactcacga 9116935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 504
Target Start/End: Complemental strand, 11014288 - 11014223
Alignment:
Q  439 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 504  Q
    |||||| || |||||| |||||||||||| |||| ||| ||||| |  ||||||||||||||||||    
T  11014288 tgaatcccgaatcttgcatatattatgcactgtctctaccaactgagctaaactcacgaggacaaa 11014223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 500
Target Start/End: Original strand, 23772282 - 23772343
Alignment:
Q  439 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgagga 500  Q
    |||||||| ||||||||||||||||| |||||| ||||  |||| || |||| |||||||||    
T  23772282 tgaatctcagatcttgtatatattatacattgttcctacaaactgaactaaattcacgagga 23772343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 472
Target Start/End: Original strand, 27687617 - 27687650
Alignment:
Q  439 tgaatctcggatcttgtatatattatgcattgtc 472  Q
    ||||||||| ||||||||||||||||||||||||    
T  27687617 tgaatctcgtatcttgtatatattatgcattgtc 27687650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 446 - 503
Target Start/End: Complemental strand, 41973304 - 41973247
Alignment:
Q  446 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 503  Q
    |||| |||| ||||||||||||||||||||| ||| ||| |||| ||| |||||||||    
T  41973304 cggaccttgcatatattatgcattgtccctaccaattaagttaagctcgcgaggacaa 41973247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 446 - 504
Target Start/End: Complemental strand, 11931654 - 11931596
Alignment:
Q  446 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 504  Q
    ||||||||| ||||||||||||||||||||| ||| |||| ||| ||||||||||||||    
T  11931654 cggatcttgcatatattatgcattgtccctaccaattaaactaagctcacgaggacaaa 11931596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 451 - 502
Target Start/End: Original strand, 29896311 - 29896362
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 502  Q
    |||| ||||||||||||||||  ||||||||| |||||||||||||||||||    
T  29896311 cttgcatatattatgcattgtttctatcaactgaattaaactcacgaggaca 29896362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 448 - 498
Target Start/End: Complemental strand, 1238209 - 1238159
Alignment:
Q  448 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacgag 498  Q
    ||||||||||||||||||||||||||||||||| | | |||| ||||||||    
T  1238209 gatcttgtatatattatgcattgtccctatcaattgagttaagctcacgag 1238159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 451 - 504
Target Start/End: Original strand, 3197096 - 3197149
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 504  Q
    |||| ||||||||||||||||||||| ||||| |  ||||||||||||||||||    
T  3197096 cttgcatatattatgcattgtccctaccaactgagctaaactcacgaggacaaa 3197149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 456 - 493
Target Start/End: Complemental strand, 3904241 - 3904204
Alignment:
Q  456 atatattatgcattgtccctatcaactaaattaaactc 493  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  3904241 atatattatgcattgtccctatcaactaagttaaactc 3904204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 456 - 504
Target Start/End: Original strand, 28277698 - 28277746
Alignment:
Q  456 atatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 504  Q
    |||||||||||||||||| || |||||||  ||||||||||||||||||    
T  28277698 atatattatgcattgtccttaccaactaagctaaactcacgaggacaaa 28277746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 448 - 504
Target Start/End: Complemental strand, 45032740 - 45032684
Alignment:
Q  448 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 504  Q
    ||||||| ||||||||||||||||||||| ||||| |  ||| ||||||||||||||    
T  45032740 gatcttgcatatattatgcattgtccctaccaactgaggtaagctcacgaggacaaa 45032684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 504
Target Start/End: Original strand, 6238587 - 6238634
Alignment:
Q  457 tatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 504  Q
    |||||||||||||||||||| ||| |||  ||||||||||||||||||    
T  6238587 tatattatgcattgtccctaccaattaagctaaactcacgaggacaaa 6238634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 482
Target Start/End: Complemental strand, 7262862 - 7262819
