View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6264_high_4 (Length: 632)
Name: NF6264_high_4
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6264_high_4 |
 | |
|
| [»] scaffold0627 (3 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 595; Significance: 0; HSPs: 26)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 11 - 613
Target Start/End: Complemental strand, 8529672 - 8529070
Alignment:
| Q |
11 |
cagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8529672 |
cagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccaatagtgatctgcaacccagtc |
8529573 |
T |
|
| Q |
111 |
acgggggagttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529572 |
acgggggagttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaat |
8529473 |
T |
|
| Q |
211 |
ataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529472 |
ataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctg |
8529373 |
T |
|
| Q |
311 |
gagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatggtgcacttcattggataagatttgagggtcagcaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529372 |
gagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatggtgcacttcattggataagatttgagggtcagcaa |
8529273 |
T |
|
| Q |
411 |
aggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataatgttttttgttgtaggccta |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529272 |
aggtcaatattggttttctgctttgaaaatgagaggttgcagtcgtttccttctcctccacatgtgtttggaaatcataatgttttttgttgtaggccta |
8529173 |
T |
|
| Q |
511 |
ttagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaatc |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529172 |
ttagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaatc |
8529073 |
T |
|
| Q |
611 |
atg |
613 |
Q |
| |
|
||| |
|
|
| T |
8529072 |
atg |
8529070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 12 - 613
Target Start/End: Complemental strand, 8536235 - 8535628
Alignment:
| Q |
12 |
agagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtca |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8536235 |
agagattttgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtca |
8536136 |
T |
|
| Q |
112 |
cgggggagttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaata |
211 |
Q |
| |
|
| |||||||| ||||||||||||||||||| | | ||| || ||| ||||||| || ||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8536135 |
ctggggagtttataagacttcctgaatctattgcggatcaaaatcgggtaagaaggctaggacaagctggttttggtttccaacctaaaactaatgaata |
8536036 |
T |
|
| Q |
212 |
taaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctgg |
311 |
Q |
| |
|
|||||| |||| | ||||| | ||||||||||||| ||||||| ||||| |||||||||| ||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
8536035 |
taaggtgataaacatgtgggtgagacatgttaaacgtgccaatgtgtgggagtttgagcgtttgacccttgagataaacacacttggaaccccatcctgg |
8535936 |
T |
|
| Q |
312 |
agaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatggtgcacttcattggataagatttgagggtcagcaaa |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||| ||||| |
|
|
| T |
8535935 |
agaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatggtgcactacattggctaagatttgatggtctgcaaa |
8535836 |
T |
|
| Q |
412 |
ggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataat------gttttttgttgtag |
505 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||| | || |||||||||||||||||||||| ||||||||||||||||| || || || ||| |
|
|
| T |
8535835 |
ggtcaatattgattttctgctttgaaagtgagacgctgaagtcatttccttctcctccacagatgtttggaaatcataataatggatttcttagtaatag |
8535736 |
T |
|
| Q |
506 |
gcctattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattgga |
605 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8535735 |
acatattagcatgggagaattaaagggatttctttacatttgtgattcgacctttttatctgatgtttcaatgtgggttatgaatgaatatggcattgga |
8535636 |
T |
|
| Q |
606 |
gaatcatg |
613 |
Q |
| |
|
|||||||| |
|
|
| T |
8535635 |
gaatcatg |
8535628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 613
Target Start/End: Original strand, 1599679 - 1600277
Alignment:
| Q |
19 |
ttgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacggggga |
118 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
1599679 |
ttgataagtttaatattgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtgatctgcaacccaatcactgggga |
1599778 |
T |
|
| Q |
119 |
gttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaatataaggta |
218 |
Q |
| |
|
|||||||||||||||||||||||| | |||| |||||| ||| ||| |||||| | ||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1599779 |
gttcataagacttcctgaatctaccgcgaatcaaactcgggtaggaaggcaaggacgagctgcttttggtttccaacctaaaactaatgaatataaggtg |
1599878 |
T |
|
| Q |
219 |
ataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctggagaaatg |
318 |
Q |
| |
|
|||| | || || | ||| ||||||||| ||||||| || || |||| || ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1599879 |
ataaacatgagggtgagatatgttaaacgtgccaatgcgttggagtttaagattgtgatccttgagataaacacacttggaacaccatcctggagaaatg |
1599978 |
T |
|
| Q |
319 |
ttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatggtgcacttcattggataagatttgagggtcagcaaaggtcaat |
