View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6264_low_18 (Length: 376)
Name: NF6264_low_18
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6264_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 14 - 358
Target Start/End: Original strand, 44547708 - 44548055
Alignment:
| Q |
14 |
atattaacaactcgtcttgtgaagtaaactttctatcaataccgaactatatatgatataattgtagacaggaaaacacactcgtgattatataattcga |
113 |
Q |
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| T |
44547708 |
atattaacaactcgttttgtgaagtaaactttctatcaataccgaactatatatgatataattgtagacaggaaaacacactcgtgattatataattcga |
44547807 |
T |
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| Q |
114 |
agtgtgttttttgttaagaaataagggaactgccaaaggaaggtgatcgaaaaagagaagcatacatttcgtattttgtagtccgaaaaaacgatatttg |
213 |
Q |
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| T |
44547808 |
agtgggttttttgttaagaaataagggaactgccaaaggaaggtgatcgaaaaagagaagcatacatttcgtattttgtagtcccaaaaaacgatatttg |
44547907 |
T |
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| Q |
214 |
agggtgttaaataaatatttcaaaggacgcgagaaaggaaaacatctaaagctacacttcccgaccatggtccatccatcatcatttcactaacttgaat |
313 |
Q |
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| T |
44547908 |
agggtgttaaataaatatttcaaaggacgcgagaaaggaaaacatctaaagctacacttcccgaccatggtccatccatcatcatttcactaacttgaat |
44548007 |
T |
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| Q |
314 |
attttgtcc----ttgttcctcgctcatcttttgcagatggctgaaaat |
358 |
Q |
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| T |
44548008 |
attttgtccttgtttgttcctcgctcatc-tttgcagatggctgaaaat |
44548055 |
T |
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