Alignment:
Q  439 tgaatctcggatcttgtatatattatgcattgtccctatcaact 482  Q
    |||||||  |||||||||||||||||||||||||| ||||||||    
T  7262862 tgaatctttgatcttgtatatattatgcattgtccatatcaact 7262819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 451 - 502
Target Start/End: Complemental strand, 27244701 - 27244650
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 502  Q
    |||| ||||||||||||||||||||||||||| |  ||| ||||||||||||    
T  27244701 cttgcatatattatgcattgtccctatcaactgagctaagctcacgaggaca 27244650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 451 - 498
Target Start/End: Original strand, 34364512 - 34364559
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgag 498  Q
    ||||||||||||||||||| | |||| ||||||| |||||||||||||    
T  34364512 cttgtatatattatgcattattcctaccaactaagttaaactcacgag 34364559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 482
Target Start/End: Complemental strand, 37830769 - 37830726
Alignment:
Q  439 tgaatctcggatcttgtatatattatgcattgtccctatcaact 482  Q
    ||||||| ||||||||||||||||||| |||||||||| |||||    
T  37830769 tgaatcttggatcttgtatatattatgtattgtccctaccaact 37830726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 451 - 501
Target Start/End: Original strand, 6723094 - 6723144
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 501  Q
    |||| ||||||||| |||||||| |||||||| | ||||||||||||||||    
T  6723094 cttgcatatattatacattgtccatatcaactgagttaaactcacgaggac 6723144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 446 - 500
Target Start/End: Complemental strand, 7537159 - 7537105
Alignment:
Q  446 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgagga 500  Q
    |||| |||| |||||||||||||||| |||||||||| | |||| ||||||||||    
T  7537159 cggaccttgcatatattatgcattgttcctatcaactgagttaatctcacgagga 7537105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 446 - 504
Target Start/End: Original strand, 9517021 - 9517079
Alignment:
Q  446 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 504  Q
    |||||||||||||||||||||||||| | || ||||| |  ||| ||||||||||||||    
T  9517021 cggatcttgtatatattatgcattgttcataccaactgagctaatctcacgaggacaaa 9517079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 315 - 349
Target Start/End: Original strand, 17897868 - 17897902
Alignment:
Q  315 ttttaatatgttgaatgcataatttttaagataaa 349  Q
    ||||||||||||||||||| |||||||||||||||    
T  17897868 ttttaatatgttgaatgcacaatttttaagataaa 17897902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 455 - 501
Target Start/End: Original strand, 43356654 - 43356700
Alignment:
Q  455 tatatattatgcattgtccctatcaactaaattaaactcacgaggac 501  Q
    |||||||||||||||||||||| |||||||  ||||||||| |||||    
T  43356654 tatatattatgcattgtccctaacaactaagataaactcactaggac 43356700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 497
Target Start/End: Original strand, 13922650 - 13922695
Alignment:
Q  452 ttgtatatattatgcattgtccctatcaactaaattaaactcacga 497  Q
    ||||||||||||||||||||||||| ||||| | |||| |||||||    
T  13922650 ttgtatatattatgcattgtccctaccaactgagttaagctcacga 13922695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 476
Target Start/End: Complemental strand, 30045509 - 30045472
Alignment:
Q  439 tgaatctcggatcttgtatatattatgcattgtcccta 476  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  30045509 tgaatctcgaaccttgtatatattatgcattgtcccta 30045472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 476
Target Start/End: Complemental strand, 30050672 - 30050635
Alignment:
Q  439 tgaatctcggatcttgtatatattatgcattgtcccta 476  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  30050672 tgaatctcgaaccttgtatatattatgcattgtcccta 30050635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 476
Target Start/End: Complemental strand, 30141716 - 30141679
Alignment:
Q  439 tgaatctcggatcttgtatatattatgcattgtcccta 476  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  30141716 tgaatctcgaaccttgtatatattatgcattgtcccta 30141679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 448 - 497
Target Start/End: Original strand, 30929059 - 30929108
Alignment:
Q  448 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacga 497  Q
