View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6264_low_12 (Length: 410)
Name: NF6264_low_12
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6264_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 52709720 - 52709322
Alignment:
| Q |
1 |
cattttcattgcaattaaagcttttcannnnnnnagaaacagctatttgggattacagcgattctatttttggaaaatctatttgaattatagctagttc |
100 |
Q |
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| T |
52709720 |
cattttcattgcaattacagcttttcatttttttagaaacagctatttgggattacagcgattctatttttggaaaatctatttgaattatagctagttc |
52709621 |
T |
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| Q |
101 |
ataatgtgtgacagagctgttgatggagattaaatagaaagacattaattcattatctaccatcctttatttcgactgactagtactttattttcatact |
200 |
Q |
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| T |
52709620 |
ataatgtgtgacagagctgttgatggagattaaatagaaagacattaattcattatctaccatcctttatttcgactgactagtactttattttcatact |
52709521 |
T |
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| Q |
201 |
ccatttttctagtgaaactcaatggcgataatgacgtcttctttactctttatttatcaatttttgatataagatcttgatttgtttatgaaaaaagcca |
300 |
Q |
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| T |
52709520 |
ccatttttctagtgaatctcaatggcgataatgacgtcttctttactctttatttatcaatttttgatataagatcttgatttgtttatgaaaaaagcca |
52709421 |
T |
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| Q |
301 |
tatggtgcgaatcaaacaaactatcgtaaaaaagccacgaatgacctgagctttaatttttcgattcaaattctttagaaaatgaagttgcagcagccc |
399 |
Q |
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| T |
52709420 |
tatggtgcgaatcaaacaaactatcgtaaaaaacccacgaatgacctgagctttaatttttcgattcaaattctttagaaaatgaagttgcagcagccc |
52709322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 317 - 405
Target Start/End: Original strand, 26398718 - 26398806
Alignment:
| Q |
317 |
caaactatcgtaaaaaagccacgaatgacctgagctttaatttttcgattcaaattctttagaaaatgaagttgcagcagccctatgct |
405 |
Q |
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| T |
26398718 |
caaactatcgtaaaaaatttacgaatgacctgagctttaatttttcaattcaaattctttagaaaatgaagttgccaaagccctatgct |
26398806 |
T |
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