418 |
Q |
| |
|
||||||||||||||||||||||||||| || || ||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||| |
|
|
| T |
1599979 |
ttgaagtggatcctcaaatttctttttggatgcttaagaatcccacttgtgtgaatggtgcacttcattggataagatatgagggtgagcaaatgtcaat |
1600078 |
T |
|
| Q |
419 |
attggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatc---ataatgttttttgttgt---aggcctatt |
512 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||| || || | | || |
|
|
| T |
1600079 |
attggttttctgttttgaaagtgagaggttgcagtcatttccttctcctccacatgagtttggaaatcataataatggaacttgtggtaacagccatgtt |
1600178 |
T |
|
| Q |
513 |
agcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaatcat |
612 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| | |||||| ||||| ||||| |||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
1600179 |
agcatgggagaattaaagggatttctttacatttgtga--ctacctttttatctgatgttccaatgtgggttatgaaggaatatggcattgaagaatcat |
1600276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 20 - 613
Target Start/End: Original strand, 9074118 - 9074702
Alignment:
| Q |
20 |
tgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||| | ||||||||||||||||||||| |||||| |
|
|
| T |
9074118 |
tgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgaaccaactaccggaaacccttcagtgatctgcaacccagtcacaggggag |
9074217 |
T |
|
| Q |
120 |
ttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaatataaggtaa |
219 |
Q |
| |
|
|||||||||||||||||| |||| || ||||||||||| ||||||||| ||| |||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9074218 |
ttcataagacttcctgaagctaccacgaatcgaactcgggtaagaatggtaggacaagttggttttggattccaacctaatactaatgaatataaggtaa |
9074317 |
T |
|
| Q |
220 |
taagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctggagaaatgt |
319 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||||||| || |||||||||||| ||||||||||||||||||||||| | ||||||||| |
|
|
| T |
9074318 |
taagaatgtggataagacatggtaaacgtgccaat------------gaccgtgtgatccttcagataaacacacttggaacaacaatattgagaaatgt |
9074405 |
T |
|
| Q |
320 |
tgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatggtgcacttcattggataagatttgagggtcagcaaaggtcaata |
419 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
9074406 |
tgaagtggatcctcaaatttcttttttgagtctcgagtatcccacttgtgtgaatggtgcacttcattggataagatatgaaaatcagcaaaggtcaata |
9074505 |
T |
|
| Q |
420 |
ttggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataatgtt--ttttgttg-taggcctattagca |
516 |
Q |
| |
|
||| ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||| | |||||| || || || |
|
|
| T |
9074506 |
ttgtttttctgttttgaaagtgagaggttgcagtcatttccttctcctccgcatgtgtttggaaaccataatagtggaattgttgataacagacatatca |
9074605 |
T |
|
| Q |
517 |
tgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaatcatg |
613 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||| ||| ||||| |||||||| |||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
9074606 |
tgggagaattaaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatg |
9074702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 260 - 613
Target Start/End: Complemental strand, 8641866 - 8641498
Alignment:
| Q |
260 |
ggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtat |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||| |||||| |||||||||| |||||| |
|
|
| T |
8641866 |
ggtgtttgagcgtgtgatccttgagataaacacacttggagcaccatcatggagaaatgttgaagtggatcctcagatttctatttcgagtcttaagtat |
8641767 |
T |
|
| Q |
360 |
cccacttgtgtgaatggtgcacttcattggataagatttgagggtcagcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttc |
459 |
Q |
| |
|
||||||||||||||| ||| |||||||| || | ||||||||| |||||||||||||||| |||||| || |||| |||||| ||| ||| ||||| |
|
|
| T |
8641766 |
cccacttgtgtgaatagtgttcttcattgaatcaaatttgagggggagcaaaggtcaatattatgtttctgtttggaaagtgagagattgaagttatttc |
8641667 |
T |
|
| Q |
460 |
cttctcctccacatgtgtttggaaatcataat---------gttttttgttgtaggcctattagcatgggagaattaaagggatttctatacatttgtga |
550 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | || |||| ||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
8641666 |
cttctcctccacatgtgtttggaaatcataataataatggaattcatggtaacaggcttattagcatgggagagttaaagggatttccttacatttgtga |
8641567 |
T |
|
| Q |
551 |
tc------cgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaatcatg |
613 |
Q |
| |
|
|| |||||||| | | | |||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8641566 |
tcgtgactcgacctttttctttgatgtcacagtgtgggttatgaatgaatatggcattggagaatcatg |
8641498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 24 - 613
Target Start/End: Original strand, 2856268 - 2856869
Alignment:
| Q |
24 |
aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca |
123 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||| ||||| ||||| | |||| ||| |||||||| ||||||||||| ||| |||| || | |
|
|
| T |
2856268 |
aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaacccagtaacgagggaattta |
2856367 |
T |
|
| Q |
124 |
taagacttcctgaatctactacaaat-cgaactcgagtaagaatgcaaggt--caagctggttttggattccaacctaaaactaatgaatataaggtaat |
220 |
Q |
| |
|
|| |||||||||| |||||| | | | ||| | ||| | ||| || |||||||||||||| |||||||| |||||||||||||||||||| || |