    |||||| ||||||||||||||||||| |||||||| | ||||||| ||||    
T  30929059 gatcttatatatattatgcattgtccatatcaactgagttaaacttacga 30929108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 39955494 - 39955531
Alignment:
Q  315 ttttaatatgttgaatgcataatttttaagataaagtt 352  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  39955494 ttttaatatgttgaatgcacaattttaaagataaagtt 39955531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 451 - 504
Target Start/End: Complemental strand, 7553723 - 7553670
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 504  Q
    |||| ||||||||||||||||||||| ||||| | |||||||||||||||||||    
T  7553723 cttgcatatattatgcattgtccctaccaactgagttaaactcacgaggacaaa 7553670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 315 - 362
Target Start/End: Original strand, 3036534 - 3036581
Alignment:
Q  315 ttttaatatgttgaatgcataatttttaagataaagttgctactttaa 362  Q
    |||||||| ||||||| || ||||||||||||||||||||||||||||    
T  3036534 ttttaataagttgaatacacaatttttaagataaagttgctactttaa 3036581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 439 - 482
Target Start/End: Original strand, 24696011 - 24696054
Alignment:
Q  439 tgaatctcggatcttgtatatattatgcattgtccctatcaact 482  Q
    |||||||||||||||| |||||||||||||||||| ||||||||    
T  24696011 tgaatctcggatcttgcatatattatgcattgtccatatcaact 24696054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 446 - 504
Target Start/End: Original strand, 26886054 - 26886112
Alignment:
Q  446 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 504  Q
    ||||||||  |||| ||||||||||||| || ||||||| |||||||||||||||||||    
T  26886054 cggatcttacatattttatgcattgtccataccaactaagttaaactcacgaggacaaa 26886112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 446 - 502
Target Start/End: Complemental strand, 8837969 - 8837913
Alignment:
Q  446 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 502  Q
    |||| |||||||||||||||||||||||||||||||  | ||||  |||||||||||    
T  8837969 cggaccttgtatatattatgcattgtccctatcaaccgagttaagttcacgaggaca 8837913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 451 - 502
Target Start/End: Complemental strand, 6109213 - 6109162
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 502  Q
    ||||||||| ||||||||||||| |||||||| |  ||||||||||||||||    
T  6109213 cttgtatattttatgcattgtccatatcaactgatataaactcacgaggaca 6109162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 446 - 501
Target Start/End: Complemental strand, 6447238 - 6447183
Alignment:
Q  446 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 501  Q
    |||| |||| |||||||||||||||||| || ||||| | ||||||||||||||||    
T  6447238 cggaccttgcatatattatgcattgtccataccaactgagttaaactcacgaggac 6447183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 503
Target Start/End: Complemental strand, 13575340 - 13575281
Alignment:
Q  444 ctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 503  Q
    |||||| |||| |||| |||||||||||||||| ||||| |  |||||||||||||||||    
T  13575340 ctcggaacttgcatatgttatgcattgtccctaccaactgagctaaactcacgaggacaa 13575281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 451 - 498
Target Start/End: Original strand, 33482166 - 33482213
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgag 498  Q
    |||| ||| |||||||||||||||||||||||||  ||||||||||||    
T  33482166 cttgcataaattatgcattgtccctatcaactaagctaaactcacgag 33482213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 502
Target Start/End: Complemental strand, 8687913 - 8687859
Alignment:
Q  448 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 502  Q
    ||||||||||||||||| ||||||||||| ||| | | ||||| |||||||||||    
T  8687913 gatcttgtatatattatacattgtccctaccaattgagttaaattcacgaggaca 8687859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 501
Target Start/End: Complemental strand, 8982610 - 8982561
Alignment:
Q  452 ttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 501  Q
    |||||||||||||||||||| | ||  |||| ||||||||||||||||||    
T  8982610 ttgtatatattatgcattgttcatactaactgaattaaactcacgaggac 8982561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 496
