View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6264_low_14 (Length: 402)
Name: NF6264_low_14
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6264_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 14 - 389
Target Start/End: Original strand, 33769394 - 33769769
Alignment:
| Q |
14 |
ttctatcagaatcagcgttatgtcattgcaaatcctggcgattttgttttgtatgtgattgggaaattttgaatacaatcatagttcgaatgagaagagg |
113 |
Q |
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| T |
33769394 |
ttctatcagaatcagcattatgtcattgcaaatcctggcgattttgttttgtatgtgattgggaaattttgaatacaatcatagttcgaatgagaagagg |
33769493 |
T |
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| Q |
114 |
agaattggaaccaaatgaatctcattattcccatatatacatatatcaggaatcatgttgtaaaaccagaactatatgtgaagtaaatacatcataagtt |
213 |
Q |
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| T |
33769494 |
agaattggaaccaaatgaatctcattattcccatatatacatatatcaggaatcatgttgtaaaaccagaactatatgtgaagtaaatacatcataagtt |
33769593 |
T |
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| Q |
214 |
agtaatgagtacaaaaatagattctattatggttgtttccttttcctactggtattagacgcaatatctgatcatgcatgatatgtatgtgaagtaagca |
313 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33769594 |
agtaaggagtacaaaaatagattctattatggttgtttccttttcctactggtattagacgcaatatctgatcatgcatgatatatatgtgaagtaagca |
33769693 |
T |
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| Q |
314 |
catgacagattatgatccaaataatctattatgaccatcgtccttatatagtataataccaattcaccaaattgtt |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33769694 |
catgacagattatgatccaaataatctattatgaccatcgtccttatatagtataataccaattcaccaaattgtt |
33769769 |
T |
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