View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6264_low_19 (Length: 373)

Name: NF6264_low_19
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6264_low_19
NF6264_low_19
[»] chr2 (4 HSPs)
chr2 (16-186)||(4736285-4736455)
chr2 (189-364)||(4732939-4733115)
chr2 (19-128)||(4744854-4744963)
chr2 (189-289)||(26511105-26511205)
[»] chr6 (4 HSPs)
chr6 (189-355)||(16118418-16118585)
chr6 (220-333)||(20995934-20996048)
chr6 (198-254)||(32054981-32055037)
chr6 (208-299)||(20996801-20996892)
[»] chr7 (4 HSPs)
chr7 (208-333)||(9024955-9025081)
chr7 (221-294)||(22581275-22581348)
chr7 (278-339)||(30334968-30335030)
chr7 (187-250)||(5987697-5987760)
[»] chr8 (2 HSPs)
chr8 (189-346)||(33137403-33137561)
chr8 (199-297)||(33136950-33137048)
[»] chr1 (3 HSPs)
chr1 (191-327)||(12658988-12659123)
chr1 (38-127)||(8136271-8136360)
chr1 (189-234)||(6396167-6396212)
[»] chr5 (4 HSPs)
chr5 (226-338)||(8589030-8589144)
chr5 (189-299)||(19828081-19828191)
chr5 (301-349)||(19043767-19043815)
chr5 (206-333)||(19828480-19828608)
[»] chr4 (2 HSPs)
chr4 (278-364)||(41982511-41982598)
chr4 (189-252)||(41982597-41982660)
[»] chr3 (2 HSPs)
chr3 (189-285)||(53114193-53114290)
chr3 (226-322)||(27647352-27647449)


Alignment Details
Target: chr2 (Bit Score: 163; Significance: 6e-87; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 4736455 - 4736285
Alignment:
Q  16 caccttcatgtagcctttctcaccccatgtttcaccccaagaattcttaatcaaccaatacttcttcccttcatcacttaccccataaccaattatagta 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  4736455 caccttcatgtagcctttctcaccccatgtttcaccccaagaattcttaatcaaccaatacttcttccctgcttcacttaccccataaccaattatagta 4736356  T
Q  116 actgcatggttcaacttgggtccacaacttccttcataaacccctcccatgtagtgatgaaaatcataact 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4736355 actgcatggttcaacttgggtccacaacttccttcataaacccctcccatgtagtgatgaaaatcataact 4736285  T

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Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 189 - 364
Target Start/End: Complemental strand, 4733115 - 4732939
Alignment:
Q  189 taaaagaacgtgttt-aaccgttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtg 287  Q
    |||||||| |||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4733115 taaaagaatgtgttttaactgttatttattatcttttgcatgtttaaa-tgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtg 4733017  T
Q  288 ttaaaaaccacta-aaattctctttgttttctacatccacaaacataggttattacaaatatgcggttgctttcatct 364  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||    
T  4733016 ttaaaaaccactataaattctctttgttttctacatccacaaacatatgttattataaatatgtggttgctttcatct 4732939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 4744963 - 4744854
Alignment:
Q  19 cttcatgtagcctttctcaccccatgtttcaccccaagaattcttaatcaaccaatacttcttcccttcatcacttaccccataaccaattatagtaact 118  Q
    ||||||||||||||  ||||||||   || ||||||||||||||||||||||||||||||  | || || |||||||| || ||||||| |  |||||||    
T  4744963 cttcatgtagccttcttcaccccaacctttaccccaagaattcttaatcaaccaatacttagttccatcttcacttacaccgtaaccaactgcagtaact 4744864  T
Q  119 gcatggttca 128  Q
    ||||||||||    
T  4744863 gcatggttca 4744854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 189 - 289
Target Start/End: Original strand, 26511105 - 26511205
Alignment:
Q  189 taaaagaacgtgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgt 288  Q
