View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6264_low_5 (Length: 611)
Name: NF6264_low_5
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6264_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 19 - 599
Target Start/End: Complemental strand, 40383116 - 40382536
Alignment:
| Q |
19 |
cctatgtccttgcacactccatcatctctctccctgcactcatcttcctctccttcgccttctccgtcaccactttttggtctgttggacttgccggcgg |
118 |
Q |
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| T |
40383116 |
cctatgtccttgcacactccatcatctctctccctgcactcatcttcctctccttcgccttctccgtcaccactttttggtctgttggacttgccggcgg |
40383017 |
T |
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| Q |
119 |
gacatctggtttcctcttttactttttcaccattttagcttccttctgggctgggagctccttcgtcacgttcctctccggcgttgtttcgcatgtgatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40383016 |
gacatctggtttcctcttttactttttcaccattttagcttccttctgggctgggagctccttcgtcacgttcctctccggcgttgtttcgcatgtgatg |
40382917 |
T |
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| Q |
219 |
cttggtttcaccgttgtggttgctattttagcttactttcttctcttcagtggattcttcatcagtagggataggattccaccttactggatatggttcc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40382916 |
cttggtttcaccgttgtggttgctattttagcttactttcttctcttcagtggattcttcataagtagggataggattccaccttactggatatggttcc |
40382817 |
T |
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| Q |
319 |
attacctatcactggtgaagtacccttttgaaggagtgcttcagaatgagtttgatattaagccaccaaggtgcttcgtcaaagggattcagatgtttga |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40382816 |
attacctatcactggtgaagtacccttttgaaggagtgcttcagaatgagtttgatattaagccaccaaggtgcttcgtcaaagggattcagatgtttga |
40382717 |
T |
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| Q |
419 |
taacactccgcttggtgatgtcccagggagtttgaaggttgagctgttgaagagcttgagtagtacactagggactaacataacgagttctacttgtgtt |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40382716 |
taacactccgcttggtgatgtcccagggagtttgaaggttgagctgttgaagagcttgagtagtacactagggactaacataacgagttctacttgtgtt |
40382617 |
T |
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| Q |
519 |
gttactggagctgatatactgaagcagcaaggagtcacacaacttagtaaatggaactgcttgttcatcaccattgctctg |
599 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40382616 |
gttactggagctgatatactgaagcagcaaggagtcacacaacttagtaaatggaactgcttgttcatcaccattgctctg |
40382536 |
T |
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