|
|
| T |
2856368 |
caatacttcctgaacttactacgacttctgactggtttaacagtgctcgggtacaagctggttttggtttccaacccaaaactaatgaatataaggtgat |
2856467 |
T |
|
| Q |
221 |
aagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctggagaaatgtt |
320 |
Q |
| |
|
| |||||| | | |||||| || | ||||| | ||||||||||||||| | || |||||| |||| || |||||| |||| |||||||||||| |
|
|
| T |
2856468 |
cataatgtggaacaaatatgttagacgagacaatcgtttggtgtttgagcgtgtagtgctcgagatacacacgctcggaacatcatcatggagaaatgtt |
2856567 |
T |
|
| Q |
321 |
gaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatggtgcacttcattggataagatttgagg---gtcagcaaaggtcaa |
417 |
Q |
| |
|
||||||||||||||||||||||||| || || | |||| || ||||||||||| |||||||||||||| | |||||| | | || |||| ||||| |
|
|
| T |
2856568 |
gaagtggatcctcaaatttcttttttgaagcttttgaatccaacatgtgtgaatggcgcacttcattggattatatttgaagcttggcaacaaaagtcaa |
2856667 |
T |
|
| Q |
418 |
tattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatc---ataatgttttt---tgttgtaggcctat |
511 |
Q |
| |
|
||||| |||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||| | | | |||||| |
|
|
| T |
2856668 |
tattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctcctccacatgtgtttggaaatcatgataatggatttccccatagcatgcctat |
2856767 |
T |
|
| Q |
512 |
tagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaatca |
611 |
Q |
| |
|
||| |||||||||| ||||||||||| ||||||||| || | | | | |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2856768 |
tagattgggagaattgaagggatttctttacatttgtcatagatcgtctctcgagaatgttacaatgtgggttatgaatgaatatggcattggagaatca |
2856867 |
T |
|
| Q |
612 |
tg |
613 |
Q |
| |
|
|| |
|
|
| T |
2856868 |
tg |
2856869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 24 - 613
Target Start/End: Original strand, 2873878 - 2874479
Alignment:
| Q |
24 |
aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca |
123 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||| ||||| ||||| | |||| ||| |||||||| ||||||||||| ||| |||| |||| |
|
|
| T |
2873878 |
aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaacccagtaacgagggaattca |
2873977 |
T |
|
| Q |
124 |
taagacttcctgaatctactacaaat-cgaactcgagtaagaatgcaaggt--caagctggttttggattccaacctaaaactaatgaatataaggtaat |
220 |
Q |
| |
|
|| |||||||||| |||||| | | | ||| | ||| | ||| || |||||||||||| | |||||||| |||||||||||||||||||| || |
|
|
| T |
2873978 |
caatacttcctgaacttactacgacttctgactggtttaacagtgctcgggtacaagctggttttagtttccaacccaaaactaatgaatataaggtgat |
2874077 |
T |
|
| Q |
221 |
aagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctggagaaatgtt |
320 |
Q |
| |
|
| | |||| | | |||||| || | ||||| | ||||||||||||||| | || |||||| |||| || |||||| |||| |||||||||||| |
|
|
| T |
2874078 |
cataatatggaacaaatatgttagacgagacaatcgtttggtgtttgagcgtgtagtgctcgagatacacacgctcggaacaccatcatggagaaatgtt |
2874177 |
T |
|
| Q |
321 |
gaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatggtgcacttcattggataagatttgagg---gtcagcaaaggtcaa |
417 |
Q |
| |
|
||||||||||||||||||||||||| || || | |||| || ||||||||||| |||||||||||||| | |||||| | | || |||| ||||| |
|
|
| T |
2874178 |
gaagtggatcctcaaatttcttttttgaagcttttgaatccaacatgtgtgaatggcgcacttcattggattatatttgaagcttggcaacaaaagtcaa |
2874277 |
T |
|
| Q |
418 |
tattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatc---ataatgttttt---tgttgtaggcctat |
511 |
Q |
| |
|
||||| |||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||| | | | |||||| |
|
|
| T |
2874278 |
tattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctcctccacatgtgtttggaaatcatgataatggatttccccatagcatgcctat |
2874377 |
T |
|
| Q |
512 |
tagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaatca |
611 |
Q |
| |
|
||| |||||||||| ||||||||||| ||||||||| || | | | | |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2874378 |
tagattgggagaattgaagggatttctttacatttgtcatagatcgtctctcgagaatgttacaatgtgggttatgaatgaatatggcattggagaatca |
2874477 |
T |
|
| Q |
612 |
tg |
613 |
Q |
| |
|
|| |
|
|
| T |
2874478 |
tg |
2874479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 174 - 613
Target Start/End: Original strand, 2844594 - 2845042
Alignment:
| Q |
174 |
caagctggttttggattccaacctaaaactaatgaatataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtg |
273 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||| || | |||||| | | |||||| || ||||| | |||||||||||||| |
|
|
| T |
2844594 |
caagctggttttggtttccaacccaaaactaatgaatataaggtgatcataatgtggaacaaatatgttagacgaaacaatcgtttggtgtttgagcgtg |
2844693 |
T |
|
| Q |
274 |
tgatccttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaa |
373 |
Q |
| |
|
| | || |||||| |||| ||||||||| |||| |||||||| |||||||||||||||||||||||||||| || || | |||| || |||||||| |
|
|
| T |
2844694 |
tagtgctcgagatacacacgcttggaacaccatcatggagaaaggttgaagtggatcctcaaatttcttttttgaagcttttgaatccaacatgtgtgaa |
2844793 |
T |
|
| Q |
374 |
tggtgcacttcattggataagatttga---gggtcagcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctcca |
470 |
Q |
| |
|
||| |||||||||||||| | |||||| ||| || |||| |||||||||| |||| ||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
2844794 |