    ||||||||| | ||||||  ||||||||||  || ||||||||| |||||||  | |||| |||||||   ||||||||||||||||| |||||||||||    
T  26511105 taaaagaacatatttaactattatttattacattctgcatgtttgaaatgaaacttcatctatgttgaatgtagtctccaaggtcttcatgcaaaagtgt 26511204  T
Q  289 t 289  Q
    |    
T  26511205 t 26511205  T

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Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 189 - 355
Target Start/End: Complemental strand, 16118585 - 16118418
Alignment:
Q  189 taaaagaacgtgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgt 288  Q
    ||||||||  ||||||||| |||||||||| ||||| |||||||||||||||||| ||| |||||||| | || |||| || ||||||||| ||||| ||    
T  16118585 taaaagaatatgtttaaccattatttattaccttttccatgtttaaaatgaagtttcattcatgttgaacataatctcaaaagtcttcgtgtaaaagggt 16118486  T
Q  289 taaaaaccac-taaaattctctttgttttctacatccacaaacataggttattacaaatatgcggttg 355  Q
    |||||| ||| | |||||||||||| ||||||| | || || |||| | ||||||||||||| |||||    
T  16118485 taaaaatcacttcaaattctctttgctttctacgttcataagcatatgctattacaaatatgtggttg 16118418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 220 - 333
Target Start/End: Original strand, 20995934 - 20996048
Alignment:
Q  220 cttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgttaaaaaccac-taaaattctctttgttttct 318  Q
    |||||||||||||||||||||||| |||| ||||| | | ||||||||||||||||  |  ||| || |  |||||||| | ||||||  ||||||||||    
T  20995934 cttttgcatgtttaaaatgaagttccatcaatgttcaacatagtctccaaggtctttatttaaatgtttgcaaaaccacttcaaattcaatttgttttct 20996033  T
Q  319 acatccacaaacata 333  Q
    |||||||||| ||||    
T  20996034 acatccacaagcata 20996048  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 32054981 - 32055037
Alignment:
Q  198 gtgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatccatgtt 254  Q
    ||||||||| ||||||||||||| ||||||||||| | |||||||| ||| ||||||    
T  32054981 gtgtttaactgttatttattatcatttgcatgtttgagatgaagtttcatacatgtt 32055037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 20996892 - 20996801
Alignment:
Q  208 gttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgttaaaaaccact 299  Q
    ||||||||||| ||||||| ||||| |||| ||||| |||||||||||| | ||| ||| || |   ||||||||||||||| |||| ||||    
T  20996892 gttatttattaccttttgcgtgtttgaaataaagtttcatccatgttgaacgtagcctcgaacgatctcgtgcaaaagtgttgaaaaacact 20996801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 208 - 333
Target Start/End: Complemental strand, 9025081 - 9024955
Alignment:
Q  208 gttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgttaaaaaccactaaaat-tc 306  Q
    |||||||||||  |||||||||||| |||||||||| ||||||| || | | ||||||||||||| ||| |||||||||||| |||||||||  ||| ||    
T  9025081 gttatttattactttttgcatgtttgaaatgaagtttcatccatcttcaacgtagtctccaaggtgttcatgcaaaagtgttgaaaaccacttcaatatc 9024982  T
Q  307 tctttgttttctacatccacaaacata 333  Q
    ||| |||||||||||||||||||||||    
T  9024981 tctctgttttctacatccacaaacata 9024955  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 294
Target Start/End: Complemental strand, 22581348 - 22581275
Alignment:
Q  221 ttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgttaaaaa 294  Q
    |||| ||||||||||||||| || |||||||||| | | |||| |||||| ||||| |||||||||||||||||    
T  22581348 ttttccatgtttaaaatgaactttcatccatgttaaccgtagtttccaagatcttcatgcaaaagtgttaaaaa 22581275  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 339
Target Start/End: Complemental strand, 30335030 - 30334968
