View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6264_high_26 (Length: 314)

Name: NF6264_high_26
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6264_high_26
NF6264_high_26
[»] chr3 (1 HSPs)
chr3 (20-313)||(43779908-43780201)


Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 313
Target Start/End: Complemental strand, 43780201 - 43779908
Alignment:
Q  20 aatattattgagaacatagcataaaaaattaaaagaaatattcaaaggggaaactccacagaaacacagttaaagatctcacgtccaaaccggatcactt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43780201 aatattattgagaacatagcataaaaaattaaaagaaatattcaaagggaaaactccacagaaacacagttaaagatctcacgtccaaaccggatcactt 43780102  T
Q  120 agtggctgagcacggctatttttgtcaaactctggatactgcagtaacggaggcattatgacttcagactctgtatatatctcacattccattgcctgca 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43780101 agtggctgagcacggctatttttgtcaaactctggatactgcagtaacggaggcattatgacttcagactctgtatatatctcacattccattgcctgca 43780002  T
Q  220 tgtcagatgacatattcgaaggatctttaggtgattcaggctgctttnnnnnnncattttcgttctcaaggaatggcaatatattctcagtgtt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||        ||||||| |||||||||| ||||| |||  ||||||||||    
T  43780001 tgtcagatgacatattcgaaggatctttaggtgattcaggctgcttgcaaaaaacattttcattctcaaggattggcagtatcatctcagtgtt 43779908  T

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