tggcgcacttcattggattatatttgaaacggggcaacaaaagtcaatattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctcctcca |
2844893 |
T |
|
| Q |
471 |
catgtgtttggaaatc---ataatgttttt---tgttgtaggcctattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatat |
564 |
Q |
| |
|
|||||||||||||||| |||||| ||| | | | ||||||||| |||||||||| ||||||||||| ||||||||| || | | | | |
|
|
| T |
2844894 |
catgtgtttggaaatcatgataatggatttccccttagcatgcctattagattgggagaattgaagggatttctttacatttgtcatatatcgtctcttg |
2844993 |
T |
|
| Q |
565 |
ctaatgtttcaatgtgggttatgaatgaatatggcattggagaatcatg |
613 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2844994 |
agaatgttacaatgtgggttatgaatgaatatggcattggagaatcatg |
2845042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 179 - 475
Target Start/End: Complemental strand, 9004028 - 9003734
Alignment:
| Q |
179 |
tggttttggattccaacctaaaactaatgaatataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatc |
278 |
Q |
| |
|
||||||||| | ||||||||||||||||| |||||||| |||| | |||| |||||||||| | || |||| | | ||||||||||||| |||| |
|
|
| T |
9004028 |
tggttttggttatcaacctaaaactaatgattataaggtgataaaaatatggacgagacatgttagaggtgacaataactttgtgtttgagcgtgcgatc |
9003929 |
T |
|
| Q |
279 |
cttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatggtg |
378 |
Q |
| |
|
||||||||| |||||| |||||| |||| ||||||||||||||||||||||||||| | ||| ||| |||||| || ||||| |||||||||||||| | |
|
|
| T |
9003928 |
cttgagata--cacactgggaacaccatcatggagaaatgttgaagtggatcctcaactgtctatttggagtcttaattatccgacttgtgtgaatggcg |
9003831 |
T |
|
| Q |
379 |
cacttcattggataagatttgagggtcagcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgt |
475 |
Q |
| |
|
||||||||||||| |||||||| || ||||| |||||||||| |||| || |||||||||||||| || || |||||||| ||||||||||| |
|
|
| T |
9003830 |
cacttcattggatcagatttgattttctgcaaatgtcaatattgtgtttcaatttggaaaatgagaggttccaatcttttccttcccctccacatgt |
9003734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 165 - 470
Target Start/End: Complemental strand, 8637454 - 8637140
Alignment:
| Q |
165 |
atgcaaggtcaagctggttttggattccaacctaaaactaatgaatataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgt |
264 |
Q |
| |
|
|||| ||| |||| ||||||||| ||||||||||||||||||||||||||||| ||||| | ||| || ||||||||| | ||||| ||||||| |
|
|
| T |
8637454 |
atgcgaggacaagttggttttggtttccaacctaaaactaatgaatataaggtgataagaatatggggcagtgatgttaaacgaggcaatcgttgggtgt |
8637355 |
T |
|
| Q |
265 |
ttgagcgtgtgatccttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttctttt---tcgagtctaaag----- |
356 |
Q |
| |
|
|||| ||| || ||||||||||| | |||||||||||| |||| |||||||||| |||||||||||| ||||||||| || || | | || | |
|
|
| T |
8637354 |
ttgatcgtatggtccttgagatatatacacttggaacaccatcatggagaaatgctgaagtggatccccaaatttctattggatcaaatatatggcttcg |
8637255 |
T |
|
| Q |
357 |
-tatcccacttgtgtgaatggtgcacttcattggataagatttgagggtcagcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtca |
455 |
Q |
| |
|
||||||||||||||||||||| | |||||||||| |||||| ||||||| ||||||| |||||| |||||| || ||||||||||||||||| ||| |
|
|
| T |
8637254 |
ttatcccacttgtgtgaatggtacgattcattggatcagatttaagggtcaagaaaggtctatattgtgtttctgtttagaaaatgagaggttgcaatca |
8637155 |
T |
|
| Q |
456 |
tttccttctcctcca |
470 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8637154 |
tttccttctcctcca |
8637140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 24 - 482
Target Start/End: Original strand, 2904384 - 2904848
Alignment:
| Q |
24 |
aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca |
123 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||| ||||| ||||| |||| ||| |||| ||| ||||||||||| ||| |||| |||| |
|
|
| T |
2904384 |
aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctaccggaagccctttagcgatttgcaacccagtaacgagggaattca |
2904483 |
T |
|
| Q |
124 |
taagacttcctgaatctactacaaat-cgaactcgagtaagaatgcaaggt--caagctggttttggattccaacctaaaactaatgaatataaggtaat |
220 |
Q |
| |
|
|| |||||||||| |||||| | | | ||| | ||| | ||| || |||||||||||||| |||||||| |||||||||||||||||||| || |
|
|
| T |
2904484 |
caatacttcctgaacttactacgacttctgactggtttaacagtgctcgggtgcaagctggttttggtttccaacccaaaactaatgaatataaggtgat |
2904583 |
T |
|
| Q |
221 |
aagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctggagaaatgtt |
320 |
Q |
| |
|
|| |||||| | |||||||| || ||||| | | |||||| |||||| | | ||||||||| |||| || ||||||||||| ||||||||| || |
|
|
| T |
2904584 |
aataatgtggaataaacatgttagacgggccaacgatttggtgttcgagcgtctagtgcttgagatacacacgctcggaacaacatcatggagaaatctt |
2904683 |
T |
|
| Q |
321 |
gaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatggtgcacttcattggataagattt---gagggtcagcaaaggtcaa |
417 |
Q |
| |
|
||||||||||||||||||||||||| || || | ||||||| ||||||||||| | | | |||||||| | | || || ||||| |||| ||||| |
|
|
| T |
2904684 |
gaagtggatcctcaaatttcttttttgaagcttttgaatcccacatgtgtgaatggcggattacattggatcatagttgaagatggtcaacaaaagtcaa |
2904783 |
T |
|
| Q |
418 |
tattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttgga |
482 |
Q |
| |
|
||||| |||| | ||||||| ||||||| |||| ||||||||||||||||||||| |||||||| |
|
|
| T |
2904784 |
tattgtgtttcagttttgaaagtgagaggatgcaatcatttccttctcctccacatatgtttgga |