Alignment:
Q  278 tgcaaaagtgttaaaaaccacta-aaattctctttgttttctacatccacaaacataggttat 339  Q
    |||||||||||  |||||||||  |||||||||||||||||||||||||||| |||| |||||    
T  30335030 tgcaaaagtgtggaaaaccacttgaaattctctttgttttctacatccacaagcatatgttat 30334968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 5987760 - 5987697
Alignment:
Q  187 tttaaaagaacgtgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatcca 250  Q
    ||||||| || |||||| || ||||||||||| ||||||||||||| ||| |||||| ||||||    
T  5987760 tttaaaaaaatgtgtttgactgttatttattaccttttgcatgtttgaaacgaagtttcatcca 5987697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 189 - 346
Target Start/End: Complemental strand, 33137561 - 33137403
Alignment:
Q  189 taaaagaacgtgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgt 288  Q
    ||||| |||||||||||  ||||||||||| |||||| |||||| | |||||||| ||| |||||| ||| ||  ||||||  | ||| |||||||||||    
T  33137561 taaaaaaacgtgtttaattgttatttattaccttttgaatgtttgacatgaagtttcattcatgttcagcgtaacctccaatttattcatgcaaaagtgt 33137462  T
Q  289 taaaaaccac-taaaattctctttgttttctacatccacaaacataggttattacaaat 346  Q
      |||||||| | ||||||||||||||||||| ||||||||| ||| | ||||| ||||    
T  33137461 ggaaaaccacttcaaattctctttgttttctatatccacaaatatatgctattataaat 33137403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 199 - 297
Target Start/End: Original strand, 33136950 - 33137048
Alignment:
Q  199 tgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgttaaaaacca 297  Q
    |||||||| ||||||||||| ||||||||| ||| |||||||||| |||||||||||| | |||  || |||||| ||  |||| |||||| |||||||    
T  33136950 tgtttaacggttatttattaccttttgcatatttgaaatgaagtttcatccatgttgaacgtagcatcaaaggtcgtcaggcaacagtgttgaaaacca 33137048  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 191 - 327
Target Start/End: Complemental strand, 12659123 - 12658988
Alignment:
Q  191 aaagaacgtgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgtta 290  Q
    |||||| |||||||||  ||||||||||  |||| ||||||| ||||||| || |||||||||| | | ||  ||| ||||||||| ||||||||||||     
T  12659123 aaagaatgtgtttaact-ttatttattacatttt-catgtttgaaatgaaatttcatccatgttcaacgtatcctcgaaggtcttcatgcaaaagtgttg 12659026  T
Q  291 aaaaccac-taaaattctctttgttttctacatccaca 327  Q
    |||||||| | |||||||||||||||||||||||||||    
T  12659025 aaaaccacttcaaattctctttgttttctacatccaca 12658988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 8136271 - 8136360
Alignment:
Q  38 ccccatgtttcaccccaagaattcttaatcaaccaatacttcttcccttcatcacttaccccataaccaattatagtaactgcatggttc 127  Q
    |||||| |||||||||||||||| ||||| | ||| || ||| |||| |||||||||||||| ||||| | ||||| |||  ||||||||    
T  8136271 ccccatctttcaccccaagaatttttaattatccattatttcctcccatcatcacttaccccgtaacccactatagcaacaacatggttc 8136360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 6396212 - 6396167
Alignment:
Q  189 taaaagaacgtgtttaaccgttatttattatcttttgcatgtttaa 234  Q
    |||||||| |||||||||  |||||||||||||||| |||||||||    
T  6396212 taaaagaatgtgtttaactattatttattatctttttcatgtttaa 6396167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 226 - 338
Target Start/End: Original strand, 8589030 - 8589144
Alignment:
Q  226 catgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgttaaaaaccac--taaaattctctttgttttctacatc 323  Q
    |||||||||||||||||| |||||||||| |   ||| |||||| |||||| |||||||||||| ||||||||  |||| || | |||||| |||||||     
