View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6264_low_36 (Length: 277)
Name: NF6264_low_36
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6264_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 23 - 260
Target Start/End: Original strand, 28289387 - 28289624
Alignment:
| Q |
23 |
gattgagtgggtttgggatcattatggaagaggagagttacttgtggcaatggatgagaacttgaaaaaggattttgttgagaaacaagttgagtgtttg |
122 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||||| | ||||||||||| ||| ||||||||| | |||||||||||| ||||||||| |
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| T |
28289387 |
gattgagtgggtttgggatcatcatggaagaggagagctacttgtgaccatggatgagaatttgcgaaaggatttcgatgagaaacaagtagagtgtttg |
28289486 |
T |
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| Q |
123 |
atgattgttggattgtggtgtgctcatcctgatgttagtctaagatcatccattagacaagcaattcaagtgctaaattttgagattgcattgccaaatc |
222 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28289487 |
ttgattgttggattatggtgtgctcatcctgatgtaagtctaagaccatccattagacaagcaattcaagtgctaaattttgagattgctttgccaaatc |
28289586 |
T |
|
| Q |
223 |
ttcccctgaataggcctattgcaacctatcatgctcct |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
28289587 |
ttcccctgaataggcctattgcaacctatcatgctcct |
28289624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 23 - 259
Target Start/End: Complemental strand, 28304366 - 28304130
Alignment:
| Q |
23 |
gattgagtgggtttgggatcattatggaagaggagagttacttgtggcaatggatgagaacttgaaaaaggattttgttgagaaacaagttgagtgtttg |
122 |
Q |
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||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||| || ||||||| |||||||||||| ||||| ||| |
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| T |
28304366 |
gattgagtgggtttgggatcattatggaaaaggagagctacttgtggcaatggatgagaatttgaggaaagattttgatgagaaacaagtagagtgcttg |
28304267 |
T |
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| Q |
123 |
atgattgttggattgtggtgtgctcatcctgatgttagtctaagatcatccattagacaagcaattcaagtgctaaattttgagattgcattgccaaatc |
222 |
Q |
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| T |
28304266 |
atgattgttggattatggtgtgctcatcctgatgttagtctaagaccatcaattagacaagccattcaagtgcttaattttgaggtttccatgccaaatc |
28304167 |
T |
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| Q |
223 |
ttcccctgaataggcctattgcaacctatcatgctcc |
259 |
Q |
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| T |
28304166 |
ttccgccaaagaggccagttgcaacctatcatgctcc |
28304130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 23 - 260
Target Start/End: Complemental strand, 28294164 - 28293927
Alignment:
| Q |
23 |
gattgagtgggtttgggatcattatggaagaggagagttacttgtggcaatggatgagaacttgaaaaaggattttgttgagaaacaagttgagtgtttg |
122 |
Q |
| |
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|||||| ||| ||||||||||||||||||| |||||| ||||||| || |||||||| || ||| |||| ||||||| ||||||| |||| ||||| ||| |
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| T |
28294164 |
gattgaatggatttgggatcattatggaagtggagagctacttgtcgccatggatgaaaatttgcaaaatgattttgatgagaaagaagtagagtgcttg |
28294065 |
T |
|
| Q |
123 |
atgattgttggattgtggtgtgctcatcctgatgttagtctaagatcatccattagacaagcaattcaagtgctaaattttgagattgcattgccaaatc |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||| |||| |||||||||| |
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| T |
28294064 |
atgattgttggattgtggtgtgctcatcctgatgttagtcttagaccatcgattagacaagcaattcaagtgcttaattttgaggttgccttgccaaatc |
28293965 |
T |
|
| Q |
223 |
ttcccctgaataggcctattgcaacctatcatgctcct |
260 |
Q |
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|||| | || ||||| ||||||||||||||| |||| |
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| T |
28293964 |
ttccaccaaagaggccagttgcaacctatcatgttcct |
28293927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 24 - 261
Target Start/End: Complemental strand, 28264348 - 28264111
Alignment:
| Q |
24 |
attgagtgggtttgggatcattatggaagaggagagttacttgtggcaatggatgagaacttgaaaaaggattttgttgagaaacaagttgagtgtttga |
123 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||| | ||||||||||| ||| |||||||||||| |||||||||||| |||| |||| |
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| T |
28264348 |
attgactgggtttgggatcattatggaagaggagaactacttgtgactatggatgagaatttgcaaaaggattttgatgagaaacaagtagagtttttgt |
28264249 |
T |
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| Q |
124 |
tgattgttggattgtggtgtgctcatcctgatgttagtctaagatcatccattagacaagcaattcaagtgctaaattttgagattgcattgccaaatct |
223 |
Q |
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||||||||||||| |||||||||||||| ||||| ||| ||||| |||| ||| ||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
28264248 |
tgattgttggattatggtgtgctcatccggatgtaagtttaagaccatcaattgtgcaagcaattcaagtgcttaattttgaggttgcattgccaaatct |
28264149 |
T |
|
| Q |
224 |
tcccctgaataggcctattgcaacctatcatgctcctg |
261 |
Q |
| |
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||| | || | |||| ||||||| |||| |||||||| |
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| T |
28264148 |
tccaccaaagaagcctgttgcaacttatcttgctcctg |
28264111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 23 - 260
Target Start/End: Original strand, 28279522 - 28279759
Alignment:
| Q |
23 |
gattgagtgggtttgggatcattatggaagaggagagttacttgtggcaatggatgagaacttgaaaaaggattttgttgagaaacaagttgagtgtttg |
122 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||| ||| | ||||||||||| ||| ||||||||| | |||||||||||| ||||||||| |
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| T |
28279522 |
gattgagtgggtttgggatcattatggaagagaagaaatactcgtgaccatggatgagaatttgcgaaaggatttcgatgagaaacaagtagagtgtttg |
28279621 |
T |
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| Q |
123 |
atgattgttggattgtggtgtgctcatcctgatgttagtctaagatcatccattagacaagcaattcaagtgctaaattttgagattgcattgccaaatc |
222 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||| |||| |||||||||||||| |||||||| ||||||||| ||| |||||||| |
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| T |
28279622 |
ttgattgttggattatggtgtgttcatcctgatgttagtctaagaccatcgattagacaagcaatccaagtgcttaattttgaggttgacatgccaaatt |
28279721 |
T |
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| Q |
223 |
ttcccctgaataggcctattgcaacctatcatgctcct |
260 |
Q |
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| || | || || || |||||||||||||||||||| |
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| T |
28279722 |
tgccaccaaagagaccagttgcaacctatcatgctcct |
28279759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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