Target Start/End: Complemental strand, 10601819 - 10601762
Alignment:
Q  439 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacg 496  Q
    |||||| || |||||| |||||||||||||||||| || ||||| |||||| ||||||    
T  10601819 tgaatcccgaatcttgcatatattatgcattgtccataccaactgaattaagctcacg 10601762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 451 - 504
Target Start/End: Complemental strand, 14303209 - 14303156
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 504  Q
    |||||||||||||| |||||||| || ||||| |  ||||||||||||||||||    
T  14303209 cttgtatatattatacattgtccataccaactgagctaaactcacgaggacaaa 14303156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 456 - 501
Target Start/End: Original strand, 32223901 - 32223946
Alignment:
Q  456 atatattatgcattgtccctatcaactaaattaaactcacgaggac 501  Q
    ||||||||||||||||| ||||||||| || ||| |||||||||||    
T  32223901 atatattatgcattgtctctatcaactgaactaagctcacgaggac 32223946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 451 - 504
Target Start/End: Complemental strand, 33620942 - 33620889
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 504  Q
    ||||||||||||||||||||||| ||  |||| | |||||||||||| ||||||    
T  33620942 cttgtatatattatgcattgtccatactaactgagttaaactcacgaagacaaa 33620889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 439 - 482
Target Start/End: Complemental strand, 2692271 - 2692228
Alignment:
Q  439 tgaatctcggatcttgtatatattatgcattgtccctatcaact 482  Q
    |||||||||||||||| |||||||||||||||||| ||||||||    
T  2692271 tgaatctcggatcttgcatatattatgcattgtccatatcaact 2692228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 457 - 501
Target Start/End: Complemental strand, 7927738 - 7927694
Alignment:
Q  457 tatattatgcattgtccctatcaactaaattaaactcacgaggac 501  Q
    |||||||||||||||||||||||||| || ||| |||||||||||    
T  7927738 tatattatgcattgtccctatcaactgaactaagctcacgaggac 7927694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 28478663 - 28478711
Alignment:
Q  315 ttttaatatgttgaatgcataatttttaagataaagttgctactttaag 363  Q
    |||||||||||||||| || ||||| |||||||||||| ||||||||||    
T  28478663 ttttaatatgttgaatacacaatttctaagataaagtttctactttaag 28478711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 29791118 - 29791166
Alignment:
Q  315 ttttaatatgttgaatgcataatttttaagataaagttgctactttaag 363  Q
    |||||||||||||||| || ||||| |||||||||||| ||||||||||    
T  29791118 ttttaatatgttgaatacacaatttctaagataaagtttctactttaag 29791166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 451 - 502
Target Start/End: Complemental strand, 12412321 - 12412270
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 502  Q
    |||| ||||||||||||||||| ||| ||||||| |||| ||||||||||||    
T  12412321 cttgcatatattatgcattgtctctaccaactaagttaagctcacgaggaca 12412270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 439 - 501
Target Start/End: Complemental strand, 8809362 - 8809300
Alignment:
Q  439 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 501  Q
    |||| ||||||||||| ||||||||||||||||   |||||| | || |||||||||||||||    
T  8809362 tgaacctcggatcttgcatatattatgcattgtttttatcaattgaactaaactcacgaggac 8809300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 455 - 501
Target Start/End: Original strand, 12336347 - 12336393
Alignment:
Q  455 tatatattatgcattgtccctatcaactaaattaaactcacgaggac 501  Q
    ||||||||||||||||||| ||| |||| | ||||||||||||||||    
T  12336347 tatatattatgcattgtccatattaactgagttaaactcacgaggac 12336393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 459 - 501
Target Start/End: Complemental strand, 21885023 - 21884981
Alignment:
Q  459 tattatgcattgtccctatcaactaaattaaactcacgaggac 501  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||    
T  21885023 tattatgcattgtccctatcaattaagttaaacttacgaggac 21884981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 449 - 502
Target Start/End: Complemental strand, 2445345 - 2445292
Alignment:
Q  449 atcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 502  Q
    ||||||||||||||||||||||| | |||||||| | |||| || |||||||||    
