View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6264_high_9 (Length: 433)

Name: NF6264_high_9
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6264_high_9
NF6264_high_9
[»] chr4 (16 HSPs)
chr4 (11-417)||(3749100-3749506)
chr4 (12-417)||(5858213-5858618)
chr4 (19-417)||(5564956-5565354)
chr4 (29-417)||(5605283-5605672)
chr4 (271-417)||(5582983-5583129)
chr4 (32-417)||(5886000-5886385)
chr4 (241-415)||(5570778-5570952)
chr4 (29-417)||(5894845-5895233)
chr4 (242-417)||(5852659-5852834)
chr4 (301-417)||(5847785-5847901)
chr4 (270-418)||(5553616-5553764)
chr4 (300-404)||(5538926-5539030)
chr4 (230-404)||(5559376-5559550)
chr4 (19-93)||(5852983-5853057)
chr4 (19-93)||(5553367-5553441)
chr4 (29-78)||(252329-252378)
[»] chr8 (2 HSPs)
chr8 (32-264)||(1483224-1483456)
chr8 (312-417)||(1485703-1485808)
[»] scaffold0454 (1 HSPs)
scaffold0454 (312-417)||(884-990)


Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 11 - 417
Target Start/End: Original strand, 3749100 - 3749506
Alignment:
Q  11 cacagattcaagtaactcagttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaaagtagataactttctca 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3749100 cacagattcaagtaactcagttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaaagtagataattttctca 3749199  T
Q  111 ggtttccaataatgttaggtaatgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaagccatg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3749200 ggtttccaataatgttaggtaatgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaagccatg 3749299  T
Q  211 gagatttttgttgttaaacaagtcaatagttgacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagg 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3749300 gagatttttgttgttaaacaagtcaatagttgacagtgttccaatctgaaagattgcatgtggaaatgtaccggtcaattcacaaagcgcaagactgagg 3749399  T
Q  311 gtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttaggg 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3749400 gtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttaggg 3749499  T
Q  411 aagaatc 417  Q
    |||||||    
T  3749500 aagaatc 3749506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 12 - 417
Target Start/End: Original strand, 5858213 - 5858618
Alignment:
Q  12 acagattcaagtaactcagttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaaagtagataactttctcag 111  Q
    |||||| ||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||   ||||||||  ||||     
T  5858213 acagatccaagtaactgaggtgtgtgaggtttgacaatgaatttggaagggttccattaaattgacaaaaagaaagatccaattcagataactgcctcaa 5858312  T
Q  112 gtttccaataatgttaggtaatgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaagccatgg 211  Q
    ||| ||||||  | ||||||||| |||| |||||||||||| ||| ||||||||| | |||||||||||||| | |||||||| ||||||  | ||| ||    
T  5858313 gttgccaatagagctaggtaatggtccagagaagtttgtgtcactcactctaattctatgaagagattcacttagtgagtagtttggaaatgaaccacgg 5858412  T
Q  212 agatttttgttgttaaacaagtcaatagttgacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgaggg 311  Q
    ||||||| ||||  ||| ||||||||    |||| ||||||||||||||||||     |||||||||||||||  ||| ||||||  |||||||||||||    
T  5858413 agattttcgttggaaaataagtcaatcacagacaatgttccaatctgaaagatcttctgtggaaatgtaccggataatgcacaaaatgcaagactgaggg 5858512  T
Q  312 tggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttaggga 411  Q
    | ||||||||||||||||| ||||||||||  || ||||| |||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||    
T  5858513 tagtcaagtttttaaaatttgcaaatgtttcaggaactggggatgaaaaatagttctcatcaagaataatgactgataggttctctagttttgttaggga 5858612  T
Q  412 agaatc 417  Q
    ||||||    
T  5858613 agaatc 5858618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 19 - 417
Target Start/End: Original strand, 5564956 - 5565354
Alignment:
Q  19 caagtaactcagttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaaagtagataactttctcaggtttcca 118  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||   |||||||||||  ||||||| |  ||||  || |||    
T  5564956 caagtaactgaggtgtgtgaggtttgacaatgaatttggaagtgttccattaaattgacaactggaaagatccaatttagataagtgcctcaatttgcca 5565055  T
Q  119 ataatgttaggtaatgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaagccatggagatttt 218  Q
    |||  | |||||||||||||| |||||||||||| ||| ||| ||||  | |||||||||||||| | |||||||| ||| ||  | ||||||||||| |    