2904848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 277 - 613
Target Start/End: Complemental strand, 8644687 - 8644339
Alignment:
| Q |
277 |
tccttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttctttt---------tcgagtctaaagtatcccacttg |
367 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||| |||||| ||||||||||||||| || | |||||| | |||||||||| |
|
|
| T |
8644687 |
tccttgagataaacacacttggaacaccatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgagtcttcattatcccactta |
8644588 |
T |
|
| Q |
368 |
tgtgaatggtgcacttcattggataagatttgagggtcagcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcct |
467 |
Q |
| |
|
||| |||||||| ||||||||||| |||||||||| | | ||||||| |||||| |||||| ||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
8644587 |
tgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgttttgaaagtgagaggttgcaatcatttccttctcct |
8644488 |
T |
|
| Q |
468 |
ccacatgtgtttggaaatc---ataatgttttttgttgta---ggcctattagcatgggagaattaaagggatttctatacatttgtgatccgaccttta |
561 |
Q |
| |
|
||| |||||| ||||| |||||| ||| || ||| || |||| ||||||||||||||| |||||| || |||||||| ||| | | || |
|
|
| T |
8644487 |
cca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatac-atattct |
8644392 |
T |
|
| Q |
562 |
tatc-taatgtttcaatgtgggttatgaatgaatatggcattggagaatcatg |
613 |
Q |
| |
|
| || | ||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8644391 |
tttcgtgatgttgcaatgtgggttatgaatgaatatgacattggagaatcatg |
8644339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 27 - 145
Target Start/End: Original strand, 8547470 - 8547588
Alignment:
| Q |
27 |
tttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttcataa |
126 |
Q |
| |
|
|||||||||||||||||||||| ||| || |||||||||||||| ||| || |||||||| |||||||||||||| ||| |||| ||||||||||||| |
|
|
| T |
8547470 |
tttgatattgtgaattcttgcagtggcttgctttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaatccaatcacaggggagttcataa |
8547569 |
T |
|
| Q |
127 |
gacttcctgaatctactac |
145 |
Q |
| |
|
|||||| |||| ||||||| |
|
|
| T |
8547570 |
gacttcttgaagctactac |
8547588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 263 - 470
Target Start/End: Complemental strand, 8678304 - 8678087
Alignment:
| Q |
263 |
gtttgagcgtgtgatccttgagataaacacacttggaa-caacatcctggagaaatgttgaagtggatcctcaaatttctttt---------tcgagtct |
352 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| |||||| || |||| |||||||||| |||||||||||||||||||||| || | ||| || |
|
|
| T |
8678304 |
gtttgatcgtatgatccttgagataaacacaattggaaacaccatcatggagaaatgctgaagtggatcctcaaatttctattggatcagatttgaggct |
8678205 |
T |
|
| Q |
353 |
aaagtatcccacttgtgtgaatggtgcacttcattggataagatttgagggtcagcaaaggtcaatattggttttctgctttgaaaatgagaggttgcag |
452 |
Q |
| |
|
|||||||||||| | |||||||| ||||||||||| ||||||||||||| ||| ||| |||||| |||||| || |||| ||||| |||||| |
|
|
| T |
8678204 |
ccgttatcccacttgtattaatggtgcgcttcattggatcggatttgagggtcaagaaatgtctatattgtgtttctgtttagaaactgagaagttgcaa |
8678105 |
T |
|
| Q |
453 |
tcatttccttctcctcca |
470 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
8678104 |
tcatttccttctcctcca |
8678087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 280 - 491
Target Start/End: Original strand, 8547750 - 8547957
Alignment:
| Q |
280 |
ttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatggtgc |
379 |
Q |
| |
|
|||||||| ||||||| |||||| || | ||||||||| ||||||||||||||||||||| ||| ||| | ||||||||||||||||||| |||| |
|
|
| T |
8547750 |
ttgagatacacacactcggaacaccaacatggagaaat----aagtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcgtgc |
8547845 |
T |
|
| Q |
380 |
acttcattggataagatttgagggtcagcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgttt |
479 |
Q |
| |
|
|||||||||||| ||||| ||| | | |||| |||||| ||| || ||||||| |||||||| || ||||||||||||||| || ||||||| |
|
|
| T |
8547846 |
acttcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcatttccttctccttcatctgtgttt |
8547945 |
T |
|
| Q |
480 |
ggaaatcataat |
491 |
Q |
| |
|
| |||||||||| |
|
|
| T |
8547946 |
gaaaatcataat |
8547957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 24 - 137
Target Start/End: Original strand, 2844435 - 2844548
Alignment:
| Q |
24 |
aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca |
123 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||| ||||| ||||| | |||| ||| |||||||| ||||||||||| ||| |||| |||| |
|
|
| T |
2844435 |
aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaacccagtaacgagggaattca |
2844534 |
T |
|
| Q |
124 |
taagacttcctgaa |
137 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
2844535 |
caatacttcctgaa |
2844548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 260 - 400
Target Start/End: Complemental strand, 3380943 - 3380803
Alignment:
| Q |
260 |
ggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtat |
359 |
Q |
| |
|
|||||| |||||||| | ||||||||| |||| | ||||||||||| | ||||||| ||||||||||||||||||||||||||| || || | || |
|
|
| T |
3380943 |
ggtgttcgagcgtgtagtgcttgagatacacacgttcggaacaacatcatagagaaatcttgaagtggatcctcaaatttcttttttgaagcttttgaat |
3380844 |
T |
|
| Q |
360 |
cccacttgtgtgaatggtgcacttcattggataagatttga |
400 |
Q |
| |
|
