View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6264_low_28 (Length: 310)
Name: NF6264_low_28
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6264_low_28 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 35766350 - 35766049
Alignment:
| Q |
9 |
agcataggccagtgacaacatggaagaaaaacgcgacgtgactctaattatcgataattctctcctagagaagaagtcctttgccgatcttggaatcata |
108 |
Q |
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| T |
35766350 |
agcagaggccagtgacaacatggaagaaaaacgcgacgtgactctaattatcgataattctctcctagtgaagaagtcctttgccgatcttggaatcgta |
35766251 |
T |
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| Q |
109 |
cctactggatggggggatgaagaagaaaaagaacaagtaacaaagcctcctgagccaaattatgcttctcatggatgggaattgaaccaacttgaaaatg |
208 |
Q |
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| T |
35766250 |
cctactggatggggggacgaagaggaaaaagatgaggtaagaaaaccttctgaaccaaattatgcttctcaaggatgggaattgaaccaacatgaaaatg |
35766151 |
T |
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| Q |
209 |
atgaaacaaactcctgggaacggtattgggcttctgttgataaacgtgcaaaagaatatggatggcaaaatgggcagaataattctcaaaggtggattca |
308 |
Q |
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| T |
35766150 |
atgaaacaaactcctgggaacgttattgggcttctgttgataaacgtgcaaaagaatatggatggaaaaatgggcagaataattctcaaaggcggattca |
35766051 |
T |
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| Q |
309 |
ga |
310 |
Q |
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| T |
35766050 |
ga |
35766049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 108 - 281
Target Start/End: Complemental strand, 35760768 - 35760598
Alignment:
| Q |
108 |
acctactggatggggggatgaagaagaaaaagaacaagtaacaaagcctcctgagccaaattatgcttctcatggatgggaattgaaccaacttgaaaat |
207 |
Q |
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| T |
35760768 |
acctactggatggggggacgaagaagaaaaagaa---gtaacaaagccttctgaaccgaattatgctgctcagggatgggaatcgaaccaacatgaaaat |
35760672 |
T |
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| Q |
208 |
gatgaaacaaactcctgggaacggtattgggcttctgttgataaacgtgcaaaagaatatggatggcaaaatgg |
281 |
Q |
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| T |
35760671 |
aatgaaacaaactcttgggaacagtatcgtgctcctgttgttgaacattcaaaagaatatggttggcgaaatgg |
35760598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 115 - 310
Target Start/End: Complemental strand, 35755618 - 35755423
Alignment:
| Q |
115 |
ggatggggggatgaagaagaaaaagaacaagtaacaaagcctcctgagccaaattatgcttctcatggatgggaattgaaccaacttgaaaatgatgaaa |
214 |
Q |
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| T |
35755618 |
ggatggggggacgaagaagaaaaagaagaagttagaaagccttctgagccaaattatgctggtcagggatgggaatcaaatcaacatgaaaataatgaaa |
35755519 |
T |
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| Q |
215 |
caaactcctgggaacggtattgggcttctgttgataaacgtgcaaaagaatatggatggcaaaatgggcagaataattctcaaaggtggattcaga |
310 |
Q |
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| T |
35755518 |
caaactcttgggaacaatatcttcctccaattgatgaacatgcaaaacaatatggttggcaaaatagtcacaatgattctcagaggtggattcaga |
35755423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 310
Target Start/End: Complemental strand, 35785648 - 35785549
Alignment:
| Q |
211 |
gaaacaaactcctgggaacggtattgggcttctgttgataaacgtgcaaaagaatatggatggcaaaatgggcagaataattctcaaaggtggattcaga |
310 |
Q |
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| T |
35785648 |
gaaacaaactcttgggaacagtatcatgctcctgttgatgaacatgcaaaagaatatgggtggaaaaatagtcagaatgattctcagaggtggattcaga |
35785549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 296
Target Start/End: Complemental strand, 35799201 - 35799016
Alignment:
| Q |
108 |
acctactggatggggggatgaagaagaaaaagaacaagtaacaaagcctcctgagccaaattatgcttctcatggatgggaattgaaccaacttgaaaat |
207 |
Q |
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| T |
35799201 |
acctactggatggggggacgaagaagac---gaaaagttaacaaagccttctgaaccaaattatgctgctctgggatgcgaatcaaaccaacatgaaaat |
35799105 |
T |
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| Q |
208 |
gatgaaacaaactcctgggaacggtattgggcttctgttgataaacgtgcaaaagaatatggatggcaaaatgggcagaataattctca |
296 |
Q |
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| T |
35799104 |
aatgaaacaaacttatgtgaacagtatcatgcgcccgttgaacatgctgcaaaagaacatggatggcaaaatggtcagaatgattctca |
35799016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 310
Target Start/End: Complemental strand, 35789429 - 35789374
Alignment:
| Q |
255 |
tgcaaaagaatatggatggcaaaatgggcagaataattctcaaaggtggattcaga |
310 |
Q |
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| T |
35789429 |
tgcaaaagaatatggatggaaaaatggtcagaatgattctcaaggatggaatcaga |
35789374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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