View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6264_high_28 (Length: 309)
Name: NF6264_high_28
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6264_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 297
Target Start/End: Original strand, 22573750 - 22574031
Alignment:
| Q |
16 |
gtttcatcaacacaatgttttaccagcacaccaccttgttctttgatcttcccattcttatccacattgcggcgaagtttgatccttctcctgacacggt |
115 |
Q |
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| T |
22573750 |
gtttcatcaacacaatgttttaccagcacaccaccttgttctttgatcttcccattcttatccacattgcggcgaagtttgatccttctcctgacacggt |
22573849 |
T |
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| Q |
116 |
gattcccatcaaggttgttaggtgatcgctctgacatgtccaacattgcttcagcaacatcagcttcaacgtcattaacataattccagctccgtttctt |
215 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22573850 |
gattcccatcaaggctgttaggtgatcgctctgacatgtccaacattgcttcagcaacatcagcttcaacgtcattaacataattccagctccgtttctt |
22573949 |
T |
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| Q |
216 |
ggtcacatacctcatcggtggcaaatactttctcaaatcaattggtggaaattgatcttgatcataattcttactacccttc |
297 |
Q |
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| T |
22573950 |
ggtcacatacctcatcggtggcaaatactttctcaaatcaattggtggaaattgatcttgatcataattcttactacccttc |
22574031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 297
Target Start/End: Original strand, 22564222 - 22564480
Alignment:
| Q |
42 |
cacaccaccttgttctttgatcttcccattcttatccacattgcggcgaagtttgatccttctcctgacacggtgattcccatcaaggttgttaggtgat |
141 |
Q |
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||||||||||||||| ||||||||| ||| | ||| ||| ||| || |||||| || ||| | || ||||||||||| ||| ||| ||| || |||| |
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| T |
22564222 |
cacaccaccttgttcattgatcttctcatcatcatcgacactgctgcaaagtttcattcttttattgtcacggtgattcacattaagattggcagatgat |
22564321 |
T |
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| Q |
142 |
cgctctgacatgtccaacattgcttcagcaacat---cagcttcaacgtcattaacataattccagctccgtttcttggtcacatacctcatcggtggca |
238 |
Q |
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||| ||||| |||| |||| ||||||||| | ||| |||||| ||| || ||||| ||||||||||||||||||| | ||||| || ||||||| |
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| T |
22564322 |
tgctgagacatatccaccattatttcagcaacgttaacagtttcaacatcaagaaaataatcccagctccgtttcttggtctcgtaccttattggtggca |
22564421 |
T |
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| Q |
239 |
aatactttctcaaatcaattggtggaaattgatcttgatcataattcttactacccttc |
297 |
Q |
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|||||||| | |||||||| |||||||| |||||| | || |||| |||||||||||| |
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| T |
22564422 |
aatactttgttaaatcaatgggtggaaactgatctaggtcgcaattgttactacccttc |
22564480 |
T |
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