View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6264_low_41 (Length: 249)
Name: NF6264_low_41
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6264_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 52102748 - 52102563
Alignment:
| Q |
1 |
aaagatgacatataagcaaaattatgctcaaaatcaggtagttgagaaaaattcaaaaacttgtgaagtgaactaaattttgagatttagaacgagtgga |
100 |
Q |
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| T |
52102748 |
aaagatgacatataagaaaaattaagctcaaaatcaggtagttgagaaaaattcaaaaacttgtgaagtgaactaaattttgagatttagaacgagtgga |
52102649 |
T |
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| Q |
101 |
ctaaaatcttaattcaattataattagaagatcaaaagtggattttaactataaaacagaaattgaacactagttgaatttgagat |
186 |
Q |
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| T |
52102648 |
ctaaaatcttaattcaataataattagaagatcaaaagtggattttaactataaaacagaaattgaacactagttgaatttgagat |
52102563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 52102525 - 52102475
Alignment:
| Q |
189 |
tatatatatgcaggaaacatcagcttttggtctatcctctggtgtgtctgt |
239 |
Q |
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| T |
52102525 |
tatatatatgcaggaaacatcaggttttgctctatcctctggtgtgtctgt |
52102475 |
T |
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