View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6264_low_10 (Length: 424)

Name: NF6264_low_10
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6264_low_10
NF6264_low_10
[»] chr2 (6 HSPs)
chr2 (19-414)||(1175345-1175739)
chr2 (271-358)||(18633943-18634030)
chr2 (192-243)||(4700533-4700584)
chr2 (111-181)||(2483675-2483744)
chr2 (184-241)||(18633886-18633943)
chr2 (111-181)||(2479211-2479282)
[»] chr6 (1 HSPs)
chr6 (19-173)||(3950638-3950792)
[»] chr4 (3 HSPs)
chr4 (181-315)||(3283463-3283600)
chr4 (111-166)||(54146811-54146866)
chr4 (191-239)||(18194769-18194817)
[»] chr5 (1 HSPs)
chr5 (192-246)||(12593379-12593437)
[»] scaffold0002 (2 HSPs)
scaffold0002 (191-239)||(286229-286277)
scaffold0002 (191-239)||(292585-292633)
[»] chr3 (1 HSPs)
chr3 (184-240)||(395990-396046)
[»] chr7 (1 HSPs)
chr7 (136-181)||(10414228-10414273)


Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 414
Target Start/End: Original strand, 1175345 - 1175739
Alignment:
Q  19 actaattaaattagcgtaacctaggaagaagaaacaaaccggaattgtagcgtgcaaactgaatcgatcatcaaataccagaacaaatatattcccaaac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1175345 actaattaaattagcgtaacctaggaagaagaaacaaaccggaattgtaacgtgcaaactgaattgatcatcaaataccagaacaaatatattcccaaac 1175444  T
Q  119 ttttgggattcgacagtggaagcgactagtggttcaagacggatcaaaccatgctcttgatactgaattaggaaagaaattatgaactaaatcatactaa 218  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  1175445 ttttgggattcgacagcggaagcgactagtggttcaagacg-atcaaaccatactcttgatactgaattatgaaagaaattatgaactaaatcatactaa 1175543  T
Q  219 aaataagaaataataatgtttgtctctacaaaacagaaaaattaagagacaatatgtcgtagaaaaactctgaattttgcctaatacttactatttttgc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1175544 aaataagaaataataatgtttgtctctacaaaacagaaaaattaagagacaatatgtcatagaaaaactctgaattttgcctaatacttactatttttgc 1175643  T
Q  319 ttgcaaggtgagaaaaatttgtttgagatctgcaccatatatgaatttatgatgcacttccatgacataagtagcactgcagcaaagtggcctatg 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1175644 ttgcaaggtgagaaaaatttgtttgagatctgcaccatatatgaatttatgatgcacttccatgacataagtagcactgcagcaaagtggcctatg 1175739  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 271 - 358
Target Start/End: Original strand, 18633943 - 18634030
Alignment:
Q  271 tatgtcgtagaaaaactctgaattttgcctaatacttactatttttgcttgcaaggtgagaaaaatttgtttgagatctgcaccatat 358  Q
    |||||| |||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||| || ||||| ||| |||||    
T  18633943 tatgtcatagaaaaactctgatttttgcctaataattactatttttgattgcaaggtgagaaaaatttgctttagatccgcatcatat 18634030  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 4700533 - 4700584
Alignment:
Q  192 aagaaattatgaactaaatcatactaaaaataagaaataataatgtttgtct 243  Q
    |||||| |||||||||||| |||||||||||||||||||||| |||||||||    
T  4700533 aagaaactatgaactaaattatactaaaaataagaaataatattgtttgtct 4700584  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 2483744 - 2483675
Alignment:
Q  111 tcccaaacttttgggattcgacagtggaagcgactagtggttcaagacggatcaaaccatgctcttgatac 181  Q
    |||||||||||||| ||||||| |  ||||||| |||||||||||| |||||| |||||||||||||||||    
T  2483744 tcccaaacttttggaattcgacggcagaagcgattagtggttcaag-cggatcgaaccatgctcttgatac 2483675  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 18633886 - 18633943
Alignment:
Q  184 aattaggaaagaaattatgaactaaatcatactaaaaataagaaataataatgtttgt 241  Q
    ||||| |||||||| ||| |||||||||||| |||| |||||||||||||||||||||    
T  18633886 aattatgaaagaaactatcaactaaatcatattaaagataagaaataataatgtttgt 18633943  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 2479282 - 2479211
Alignment:
Q  111 tcccaaacttttgggattcgacagtggaagcgactagtggttcaaga-cggatcaaaccatgctcttgatac 181  Q
    |||||| ||||||| ||||||| |||||| ||| ||||||||||| |  |||||||||||||||||| ||||    
T  2479282 tcccaagcttttggaattcgacggtggaaacgattagtggttcaaaagaggatcaaaccatgctcttcatac 2479211  T