||||| |||||||| || | |||||||||||| | |||||| |
|
|
| T |
3380843 |
cccacatgtgtgaacggcggacttcattggatcatatttga |
3380803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 568 - 613
Target Start/End: Complemental strand, 8637039 - 8636994
Alignment:
| Q |
568 |
atgtttcaatgtgggttatgaatgaatatggcattggagaatcatg |
613 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8637039 |
atgttgcaatgtgggttatgaatgaatatggcattggagaatcatg |
8636994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 574 - 613
Target Start/End: Original strand, 2904938 - 2904977
Alignment:
| Q |
574 |
caatgtgggttatgaatgaatatggcattggagaatcatg |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2904938 |
caatgtgggttatgaatgaatatggcattggagaatcatg |
2904977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 8644956 - 8644833
Alignment:
| Q |
20 |
tgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggag |
119 |
Q |
| |
|
||||||||||| | ||||||||||||||||||| || ||||||||| | | |||| | |||| |||||||| || ||||| |||||||| |||||| |
|
|
| T |
8644956 |
tgataagtttggtgttgtgaattcttgcaatggcttgctttgtttgcgtcatccatttgaaggaagaccattagtaatttgcaatccagtcactggggag |
8644857 |
T |
|
| Q |
120 |
ttcataagacttcctgaatctact |
143 |
Q |
| |
|
|| |||||||||||| || ||||| |
|
|
| T |
8644856 |
tttataagacttcctaaagctact |
8644833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 509 - 598
Target Start/End: Original strand, 8547984 - 8548073
Alignment:
| Q |
509 |
tattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatgg |
598 |
Q |
| |
|
||||||| |||||||||||||||||| ||| ||||||||||| || || | | ||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
8547984 |
tattagcttgggagaattaaagggatgtctttacatttgtgactggaactatctctcttatgttacaatgtgggttatgaacgaatatgg |
8548073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 568 - 613
Target Start/End: Complemental strand, 8677986 - 8677941
Alignment:
| Q |
568 |
atgtttcaatgtgggttatgaatgaatatggcattggagaatcatg |
613 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8677986 |
atgttgcaatgtgggatatgaatgaatatggcattggagaatcatg |
8677941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 8644787 - 8644747
Alignment:
| Q |
177 |
gctggttttggattccaacctaaaactaatgaatataaggt |
217 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8644787 |
gctgcttttggcttccaacctaaaactaatgaatataaggt |
8644747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 11354043 - 11354082
Alignment:
| Q |
184 |
ttggattccaacctaaaactaatgaatataaggtaataag |
223 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11354043 |
ttggcttccaacctaaaactaatgaatataaggtgataag |
11354082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 11373350 - 11373311
Alignment:
| Q |
184 |
ttggattccaacctaaaactaatgaatataaggtaataag |
223 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11373350 |
ttggcttccaacctaaaactaatgaatataaggtgataag |
11373311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 9004132 - 9004088
Alignment:
| Q |
90 |
ttagtgatctgcaacccagtcacgggggagttcataagacttcct |
134 |
Q |
| |
|
|||||| | |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
9004132 |
ttagtggtatgcaacccagtcactggggaattcataagacttcct |
9004088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 11 - 613
Target Start/End: Complemental strand, 9443833 - 9443231
Alignment:
| Q |
11 |
cagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9443833 |
cagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccaatagtgatctgcaacccagtc |
9443734 |
T |
|
| Q |
111 |
acgggggagttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443733 |
acgggggagttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaat |
9443634 |
T |
|
| Q |
211 |
ataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443633 |
ataaggtaataagcgtgtggataagacatgttaaacaagccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctg |
9443534 |
T |
|
| Q |
311 |
gagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatggtgcacttcattggataagatttgagggtcagcaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
9443533 |
gagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatggtgcacttcattggataagatttgaggatgagcaa |
9443434 |
T |
|
| Q |
411 |
aggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataatgttttttgttgtaggccta |
510 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
9443433 |
aggtcaatattggttttctgctttgaaagtgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataatgtttattgtagtaggccta |
9443334 |
T |
|
| Q |
511 |
ttagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaatc |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443333 |
ttagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaatc |
9443234 |
T |
|
| Q |
611 |
atg |
613 |
Q |
| |
|
||| |
|
|
| T |
9443233 |
atg |
9443231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 11 - 612
Target Start/End: Original strand, 48361223 - 48361830
Alignment:
| Q |
11 |
cagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtc |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
48361223 |
cagagattttgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgatccatctttgggaaacccgttagtgatctgcaacccagtc |