T  5565056 atagagctaggtaatgctccagagaagtttgtgtaactcactataatgctatgaagagattcacttagtgagtagtctgggaatgaaccatggagattgt 5565155  T
Q  219 tgttgttaaacaagtcaatagttgacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaa 318  Q
     |||     | |||||||||   |||| |||| |||||||||| ||     |||||||||||||||||||  |||||    ||||||||||||||||||     
T  5565156 agttaaatgataagtcaataacagacaatgtttcaatctgaaaaatattttgtggaaatgtaccggtcaacccacaatctacaagactgagggtggtcag 5565255  T
Q  319 gtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttagggaagaatc 417  Q
    |||||||||||||||||||||||  |||||||| ||||||||||| ||  || ||||||||||||||||||||||||||||| |||  |||||||||||    
T  5565256 gtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagaataatgactgataggttctctagttttgaaagggaagaatc 5565354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 29 - 417
Target Start/End: Original strand, 5605283 - 5605672
Alignment:
Q  29 agttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaaagtagataactttctcaggtttccaataatgttag 128  Q
    |||||||||||||||||||||||||| | |||||||||||| |||||||||   ||||||| |||   |||||| |  |||| ||| ||||||  | |||    
T  5605283 agttgtgtgaggtttgacaatgaattggaaagtgttccattaaattgacaactggaaagatacaattcagataagtgcctcaagttgccaatagagctag 5605382  T
Q  129 gtaatgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaag-ccatggagatttttgttgttaa 227  Q
    ||||||||||| ||||| ||||||||||  |  ||||  | |||||||||||||| | |||||||| |||||||||  ||||| || ||   ||||| |     
T  5605383 gtaatgctccagagaagcttgtgttactcgccataatgctgtgaagagattcactaagtgagtagtctggaaaaaaaaccatgaaggttagggttgtcag 5605482  T
Q  228 acaagtcaatagttgacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaa 327  Q
    | |||||||||  ||||||||||| ||| ||||| ||     |||||||||| || |||||| |||||     |||| |||||||||| | |||||||||    
T  5605483 ataagtcaatatctgacagtgttctaatttgaaatatattttgtggaaatgttccagtcaatccacaatcgttaagattgagggtggttaggtttttaaa 5605582  T
Q  328 attggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttagggaagaatc 417  Q
    ||||||||||||||  |||||||| ||||||||||||||||||||||||| |||||| |||| ||||||||  |||| ||||||||||||    
T  5605583 attggcaaatgtttctggcactggggatgaaaaattgttcccatcaagaagaatgacagataagttctctaaccttgctagggaagaatc 5605672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 271 - 417
Target Start/End: Complemental strand, 5583129 - 5582983
Alignment:
Q  271 tggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttccca 370  Q
    ||||||| |||| |||||| |||||   ||||||||||||||||| || ||||| ||||||| ||||||||  |||||||| ||||||||||||||||||    
T  5583129 tggaaatttaccagtcaatccacaagatgcaagactgagggtggttaattttttgaaattggaaaatgtttgtggcactggggatgaaaaattgttccca 5583030  T
Q  371 tcaagaataatgactgataggttctctagtcttgttagggaagaatc 417  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  5583029 tcaagaataatgactgataggttctttagtcttgttagggaagaatc 5582983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 32 - 417
Target Start/End: Complemental strand, 5886385 - 5886000
Alignment:
Q  32 tgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaa-agtagataactttctcaggtttccaataatgttaggt 130  Q
    |||||||| ||||||| |||||| |||||||||||||  | |||||| ||||||| |||||| || || ||| ||| ||| ||| || ||| |||| ||     
T  5886385 tgtgtgagatttgacagtgaattgggaagtgttccatatagttgacagaaagaaatatccaataggag-taagtttgtcatgttaccgatattgtttgga 5886287  T
Q  131 aatgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaagccatggagatttttgttgttaaaca 230  Q
    ||||||||| ||||| |||||||||| ||||||||  | |||||| ||||||| | |||||| |  || |||||  ||||||||||   ||||| | | |    
T  5886286 aatgctccagagaagcttgtgttactcactctaatgctatgaagatattcactaagtgagtaatcagggaaaaaaacatggagattggggttgtcagata 5886187  T
Q  231 agtcaatagttgacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaatt 330  Q
    |||||||| |||||||||||| ||| || |||||     ||||||||||| | |||||| | |||     |||| |||||||||| | ||||||||||||    
T  5886186 agtcaataattgacagtgttctaatttggaagatcttttgtggaaatgtatctgtcaatccgcaattttgaagattgagggtggttaggtttttaaaatt 5886087  T
Q  331 ggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttagggaagaatc 417  Q
    |||||||||||  |||||||| ||||||||||||||| |  ||||||||||||| ||||||||||||||| |||  ||||| |||||    
T  5886086 ggcaaatgtttgtggcactggggatgaaaaattgttctcgccaagaataatgaccgataggttctctagttttgaaagggaggaatc 5886000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 241 - 415
