View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6264_low_30 (Length: 303)
Name: NF6264_low_30
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6264_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 284
Target Start/End: Complemental strand, 45409381 - 45409110
Alignment:
| Q |
12 |
atgaatttataattgtccaaaagtaatttcaggggtagtttgaaatttaagacaatagacacgaaatgaatctagatctatgatatgattnnnnnnnnnn |
111 |
Q |
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| T |
45409381 |
atgaatttataattgtccaaaagtaatttcaggggtagtttgaaatttaagacaatagacacgaaatgaatctagatctatgatatgattaaaaaataaa |
45409282 |
T |
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| Q |
112 |
nnnnnnnngctaagtagaggttgttaaagaggtgagcaaagggaagctctgtctaaactattaagcacgtgtaaggctaatcactctattatctaccacc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45409281 |
aataaaaagctaagtagaggttgttaaagaggtgagcaaagggaagctctgtctaaactattaagcacgtgtaaggctaatcactctattatctaccacc |
45409182 |
T |
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| Q |
212 |
gacagtgtttatgggaccttaatcacggattggattagtagcatttgaaatggttaagctagcataaacctta |
284 |
Q |
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|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45409181 |
gacagtgtttatggga-cttaatcacggattggattggtagcatttgaaatggttaagctagcataaacctta |
45409110 |
T |
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