View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6264_low_33 (Length: 295)
Name: NF6264_low_33
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6264_low_33 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 2486755 - 2486479
Alignment:
| Q |
1 |
gatgatctaaaatgaacattattttgaaattttaaaacattaaaaactatataattatcaggaactcatttcatacattttcccagatattattaattct |
100 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2486755 |
gatgaactcaaatgaacattattttgaaattttaaaacattaaaaactatataattatcaggaactcatttcatacattttcccagatattattaattct |
2486656 |
T |
|
| Q |
101 |
tgatatgaatcacttagtatggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgtgccaccattatcacatttcactttgcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2486655 |
tgatatgaatcacttagtatggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgagccaccattatcacatttcactttgcc |
2486556 |
T |
|
| Q |
201 |
acatccaacacgtagtgatttttcccaaaccacctgagtataatggtggcattcatgaccatcaatacatgagttag |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2486555 |
acatccaacacgtagtgatttttcccaaacaacctgagtataatggtggcattcatgaccatcaatacatgagttag |
2486479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 100 - 245
Target Start/End: Complemental strand, 2471135 - 2470990
Alignment:
| Q |
100 |
ttgatatgaatcacttagtatggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgtgccaccattatcacatttcactttgc |
199 |
Q |
| |
|
||||| ||| |||||||||| |||||||| ||||||||||||||||| || |||||||||||||||| |||||||| |||||||||||| ||||||||| |
|
|
| T |
2471135 |
ttgatctgagtcacttagtacggtaattgaccagcaatgttaccaggtgggtcataattgcaagtaatgaatgtgcctccattatcacatctcactttgc |
2471036 |
T |
|
| Q |
200 |
cacatccaacacgtagtgatttttcccaaaccacctgagtataatg |
245 |
Q |
| |
|
|||||||||||||| ||||||||||||| | |||||| |||||||| |
|
|
| T |
2471035 |
cacatccaacacgttgtgatttttcccatatcacctgggtataatg |
2470990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 121 - 218
Target Start/End: Complemental strand, 2478950 - 2478853
Alignment:
| Q |
121 |
ggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgtgccaccattatcacatttcactttgccacatccaacacgtagtga |
218 |
Q |
| |
|
||||||||||||| ||||||||| ||||||| |||||| |||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
2478950 |
ggtaattggccaggaatgttacctgggggataataattacaagtaacaaatgttccaccattattacatttcactttgccacatccaagacgtagtga |
2478853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 121 - 218
Target Start/End: Complemental strand, 2483454 - 2483357
Alignment:
| Q |
121 |
ggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgtgccaccattatcacatttcactttgccacatccaacacgtagtga |
218 |
Q |
| |
|
||||||||||||| ||| ||||| ||||||| |||||| |||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
2483454 |
ggtaattggccaggaatattacctgggggataataattacaagtaacaaatgttccaccattattacatttcactttgccacatccaagacgtagtga |
2483357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 103 - 255
Target Start/End: Complemental strand, 2474379 - 2474227
Alignment:
| Q |
103 |
atatgaatcacttagtatggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgtgccaccattatcacatttcactttgccac |
202 |
Q |
| |
|
|||||||||| |||||||||| || |||| | ||| |||||||| || ||||||||||||| ||||| || ||||||||||||||||||||| ||| |
|
|
| T |
2474379 |
atatgaatcaattagtatggtctttcgccaatatagttgccaggggggtcgtaattgcaagtaatgaatgttcctccattatcacatttcactttggcac |
2474280 |
T |
|
| Q |
203 |
atccaacacgtagtgatttttcccaaaccacctgagtataatggtggcattca |
255 |
Q |
| |
|
|||||| |||| || ||| |||||||||||||||||||||| |||||||| |
|
|
| T |
2474279 |
atccaatacgttttgtgtttctccaaaccacctgagtataatggaggcattca |
2474227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 3063339 - 3063405
Alignment:
| Q |
180 |
attatcacatttcactttgccacatccaacacgtagtgatttttcccaaaccacctgagtataatgg |
246 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| |||| ||| |||||| ||||||||||||||| |
|
|
| T |
3063339 |
attatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgagtataatgg |
3063405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 2462658 - 2462592
Alignment:
| Q |
180 |
attatcacatttcactttgccacatccaacacgtagtgatttttcccaaaccacctgagtataatgg |
246 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| |||| ||| |||||| ||||| ||||||||| |
|
|
| T |
2462658 |
attatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgggtataatgg |
2462592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 2466706 - 2466640
Alignment:
| Q |
180 |
attatcacatttcactttgccacatccaacacgtagtgatttttcccaaaccacctgagtataatgg |
246 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| |||| ||| |||||| ||||| ||||||||| |
|
|
| T |
2466706 |
attatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgggtataatgg |
2466640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 239
Target Start/End: Complemental strand, 2470108 - 2469972
Alignment:
| Q |
103 |
atatgaatcacttagtatggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgtgccaccattatcacatttcactttgccac |
202 |
Q |
| |
|
||||||||||||||||||||| || |||| | ||| || || || || ||||||||||||| ||||| || || |||| ||||||||||||| ||| |
|
|
| T |
2470108 |
atatgaatcacttagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccgttattacatttcactttggcac |
2470009 |
T |
|
| Q |
203 |
atccaacacgtagtgatttttcccaaaccacctgagt |
239 |
Q |
| |
|
|||||| ||| ||| ||| ||||||||||||||| |
|
|
| T |
2470008 |
atccaatccgttgtgtgtttctccaaaccacctgagt |
2469972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 18015981 - 18015915
Alignment:
| Q |
180 |
attatcacatttcactttgccacatccaacacgtagtgatttttcccaaaccacctgagtataatgg |
246 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| |||| ||| |||||| ||||||||||||||| |
|
|
| T |
18015981 |
attatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgagtataatgg |
18015915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University