View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6264_low_23 (Length: 359)
Name: NF6264_low_23
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6264_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 196 - 302
Target Start/End: Complemental strand, 7799469 - 7799358
Alignment:
| Q |
196 |
tattatgaaactagagaaaa-gtgaaaatgattcttattaaccttgaatgaagtgaatacaatcata----tatatacaagatgtaactgtactacactt |
290 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
7799469 |
tattatgaaactagagaaaatgtgaaaatgattcttattgcttgtgaatgaagtgagtacaatcatacatatatatacaagatgtaactgtactacactt |
7799370 |
T |
|
| Q |
291 |
aagctaattgta |
302 |
Q |
| |
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|||||||||||| |
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| T |
7799369 |
aagctaattgta |
7799358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 196 - 302
Target Start/End: Complemental strand, 7819459 - 7819348
Alignment:
| Q |
196 |
tattatgaaactagagaaaa-gtgaaaatgattcttattaaccttgaatgaagtgaatacaatcata----tatatacaagatgtaactgtactacactt |
290 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||| ||||||||||||||||||||||||||||| |
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| T |
7819459 |
tattatgaaactagagaaaatgtgaaaatgattcttattgcttgtgaatgaagtgagtacaataatacagatatatacaagatgtaactgtactacactt |
7819360 |
T |
|
| Q |
291 |
aagctaattgta |
302 |
Q |
| |
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|||||||||||| |
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| T |
7819359 |
aagctaattgta |
7819348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 7799102 - 7799058
Alignment:
| Q |
258 |
catatatatacaagatgtaactgtactacacttaagctaattgta |
302 |
Q |
| |
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|
| T |
7799102 |
catatatatacaagatgtaactgtactacacttaagctaattgta |
7799058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 7799252 - 7799208
Alignment:
| Q |
258 |
catatatatacaagatgtaactgtactacacttaagctaattgta |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7799252 |
catatatatacaagatgtaactgtactacacttaagctaattgta |
7799208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 261 - 316
Target Start/End: Complemental strand, 7818369 - 7818313
Alignment:
| Q |
261 |
atatatacaagatgtaactgtactacacttaagctaattgtacta-cacttaagcta |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
7818369 |
atatatacaagatgtaactgtactacacttaagctaattgtagtatcacttaagcta |
7818313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 7819238 - 7819197
Alignment:
| Q |
261 |
atatatacaagatgtaactgtactacacttaagctaattgta |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7819238 |
atatatacaagatgtaactgtactacacttaagctaattgta |
7819197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 6567344 - 6567417
Alignment:
| Q |
259 |
atatatatacaagatgtaactgtactacacttaagctaattgtactacacttaagctaactgtactatcactag |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||| |
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| T |
6567344 |
atatatatacaagatgtaactgtactacacttaagctaattgtacgacacataagctaattgtactatcactag |
6567417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 6567230 - 6567302
Alignment:
| Q |
196 |
tattatgaaactagagaaaa-gtgaaaatgattcttattaaccttgaatgaagtgaatacaatcatatatata |
267 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||| | |||||||||||||||| |
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|
| T |
6567230 |
tattatgaaactagagaaaatgtgaaaatgattcttattgcttgtgaatgaagtaagtacaatcatatatata |
6567302 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 22190850 - 22190796
Alignment:
| Q |
154 |
ggatcgtaacaaactctctcttcaaagagagct-ctaataccatattatgaaact |
207 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
22190850 |
ggatcgtaacaaactctctcttcaaagagagctactgataccatattatgaaact |
22190796 |
T |
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