48361322 |
T |
|
| Q |
111 |
acgggggagttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaat |
210 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| | |||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48361323 |
acaggggagttcataagacttcctgaatctactgcgtatcgaactcgggtaagaatgcaaggacaagctggttttggtttccaacctaaaactaatgaat |
48361422 |
T |
|
| Q |
211 |
ataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctg |
310 |
Q |
| |
|
||||||| |||| | ||||| | ||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48361423 |
ataaggtgataaacatgtgggtgagacatgttaaacgtgccaatgcgtgggagtttgagcgtgtgatccttgagataaacacacttggaacaccatcctg |
48361522 |
T |
|
| Q |
311 |
gagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatggtgcacttcattggataagatttgagggtcagcaa |
410 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48361523 |
gaggaatgttgaagtggatcctcacatttctttttcgagtctcgagtatcccacttgtgtgaatggtgcacttcattggataagatttgagggtcagcaa |
48361622 |
T |
|
| Q |
411 |
aggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataat------gttttttgttgta |
504 |
Q |
| |
|
|||||||||||| ||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| || || || | |
|
|
| T |
48361623 |
aggtcaatattgtttttctgttttgaaagtgagagggtgcagtcatttccttctcctccacatgtgtttggaaatcataataatggaattcttggtaaca |
48361722 |
T |
|
| Q |
505 |
ggcctattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattgg |
604 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48361723 |
ggcatattagcatgggagaattaaagggatttctttacatttgtgactcgacctttgcatctgatgtttcaatgtgggttatgaatgaatatggtattga |
48361822 |
T |
|
| Q |
605 |
agaatcat |
612 |
Q |
| |
|
|||||||| |
|
|
| T |
48361823 |
agaatcat |
48361830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 31 - 610
Target Start/End: Complemental strand, 35780544 - 35779958
Alignment:
| Q |
31 |
atattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaa-cccattagtgatctgcaacccagtcacgggggagttcataagac |
129 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||| | |||| | | ||| ||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35780544 |
atattgtcaattcttgcaatggtttgctttgtttgtctaatccatataccgaaaaaccctttagtgatttgcaacccagtcacgggggagttcataagac |
35780445 |
T |
|
| Q |
130 |
ttcctgaatctactacaaatc------ga------ac---tcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaatataa |
214 |
Q |
| |
|
|||||||| ||||||| | || || || |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35780444 |
ttcctgaagctactacgactcctttaagattaaatacggatcgagtaagaatgcaaggacaagctggttttggtttccaacctaaaactaatgaatataa |
35780345 |
T |
|
| Q |
215 |
ggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctggaga |
314 |
Q |
| |
|
||| |||| | ||||||||||||||| ||| ||||||| | ||||||||||| ||||| ||||| || ||||||||||||||| || |||| |||||| |
|
|
| T |
35780344 |
ggtgataaaaatatggataagacatgttcaacgtgccaatgattgggtgtttgatcgtgttatcctcgaaataaacacacttggagcaccatcatggaga |
35780245 |
T |
|
| Q |
315 |
aatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatggtgcacttcattggataagatttgagggtcagcaaaggt |
414 |
Q |
| |
|
| ||||||||||||||||| |||||| |||| || || ||||||||||||||||||||||||| ||||| ||||| | ||||||||| || |||| || |
|
|
| T |
35780244 |
actgttgaagtggatcctcgtatttctatttcaagccttaagtatcccacttgtgtgaatggtgtgcttcactggatcaaatttgaggggcaacaaaagt |
35780145 |
T |
|
| Q |
415 |
caatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataatgttttttgttgtaggcctattag |
514 |
Q |
| |
|
||||||| ||| || |||||| ||||||||||||| |||||||||||||||||||||||||||||| |||| | | ||||| |||||| |
|
|
| T |
35780144 |
caatattatgtttttgttttgaaggtgagaggttgcagccatttccttctcctccacatgtgtttggaattcatga---------taataggcgtattag |
35780054 |
T |
|
| Q |
515 |
catgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaatc |
610 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| || ||| | | ||||| ||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
35780053 |
catgggagaattaaagggatttctttacatttgtgacttgaatttttttgttgatgttacaatgtgggttatgaatgagcatggcattgaagaatc |
35779958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 9e-47; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 197 - 551
Target Start/End: Complemental strand, 5131316 - 5130959
Alignment:
| Q |
197 |
taaaactaatgaatataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacactt |
296 |
Q |
| |
|
||||||||||||||||||||| |||| | ||| |||| |||||||||| |||| || |||| ||||||||||||||||||||||||| |||| ||| |
|
|
| T |
5131316 |
taaaactaatgaatataaggtgataaaaatatgggtaaggcatgttaaacgtgccgttcgttgggagtttgagcgtgtgatccttgagatacacactctt |
5131217 |
T |
|
| Q |
297 |
ggaacaacatcctggagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatggtgcacttcattggataagat |
396 |
Q |
| |
|
|||||| || |||||||||||||||||||||| ||| |||||| ||||||| || ||| ||| ||||||||||||| ||||||||||||| | || |
|
|
| T |
5131216 |
ggaacattgtcatggagaaatgttgaagtggatcttcagatttctatttcgaggcttgagtgtcctacttgtgtgaatgacacacttcattggatcatat |
5131117 |
T |
|
| Q |
397 |
ttgagggtcagcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataatgtttt |
496 |
Q |
| |
|
||| | |||||||| | ||| |||| | ||||||| |||||| ||||| ||||| |||||||||||||| ||||||| ||||||||||| ||| |