T  8589030 catgtttaaaatgaagtttcatccatgttcaatgtagcctccaaagtcttcatgcaaaagtgttgaaaaccaccttaaatttttatttgttgtctacatg 8589129  T
Q  324 cacaaacataggtta 338  Q
    |||||||||| ||||    
T  8589130 cacaaacatatgtta 8589144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 189 - 299
Target Start/End: Original strand, 19828081 - 19828191
Alignment:
Q  189 taaaagaacgtgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgt 288  Q
    |||||||| |||||||||  |||||||||||||||||||| ||| |||||||| | |||| ||||||| | ||| || |||| | ||| || ||||||||    
T  19828081 taaaagaatgtgtttaactattatttattatcttttgcatatttgaaatgaagattcatcgatgttgaacctagccttcaagattttcatggaaaagtgt 19828180  T
Q  289 taaaaaccact 299  Q
    | |||| ||||    
T  19828181 tgaaaatcact 19828191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 19043815 - 19043767
Alignment:
Q  301 aaattctctttgttttctacatccacaaacataggttattacaaatatg 349  Q
    ||||||||||||||||||||| |||||| |||| |||||||||||||||    
T  19043815 aaattctctttgttttctacacccacaagcatatgttattacaaatatg 19043767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 333
Target Start/End: Complemental strand, 19828608 - 19828480
Alignment:
Q  206 ccgttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgttaaaaaccac-taaaat 304  Q
    ||||||| ||| | ||||||||||||| ||| ||| || ||| |||||| | | |||  || ||||||||| | ||||||||| ||||||||| | ||||    
T  19828608 ccgttatctataaccttttgcatgtttgaaacgaaatttcatgcatgttcaacgtagcatcgaaggtcttcattcaaaagtgtgaaaaaccacttcaaat 19828509  T
Q  305 tctctttgttttctacatccacaaacata 333  Q
    | |||||||||||| | ||||||| ||||    
T  19828508 tgtctttgttttcttcgtccacaagcata 19828480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 278 - 364
Target Start/End: Complemental strand, 41982598 - 41982511
Alignment:
Q  278 tgcaaaagtgttaaaaaccacta-aaattctctttgttttctacatccacaaacataggttattacaaatatgcggttgctttcatct 364  Q
    ||||||||||||||||||||||  |||||||||||||||||||||| | ||| |||| | ||||||||||||| ||||| || |||||    
T  41982598 tgcaaaagtgttaaaaaccacttcaaattctctttgttttctacattcccaagcatatgctattacaaatatgtggttgtttccatct 41982511  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 41982660 - 41982597
Alignment:
Q  189 taaaagaacgtgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatccatg 252  Q
    ||||||||| |||||||| ||||||||||| ||||| ||||||| |||| ||||| ||| ||||    
T  41982660 taaaagaacatgtttaactgttatttattaccttttacatgtttgaaattaagtttcattcatg 41982597  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 285
Target Start/End: Complemental strand, 53114290 - 53114193
Alignment:
Q  189 taaaagaacgtgtttaaccgtt-atttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaag 285  Q
    |||||||||||||||||| ||| |||||||| | ||||||||||| ||||||| || |||| ||||||| | ||||||| || |||||| || |||||    
T  53114290 taaaagaacgtgtttaactgtttatttattaccatttgcatgtttgaaatgaattttcatcgatgttgaacgtagtctcaaaagtcttcatgtaaaag 53114193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 322
Target Start/End: Complemental strand, 27647449 - 27647352
Alignment:
Q  226 catgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgttaaaaaccact-aaaattctctttgttttctacat 322  Q
    ||||||| |||||||||| ||||  | || | | ||| ||| |||||| || |||||||||||| ||||| ||| |||||||| ||||||||||||||    
T  27647449 catgtttgaaatgaagtttcatctgtattcaacgtagcctcaaaggtcgtcatgcaaaagtgttgaaaactacttaaaattctttttgttttctacat 27647352  T

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