View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6264_low_1 (Length: 749)
Name: NF6264_low_1
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6264_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 489
Target Start/End: Original strand, 23105841 - 23106329
Alignment:
| Q |
18 |
gtaagcaggtcatggacaagcaatgttggatcacgtagcttgtgaaagtggaattaaggcttatgccaactttannnnnnnnnnnnnnnna--attattg |
115 |
Q |
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| T |
23105841 |
gtaagcaggtcatggacaagcaatgttggatcacgtagcttgtgaaagtggaattaaggcttatgccaactttattttttaatttttttttttattattg |
23105940 |
T |
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| Q |
116 |
ttggttatgttacaatccttgggatctaatgttgttatttgttttattttaagctttgcaaacttatgaataaaaacattattgtattatttatattttg |
215 |
Q |
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| T |
23105941 |
ttggttatgttagaatccttgggatctaatgttgttatttgttttatttttagctttgcaaacttatgaataaaaacattattgtattatttatattttg |
23106040 |
T |
|
| Q |
216 |
taaaataaagattatgtttttataatgtgaaaaactagtgtgcataagtgtttatttttaccgtatgtaatggtat---tgtgtagtttaatatagagat |
312 |
Q |
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| T |
23106041 |
taaaataaagattatgtttttataatgtgaaaaactagtgtgcataagtgtttatttttaccgtatgtaatggtatttatgtgtagtttaatatagagat |
23106140 |
T |
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| Q |
313 |
gcctttaatcaacacaaaaggttttatataatccacatttctatttcgccaagaactaatagaatattttgttatttaatatacacatcatgaaatgtta |
412 |
Q |
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| T |
23106141 |
gcctttaatcaacacaaaaggttttatataacccatatttctatttcgccaagaactaatagaatattttgttatttaatatacacatcatgaaatgtta |
23106240 |
T |
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| Q |
413 |
ttatcaatttatgaggttcgtggtgatctta------------attattctcaagagcaatgttatttgaacaaccaaaatttgtaatg |
489 |
Q |
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| T |
23106241 |
ttatcaatttatgaggttcgtggtgatcttaatctcaagtggtattattctcaagaggaatgttatttgaacaaccaaaacttataatg |
23106329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 491 - 743
Target Start/End: Original strand, 23106655 - 23106909
Alignment:
| Q |
491 |
atttgacaattgtataaaaataatatacaccatttattactattgatttgacttaagagaagagnnnnnnnn--ttaacaaatgaaaatgtatagaaata |
588 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
23106655 |
atttgacaattgtataaaaatagtatacaccatttattactattgatttgacttaaggaaagagaaaaaaaaaattaacaaatgaaaatgtatagaaata |
23106754 |
T |
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| Q |
589 |
cattgtttaacaattaaatggttgttcaaataacatttctctattctctaagtatggtgtcacacactcttaccatctacaacnnnnnnnnnnnnnnnnn |
688 |
Q |
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| T |
23106755 |
tgttgtttaacgattaaatggttgtccaaataacatttctctattctctaagtatggtgctacacactcttaccatctacaacttttattttattttatt |
23106854 |
T |
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| Q |
689 |
nnncgaaaatgactttctatttatcattttcaatgatgcctgttgatgatgtcca |
743 |
Q |
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| T |
23106855 |
tttcgaaaatgactttctatttatcattttcaatgatgcctgttgatgctgtcca |
23106909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 578 - 630
Target Start/End: Original strand, 28650093 - 28650145
Alignment:
| Q |
578 |
gtatagaaatacattgtttaacaattaaatggttgttcaaataacatttctct |
630 |
Q |
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| T |
28650093 |
gtatataaatacatagttagacaattaaatggttgttcaaataacatttctct |
28650145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 599 - 632
Target Start/End: Original strand, 49365280 - 49365313
Alignment:
| Q |
599 |
caattaaatggttgttcaaataacatttctctat |
632 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
49365280 |
caataaaatggttgttcaaataacatttctctat |
49365313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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