View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6264_low_38 (Length: 266)

Name: NF6264_low_38

Description: NF6264

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF6264_low_38

[»] chr4 (1 HSPs)

[»] chr1 (1 HSPs)

Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 117; E-Value: 1e-59

Query Start/End: Original strand, 15 - 252

Target Start/End: Original strand, 39630315 - 39630548

Alignment:

Q	15	gacaaagatgttaataaaagccattcaaacaagaaattttannnnnnnnatgaagttcgaggctcgaaatctaagaccatgagataaaggcaatacatgc	114	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39630315	gacaaagatgttaataaaagccattcaaacaagaaattttattttttt-atgaagttcgaggctcgaaatctaagaccatgagataaaggcaatacatgc	39630413	T

Q	115	acgaaattttannnnnnnnaattacgtcagttccatgctatcagacnnnnnnnnnnnnggatcattgttatagttttcattatcagttctatatggactc	214	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	39630414	acgaaatttta-tttttttaattacgtcagttccatgctatcacacaaaaaacaaaaaggatcattgt--tagttttcattatcagttccatatggactc	39630510	T

Q	215	aatgtcaaaccacaaccattagctcatcattaagtttt	252	Q
		\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	39630511	aacgtcaaaccacaaccattagctcatcatcaagtttt	39630548	T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 35; E-Value: 0.00000000009

Query Start/End: Original strand, 199 - 257

Target Start/End: Complemental strand, 28652323 - 28652265

Alignment:

Q	199	agttctatatggactcaatgtcaaaccacaaccattagctcatcattaagttttctgtg	257	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|
T	28652323	agttccatatggactaaatgttaaaccacaaccattagctaatcatcaagttttttgtg	28652265	T

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