|
|
| T |
5131116 |
atgatcttagaaaaaggtcattgttgtgtttcagttttgaaagtgagagattgcaatcattcccttctcctccacacgtgtttgaaaatcataatgattt |
5131017 |
T |
|
| Q |
497 |
ttgttgta---ggcctattagcatgggagaattaaagggatttctatacatttgtgat |
551 |
Q |
| |
|
|| | | | || ||| ||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
5131016 |
ttatggcaccgagcatatcggcatgggagaattaaagggatttctttacatttctgat |
5130959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 242 - 320
Target Start/End: Original strand, 26324109 - 26324187
Alignment:
| Q |
242 |
taaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctggagaaatgtt |
320 |
Q |
| |
|
||||| ||| ||||| ||||| ||||||||||||||||||| ||| ||||||||||||||| | ||||||||||||||| |
|
|
| T |
26324109 |
taaacgtgctaatcaatgggtttttgagcgtgtgatccttgggatgaacacacttggaacaccgtcctggagaaatgtt |
26324187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 562 - 613
Target Start/End: Original strand, 26324198 - 26324249
Alignment:
| Q |
562 |
tatctaatgtttcaatgtgggttatgaatgaatatggcattggagaatcatg |
613 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26324198 |
tatctgatgtttcaatgtgggttatgaatgaatatggcactggagaatcatg |
26324249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 5e-27; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 280 - 466
Target Start/End: Complemental strand, 16716833 - 16716647
Alignment:
| Q |
280 |
ttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatggtgc |
379 |
Q |
| |
|
|||||||| ||||||| |||||| || | ||||||||| | | ||||||||||||||||| ||||| |||| | | |||||||||||||||||||||| |
|
|
| T |
16716833 |
ttgagatacacacactcggaacaccaacatggagaaatatcaatgtggatcctcaaatttcattttcatgtcttatgaatcccacttgtgtgaatggtgc |
16716734 |
T |
|
| Q |
380 |
acttcattggataagatttgagggtcagcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcc |
466 |
Q |
| |
|
|||||||||| | | ||||||||| | ||| ||| |||||| ||| || ||||||| ||||| |||||| |||||||||||||| |
|
|
| T |
16716733 |
acttcattggttcacatttgagggaagggaaatgtctatattgtgtttttgttttgaaagtgagaagttgcattcatttccttctcc |
16716647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 16717108 - 16716982
Alignment:
| Q |
20 |
tgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggag |
119 |
Q |
| |
|
|||||||||| ||||||||||||| || ||||| || || ||||||||||| ||| || ||||||||| ||||||||||||||||| ||| |||||| |
|
|
| T |
16717108 |
tgataagtttaatattgtgaattcatgtaatggcttgctatgtttgtctgaaccaactactggaaaccctatagtgatctgcaacccattcatgggggaa |
16717009 |
T |
|
| Q |
120 |
ttcataagacttcctgaatctactaca |
146 |
Q |
| |
|
|||||||||||||||||| |||||||| |
|
|
| T |
16717008 |
ttcataagacttcctgaaactactaca |
16716982 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 509 - 613
Target Start/End: Complemental strand, 16716577 - 16716473
Alignment:
| Q |
509 |
tattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaa |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| | | ||| | ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16716577 |
tattagcatgggagaattaaagggatttctatacatttctgactcaaacttcttcgaatatgttacaatgtgggttatgaatgaatatggcattggagaa |
16716478 |
T |
|
| Q |
609 |
tcatg |
613 |
Q |
| |
|
||||| |
|
|
| T |
16716477 |
tcatg |
16716473 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 282 - 466
Target Start/End: Complemental strand, 5130 - 4948
Alignment:
| Q |
282 |
gagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatggtgcac |
381 |
Q |
| |
|
|||||| ||||||| |||||| || | ||||||||| | | ||||||||||||||||| ||||| |||| | | |||||||||||||||||||||||| |
|
|
| T |
5130 |
gagatacacacactcggaacatcaacatggagaaatatcaatgtggatcctcaaatttcattttcatgtcttatgaatcccacttgtgtgaatggtgcac |
5031 |
T |
|
| Q |
382 |
ttcattggataagatttgagggtcagcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcc |
466 |
Q |
| |
|
|||||||||| ||||||||||| || ||| ||| ||||| ||| || ||||| | |||||||||||| |||||||| ||||| |
|
|
| T |
5030 |
ttcattggatcagatttgagggaaaggaaacgtc--tattgtgtttttgttttgacagtgagaggttgcaatcatttccctctcc |
4948 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 32 - 137
Target Start/End: Complemental strand, 5398 - 5293
Alignment:
| Q |
32 |
tattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttcataagactt |
131 |
Q |
| |
|
|||||||||||| || ||||| || || ||||||||| | ||| || |||||||| |||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
5398 |
tattgtgaattcctgtaatggcttgctatgtttgtctcaaccaactaccggaaaccctttagtgatctgcaacccattcatgggggagttcataagactt |
5299 |
T |
|
| Q |
132 |
cctgaa |
137 |
Q |
| |
|
|||||| |
|
|
| T |
5298 |
cctgaa |
5293 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 509 - 613
Target Start/End: Complemental strand, 4878 - 4774
Alignment:
| Q |
509 |
tattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaa |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| | | || || ||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4878 |
tattagcatgggagaattaaagggatttctttacatttgtgactcaaactccttaaaatatgttacaatgtgggttatgaatgaatatggcattggtgaa |
4779 |
T |
|
| Q |
609 |
tcatg |
613 |
Q |
| |
|
||||| |
|
|
| T |
4778 |
tcatg |
4774 |
T |
|
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