Target Start/End: Complemental strand, 5570952 - 5570778
Alignment:
Q  241 tgacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaattggcaaatgtt 340  Q
    ||||| ||||||||| ||||||||     ||||||||||||| |||||| |||||   | ||||||||||||||| |  ||||||||||||| |||||||    
T  5570952 tgacaatgttccaatttgaaagatattttgtggaaatgtacctgtcaatccacaagatgaaagactgagggtggttagttttttaaaattggaaaatgtt 5570853  T
Q  341 ttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttagggaagaa 415  Q
    |  |||||| | ||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5570852 tctggcactagggatgagaaatagttcccatcaagaataatgactgataggttctttagtcttgttagggaagaa 5570778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 29 - 417
Target Start/End: Complemental strand, 5895233 - 5894845
Alignment:
Q  29 agttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaaagtagataactttctcaggtttccaataatgttag 128  Q
    ||||||||||||||||||| |||||| |||||||||||||  | ||||||  |||||||||||||     |||| ||| ||| ||| || ||  |||  |    
T  5895233 agttgtgtgaggtttgacagtgaattgggaagtgttccatatagttgacagtaagaaagatccaattccaataagtttgtcatgttaccgatgttgtgtg 5895134  T
Q  129 gtaatgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaagccatggagatttttgttgttaaa 228  Q
    | | || |||| ||||| |||||||||  | | ||||  | |||||||||||||| | |||||||| |||||||||  | ||||||||   ||||  | |    
T  5895133 gaagtggtccagagaagcttgtgttacgcaatataatgctatgaagagattcactaagtgagtagtctggaaaaaaaacttggagattggggttgccaga 5895034  T
Q  229 caagtcaatagttgacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaa 328  Q
     |||||||||  ||||||||| | ||| || |||||     |||||||||||||| ||||| ||||      |||| |||||||||| | ||||||||||    
T  5895033 taagtcaataactgacagtgtcctaatttggaagatcttttgtggaaatgtaccgatcaatccacactttcgaagattgagggtggttaggtttttaaaa 5894934  T
Q  329 ttggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttagggaagaatc 417  Q
    |||||||||||||  |||| ||  |||||||||||||| | || ||||||||||||||| ||||||| |||||||| ||||||||||||    
T  5894933 ttggcaaatgtttctggcaatgaggatgaaaaattgtttcgataaagaataatgactgacaggttctgtagtcttgatagggaagaatc 5894845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 242 - 417
Target Start/End: Complemental strand, 5852834 - 5852659
Alignment:
Q  242 gacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaattggcaaatgttt 341  Q
    |||||||||||||||||||||||     ||||||||||||| |||||| |||||   | |||||| |||||||||| ||||| |||||| ||||||||||    
T  5852834 gacagtgttccaatctgaaagatcttctgtggaaatgtaccagtcaatccacaatctgaaagactaagggtggtcaggttttgaaaattagcaaatgttt 5852735  T
Q  342 tcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttagggaagaatc 417  Q
      || || || || ||||||||||||| |||||||||||||||||||||||||  |||| ||| ||||||||||||    
T  5852734 ctggaacgggggaagaaaaattgttcctatcaagaataatgactgataggttccttagttttgatagggaagaatc 5852659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 301 - 417
Target Start/End: Complemental strand, 5847901 - 5847785
Alignment:
Q  301 aagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagt 400  Q
    |||| |||||||||| | |||||||||||||||||||||||  |||||||| |||||||| |||||| || |||||| |||||| |  ||||||||||||    
T  5847901 aagattgagggtggttaggtttttaaaattggcaaatgtttgtggcactggggatgaaaagttgttctcaccaagaacaatgaccgtcaggttctctagt 5847802  T
Q  401 cttgttagggaagaatc 417  Q
    |||||||||||||||||    
T  5847801 cttgttagggaagaatc 5847785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 270 - 418
Target Start/End: Original strand, 5553616 - 5553764
Alignment:
Q  270 gtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttccc 369  Q
    ||||||||||||| || ||| |||||   | |||||| |||||||||| ||||| |||||||||||||||||  || || || || |||||||||||||     
T  5553616 gtggaaatgtacctgttaatccacaagatgtaagactaagggtggtcaggttttgaaaattggcaaatgtttctggaacgggggaagaaaaattgttcct 5553715  T
Q  370 atcaagaataatgactgataggttctctagtcttgttagggaagaatct 418  Q
    ||||||||||||||| |||||||| | |||| ||| |||||||||||||    
T  5553716 atcaagaataatgaccgataggttttttagttttgatagggaagaatct 5553764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 404
Target Start/End: Complemental strand, 5539030 - 5538926
Alignment:
Q  300 caagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctag 399  Q