T  2445345 atcttgtatatattatgcattgttcatatcaactgagttaagcttacgaggaca 2445292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 449 - 502
Target Start/End: Original strand, 3373396 - 3373449
Alignment:
Q  449 atcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 502  Q
    |||||| |||||||||||||||||| |||||||| | ||||| |||||| ||||    
T  3373396 atcttgcatatattatgcattgtccatatcaactgagttaaattcacgaagaca 3373449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 504
Target Start/End: Complemental strand, 31971585 - 31971520
Alignment:
Q  439 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 504  Q
    |||| |||||| |||| |||||||||||||||||| || ||||| | |||| || |||||||||||    
T  31971585 tgaacctcggaccttgcatatattatgcattgtccttaccaactgagttaagcttacgaggacaaa 31971520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 451 - 502
Target Start/End: Complemental strand, 40446027 - 40445976
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 502  Q
    |||| |||||||||||||||||| |||||||| | |||||||||||||||||    
T  40446027 cttgcatatattatgcattgtccttatcaactgagttaaactcacgaggaca 40445976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 439 - 504
Target Start/End: Original strand, 1082224 - 1082289
Alignment:
Q  439 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 504  Q
    ||||||||||| |||||||||||||| ||||||||||| ||||| || ||| |||| |||| ||||    
T  1082224 tgaatctcggaccttgtatatattatacattgtccctaccaactgaactaagctcatgagggcaaa 1082289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 446 - 506
Target Start/End: Original strand, 8545001 - 8545061
Alignment:
Q  446 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaaga 506  Q
    |||| |||| |||||||||||||||||| |||||||| | |||| |||||||| |||||||    
T  8545001 cggaccttgcatatattatgcattgtccttatcaactgagttaagctcacgagaacaaaga 8545061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 456 - 504
Target Start/End: Complemental strand, 10531579 - 10531531
Alignment:
Q  456 atatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 504  Q
    |||||||||||||||||| || |||||||| ||| ||||||||||||||    
T  10531579 atatattatgcattgtccatagcaactaaactaagctcacgaggacaaa 10531531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 444 - 498
Target Start/End: Complemental strand, 17046385 - 17046331
Alignment:
Q  444 ctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgag 498  Q
    ||||||||||| |||||||||||||||||| || ||||| | |||| ||||||||    
T  17046385 ctcggatcttgcatatattatgcattgtccataccaactgagttaagctcacgag 17046331  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 456 - 502
Target Start/End: Complemental strand, 28447532 - 28447486
Alignment:
Q  456 atatattatgcattgtccctatcaactaaattaaactcacgaggaca 502  Q
    |||||||||||||||||||||  |||| | |||||||||||||||||    
T  28447532 atatattatgcattgtccctactaactgagttaaactcacgaggaca 28447486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 451 - 509
Target Start/End: Complemental strand, 34436895 - 34436837
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaagacat 509  Q
    |||| ||||||||||||||||||||| ||||| |  ||| |||||||||||| ||||||    
T  34436895 cttgcatatattatgcattgtccctaccaactgagctaagctcacgaggacagagacat 34436837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 456 - 501
Target Start/End: Complemental strand, 4432155 - 4432110
Alignment:
Q  456 atatattatgcattgtccctatcaactaaattaaactcacgaggac 501  Q
    |||||||||||||||||| |||||||| | ||||||| ||||||||    
T  4432155 atatattatgcattgtccttatcaactgagttaaacttacgaggac 4432110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 451 - 484
Target Start/End: Original strand, 7861018 - 7861051
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaa 484  Q
    |||| |||||||||||||||||||||||||||||    
T  7861018 cttgcatatattatgcattgtccctatcaactaa 7861051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 504
Target Start/End: Original strand, 8885246 - 8885311
Alignment:
Q  439 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 504  Q
    ||||||||| | |||| |||| |||||||||||||| ||||| | | ||| |||||||||||||||    
T  8885246 tgaatctcgtaccttgcatattttatgcattgtcccaatcaaatgagttatactcacgaggacaaa 8885311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 501