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Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 3950792 - 3950638
Alignment:
Q  19 actaattaaattagcgtaacctaggaagaagaaacaaaccggaattgtagcgtgcaaactgaatcgatcatcaaataccagaacaaatatattcccaaac 118  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| |||||    
T  3950792 actaataaaattagcgtaacctaggaagaagaaacaaaccggaattgtaacgtgcaaactgaatcgatcatcaaataccaaaccaaatatattctcaaac 3950693  T
Q  119 ttttgggattcgacagtggaagcgactagtggttcaagacggatcaaaccatgct 173  Q
    ||||| ||||||| ||  |||| ||| ||||||||||| ||||||||||||||||    
T  3950692 ttttgagattcgatagcagaagtgacaagtggttcaaggcggatcaaaccatgct 3950638  T

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Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 181 - 315
Target Start/End: Original strand, 3283463 - 3283600
Alignment:
Q  181 ctgaattaggaaagaaattatgaactaaatcatactaaaaataagaaataataatgtttgtctctacaaa--acagaaaaattaagagacaata-tgtcg 277  Q
    |||||||  |||||||| |||| ||||||||||||||||||||||||||||||||||| | ||||| |||  ||| ||||| ||||||| |||| ||||     
T  3283463 ctgaattttgaaagaaactatgtactaaatcatactaaaaataagaaataataatgttcgcctctagaaagcacataaaaagtaagagataatactgtca 3283562  T
Q  278 tagaaaaactctgaattttgcctaatacttactatttt 315  Q
    ||||||| |||||| |||||| ||||| ||||||||||    
T  3283563 tagaaaatctctgatttttgcttaataattactatttt 3283600  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 54146866 - 54146811
Alignment:
Q  111 tcccaaacttttgggattcgacagtggaagcgactagtggttcaagacggatcaaa 166  Q
    |||||||||||||||||||||||| ||||||||| || |||||||| |||||||||    
T  54146866 tcccaaacttttgggattcgacagcggaagcgacaagcggttcaaggcggatcaaa 54146811  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 18194769 - 18194817
Alignment:
Q  191 aaagaaattatgaactaaatcatactaaaaataagaaataataatgttt 239  Q
    ||||||| |||||||||||| ||||||||||||||||| ||||||||||    
T  18194769 aaagaaactatgaactaaattatactaaaaataagaaaaaataatgttt 18194817  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 12593379 - 12593437
Alignment:
Q  192 aagaaattatgaactaaatcatactaaaaa----taagaaataataatgtttgtctcta 246  Q
    |||||| |||||||||||||||||||||||    |||||||||||||||||||||||||    
T  12593379 aagaaactatgaactaaatcatactaaaaaaaagtaagaaataataatgtttgtctcta 12593437  T

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Target: scaffold0002 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 286277 - 286229
Alignment:
Q  191 aaagaaattatgaactaaatcatactaaaaataagaaataataatgttt 239  Q
    ||||||| |||||||||||| ||||||||||||||||| ||||||||||    
T  286277 aaagaaactatgaactaaattatactaaaaataagaaaaaataatgttt 286229  T

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Target: scaffold0002; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 292633 - 292585
Alignment:
Q  191 aaagaaattatgaactaaatcatactaaaaataagaaataataatgttt 239  Q
    ||||||| |||||||||||| ||||||||||||||||| ||||||||||    
T  292633 aaagaaactatgaactaaattatactaaaaataagaaaaaataatgttt 292585  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 396046 - 395990
Alignment:
Q  184 aattaggaaagaaattatgaactaaatcatactaaaaataagaaataataatgtttg 240  Q
    ||||| |||||||| ||||| |||||| |||||||||||||||||||| | ||||||    
T  396046 aattatgaaagaaactatgagctaaattatactaaaaataagaaataacattgtttg 395990  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 10414273 - 10414228
Alignment:
Q  136 ggaagcgactagtggttcaagacggatcaaaccatgctcttgatac 181  Q
    ||||||||| ||  |||||| |||||||||||||||||||||||||    
T  10414273 ggaagcgacaagccgttcaaaacggatcaaaccatgctcttgatac 10414228  T

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