    ||||||| ||||| ||||| ||| | ||||||| ||||||||  |||||||| || ||||||||||| ||||| ||||||||||  ||||| ||||||||    
T  5539030 caagactaagggtagtcaaatttctgaaattggaaaatgtttcaggcactggggaagaaaaattgtttccatcgagaataatgatcgatagattctctag 5538931  T
Q  400 tcttg 404  Q
    |||||    
T  5538930 tcttg 5538926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 230 - 404
Target Start/End: Original strand, 5559376 - 5559550
Alignment:
Q  230 aagtcaatagttgacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaat 329  Q
    |||||||||  ||||| ||||||||| || |||||   | ||||||||||| | ||||||  ||||   |||||||| ||||| ||||| ||| | ||||    
T  5559376 aagtcaataaatgacaatgttccaatttggaagatcttatgtggaaatgtatcagtcaatctacaagctgcaagactaagggttgtcaaatttctgaaat 5559475  T
Q  330 tggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttg 404  Q
    ||| ||||||||  ||||| || || ||||||||||| ||||||||||||||||  ||||  |||| ||||||||    
T  5559476 tggaaaatgtttcaggcaccggggaagaaaaattgtttccatcaagaataatgatcgataaattctttagtcttg 5559550  T

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Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 5853057 - 5852983
Alignment:
Q  19 caagtaactcagttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaa 93  Q
    ||||||||| |||| ||| |||||||| |||||||| |||||||||||||| |||||| ||  ||||||||||||    
T  5853057 caagtaacttagttctgttaggtttgaaaatgaattgggaagtgttccattaaattgagaattagaaagatccaa 5852983  T

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Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 5553367 - 5553441
Alignment:
Q  19 caagtaactcagttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaa 93  Q
    ||||||||| |||| ||| |||||||| |||||||| ||||||||||||||  ||||| ||  ||||||||||||    
T  5553367 caagtaacttagttctgttaggtttgaaaatgaattgggaagtgttccattatattgagaattagaaagatccaa 5553441  T

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Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 252378 - 252329
Alignment:
Q  29 agttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgaca 78  Q
    |||| ||||||||||||||||||||| |||||||| ||||| ||||||||    
T  252378 agttttgtgaggtttgacaatgaattgggaagtgtaccattaaattgaca 252329  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 264
Target Start/End: Original strand, 1483224 - 1483456
Alignment:
Q  32 tgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaaagtagataactttctcaggtttccaataatgttaggta 131  Q
    ||||||||||| |||| |||||| |||||||||||||| ||||||||  ||| |||||||||   |||||| |  ||||  || ||||||  ||| ||||    
T  1483224 tgtgtgaggttggacattgaattgggaagtgttccattaaattgacagtaaggaagatccaattcagataagtacctcaatttgccaatagagtttggta 1483323  T
Q  132 atgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaagccatggagatttttgttgttaaacaa 231  Q
    || ||||  | ||  |||||| ||| ||||||||| |  ||||||||||||| | |||||||| ||||||  | ||||| ||||  ||||||| | | ||    
T  1483324 attctcctgataaacttgtgtaactaactctaattctacgaagagattcactaagtgagtagtttggaaatgaaccatgaagatcgttgttgtaatataa 1483423  T
Q  232 gtcaatagttgacagtgttccaatctgaaagat 264  Q
    ||| |||  |||||||| | |||||||||||||    
T  1483424 gtcgataaatgacagtgctgcaatctgaaagat 1483456  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 417
Target Start/End: Original strand, 1485703 - 1485808
Alignment:
Q  312 tggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttaggga 411  Q
    |||||| |||||||||||||| ||||||||  || | ||| ||||||| |||||||  ||||||||||||||  | ||||||||||||| |||  |||||    
T  1485703 tggtcaggtttttaaaattggtaaatgtttctggaattggcgatgaaagattgttcttatcaagaataatgatggttaggttctctagttttgaaaggga 1485802  T
Q  412 agaatc 417  Q
     |||||    
T  1485803 ggaatc 1485808  T

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Target: scaffold0454 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 417
Target Start/End: Original strand, 884 - 990
Alignment:
Q  312 tggtcaagtttttaaaatt-ggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttaggg 410  Q
    |||||| |||||||||||| || ||||||||  || | ||| ||||||| |||||||  ||||||||||||||  | ||||||||||||| |||  ||||    
T  884 tggtcaggtttttaaaattaggtaaatgtttctggaattggcgatgaaagattgttcttatcaagaataatgatggttaggttctctagttttgaaaggg 983  T
Q  411 aagaatc 417  Q
    | |||||    
T  984 aggaatc 990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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