Target Start/End: Original strand, 42663222 - 42663271
Alignment:
Q  452 ttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 501  Q
    |||||||||||||| ||||| |||| ||||| | ||||||||||||||||    
T  42663222 ttgtatatattatgtattgttcctaacaactgagttaaactcacgaggac 42663271  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 456 - 503
Target Start/End: Complemental strand, 7827547 - 7827500
Alignment:
Q  456 atatattatgcattgtccctatcaactaaattaaactcacgaggacaa 503  Q
    |||||||||||||||||| |||||||| | ||||||||||||||||||    
T  7827547 atatattatgcattgtccatatcaactgagttaaactcacgaggacaa 7827500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 456 - 503
Target Start/End: Complemental strand, 7829935 - 7829888
Alignment:
Q  456 atatattatgcattgtccctatcaactaaattaaactcacgaggacaa 503  Q
    |||||||||||||||||| |||||||| | ||||||||||||||||||    
T  7829935 atatattatgcattgtccatatcaactgagttaaactcacgaggacaa 7829888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 451 - 502
Target Start/End: Complemental strand, 32753872 - 32753821
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 502  Q
    |||||||||||||||||||||||||||||||| | | || ||||||||||||    
T  32753872 cttgtatatattatgcattgtccctatcaactgagtcaagctcacgaggaca 32753821  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 452 - 507
Target Start/End: Original strand, 48924337 - 48924392
Alignment:
Q  452 ttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaagac 507  Q
    ||||||||||||| ||||||||||| |||||||  |||||||||||||||| ||||    
T  48924337 ttgtatatattatacattgtccctaccaactaagctaaactcacgaggacagagac 48924392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 451 - 497
Target Start/End: Complemental strand, 48517715 - 48517669
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacga 497  Q
    ||||||||||||||||||||| |||||||||| | ||||||||||||    
T  48517715 cttgtatatattatgcattgttcctatcaactgagttaaactcacga 48517669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 451 - 496
Target Start/End: Original strand, 12976619 - 12976664
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacg 496  Q
    |||| ||||||||||||||||||||||||||| | |||||||||||    
T  12976619 cttgcatatattatgcattgtccctatcaactgagttaaactcacg 12976664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 451 - 503
Target Start/End: Complemental strand, 28093398 - 28093346
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 503  Q
    |||| |||||||||||||||||| || ||||| ||||||||||||| ||||||    
T  28093398 cttgcatatattatgcattgtccataccaactgaattaaactcacggggacaa 28093346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 446 - 504
Target Start/End: Complemental strand, 7738718 - 7738660
Alignment:
Q  446 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 504  Q
    |||| |||| |||| |||||||||||||||| ||||| | |||| ||||||||||||||    
T  7738718 cggaccttgcatattttatgcattgtccctaccaactgagttaagctcacgaggacaaa 7738660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 446 - 496
Target Start/End: Original strand, 10922320 - 10922370
Alignment:
Q  446 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacg 496  Q
    ||||||||| ||||||||||||||||||||| ||||| | |||| ||||||    
T  10922320 cggatcttgcatatattatgcattgtccctaccaactgagttaagctcacg 10922370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 444 - 494
Target Start/End: Original strand, 39869817 - 39869867
Alignment:
Q  444 ctcggatcttgtatatattatgcattgtccctatcaactaaattaaactca 494  Q
    |||||| ||||||||||||||||||||||| || ||||| | |||||||||    
T  39869817 ctcggaccttgtatatattatgcattgtccttaccaactgagttaaactca 39869867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 446 - 500
Target Start/End: Original strand, 46226089 - 46226143
Alignment:
Q  446 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgagga 500  Q
    |||| |||| ||||||||||||||||||||| ||| | | |||||||||||||||    
T  46226089 cggaccttgcatatattatgcattgtccctaccaattgagttaaactcacgagga 46226143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 456 - 501
Target Start/End: Original strand, 7464513 - 7464558
Alignment:
Q  456 atatattatgcattgtccctatcaactaaattaaactcacgaggac 501  Q
