View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6264_low_45 (Length: 246)
Name: NF6264_low_45
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6264_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 52102892 - 52103098
Alignment:
| Q |
19 |
atttgagcctatatttaaaattaggtgaaggaaatgcatgtgtag---attcatttagttaccattccagcagtgcatgaattgagaagaatgcaagcaa |
115 |
Q |
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| T |
52102892 |
atttgagcctatattttaaattaggtgaaggaaatgcatgtgtagtagattcatttagttaccattccagcagtgcatgaattgagaagaatgcaagcaa |
52102991 |
T |
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| Q |
116 |
caactgcaccaagtaactgtgcaatccaatacaaaatacttctcaagaaggtaatgtttcctccaatgaaagcaccaaatgtgactgcagggttcacatg |
215 |
Q |
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| T |
52102992 |
caactgcaccaagtaactgtgcaatccaatacaaaatacttctcaagaaggtaatgtttcctccaatgaaagcaccaaatgtgactgcagggttcacatg |
52103091 |
T |
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| Q |
216 |
tccacca |
222 |
Q |
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||||||| |
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| T |
52103092 |
tccacca |
52103098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 7655767 - 7655618
Alignment:
| Q |
73 |
gttaccattccagcagt-gcatgaattgagaagaatgcaagcaacaactgcaccaagtaactgtgcaatccaatacaaaatacttctcaagaaggtaatg |
171 |
Q |
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| T |
7655767 |
gttaccattccaccagtagca-gacttgagaagaatacaagcaacaactgaaccaagtaactgtgcaatccaatataaaatacttctcaaaagtgtaatg |
7655669 |
T |
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| Q |
172 |
tttcctccaatgaaagcaccaaatgtgactgcagggttcacatgtccacca |
222 |
Q |
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| T |
7655668 |
tttcctccaatgaaggcaccaaatgtgactgcagggttcacatgtccacca |
7655618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 23339616 - 23339502
Alignment:
| Q |
108 |
gcaagcaacaactgcaccaagtaactgtgcaatccaatacaaaatacttctcaagaaggtaatgtttcctccaatgaaagcaccaaatgtgactgcaggg |
207 |
Q |
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|||||||||||| | |||||| ||||| |||||||||||||||| | ||| | || ||||||| ||| |||||||| |||||||| ||||| |||||| |
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| T |
23339616 |
gcaagcaacaacagaaccaagcaactgagcaatccaatacaaaaggcctctaatgagtgtaatgtgtccaccaatgaatgcaccaaaagtgacagcaggg |
23339517 |
T |
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| Q |
208 |
ttcacatgtccacca |
222 |
Q |
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| T |
23339516 |
ttgacatgtccacca |
23339502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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