    ||||||||||||||||||||| ||||| | |||| |||||||||||    
T  7464513 atatattatgcattgtccctaccaactgagttaagctcacgaggac 7464558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 451 - 500
Target Start/End: Complemental strand, 8139759 - 8139710
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgagga 500  Q
    |||| |||||||||||||||||| || |||||||| ||| ||||||||||    
T  8139759 cttgcatatattatgcattgtccataccaactaaactaagctcacgagga 8139710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 504
Target Start/End: Complemental strand, 9598495 - 9598430
Alignment:
Q  439 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 504  Q
    ||||||||||| |||| |||| |||| ||||||||| | ||||| || ||| ||||||||||||||    
T  9598495 tgaatctcggaccttgcatattttatacattgtcccaaccaactgaactaagctcacgaggacaaa 9598430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 456 - 505
Target Start/End: Complemental strand, 22462351 - 22462302
Alignment:
Q  456 atatattatgcattgtccctatcaactaaattaaactcacgaggacaaag 505  Q
    |||||||||||||||||| |||||||| | |||| |||||| ||||||||    
T  22462351 atatattatgcattgtccttatcaactgagttaagctcacggggacaaag 22462302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 456 - 505
Target Start/End: Complemental strand, 23332689 - 23332640
Alignment:
Q  456 atatattatgcattgtccctatcaactaaattaaactcacgaggacaaag 505  Q
    |||||||||||||||| | |||||||||| ||||  ||||||||||||||    
T  23332689 atatattatgcattgttcatatcaactaagttaagttcacgaggacaaag 23332640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 451 - 504
Target Start/End: Original strand, 28052399 - 28052452
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 504  Q
    |||| ||| ||||||| ||||||||||||||| || ||||||||| ||||||||    
T  28052399 cttggataaattatgcgttgtccctatcaactgaactaaactcacaaggacaaa 28052452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 31110669 - 31110632
Alignment:
Q  315 ttttaatatgttgaatgcataatttttaagataaagtt 352  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  31110669 ttttaatatctcgaatgcataatttttaagataaagtt 31110632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 448 - 501
Target Start/End: Complemental strand, 38388019 - 38387966
Alignment:
Q  448 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 501  Q
    ||||||| ||||||||||||||||| ||||||||| |  ||| |||||||||||    
T  38388019 gatcttgcatatattatgcattgtcactatcaactgagctaagctcacgaggac 38387966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 502
Target Start/End: Complemental strand, 22967 - 22904
Alignment:
Q  439 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 502  Q
    |||| |||||| |||| |||| ||||||||||| | ||||||||||| ||| ||||||||||||    
T  22967 tgaacctcggaccttgcatattttatgcattgttcatatcaactaaactaagctcacgaggaca 22904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 451 - 498
Target Start/End: Complemental strand, 4510 - 4463
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgag 498  Q
    |||| ||| |||||||||||||||||||||||||  ||||||||||||    
T  4510 cttgcataaattatgcattgtccctatcaactaagctaaactcacgag 4463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 451 - 501
Target Start/End: Complemental strand, 99081 - 99031
Alignment:
Q  451 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 501  Q
    |||| ||||||||||||||||||||||||||| | | || |||||||||||    
T  99081 cttgcatatattatgcattgtccctatcaactgagtcaagctcacgaggac 99031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 501
Target Start/End: Complemental strand, 63905 - 63856
Alignment:
Q  452 ttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 501  Q
    ||||||||||||| ||||||||||| ||||| |  |||||||||||||||    
T  63905 ttgtatatattatacattgtccctaccaactgagctaaactcacgaggac 63856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 501
Target Start/End: Complemental strand, 71237 - 71188
Alignment:
Q  452 ttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 501  Q
    ||||||||||||| ||||||||||| ||||| |  |||||||||||||||    
T  71237 ttgtatatattatacattgtccctaccaactgagctaaactcacgaggac 71188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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