View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6264_low_52 (Length: 215)
Name: NF6264_low_52
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6264_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 24 - 202
Target Start/End: Complemental strand, 36445494 - 36445318
Alignment:
| Q |
24 |
gacaaaactcaaaactgatcataatgatatctatcttcatgcatcatgcattctctctcagtaatatatttcatgaataaaaataatgttgtgtgttgat |
123 |
Q |
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| T |
36445494 |
gacaaaactcaaaactgatcataatgatatctatcttcatgcaccatgcactctttctcagtaatatatttcatgaataaaaataatgttgtgtgttgat |
36445395 |
T |
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| Q |
124 |
ataatggtgtatttatctatcttgccactatatagtatagatagatatttcatcggtggaaatcatatgtataaatttg |
202 |
Q |
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| T |
36445394 |
ataatggtgtatttatctatcttgccactatatagtatagatagatatttcttcgggagaaatc--atgtataaatttg |
36445318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 24 - 202
Target Start/End: Complemental strand, 36467963 - 36467787
Alignment:
| Q |
24 |
gacaaaactcaaaactgatcataatgatatctatcttcatgcatcatgcattctctctcagtaatatatttcatgaataaaaataatgttgtgtgttgat |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36467963 |
gacaaaactcaaaactgatcataatgatatctatcttcatgcaccatgcactctttctcagtaatatatttcatgaataaaaataatgttgtgtgttgat |
36467864 |
T |
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| Q |
124 |
ataatggtgtatttatctatcttgccactatatagtatagatagatatttcatcggtggaaatcatatgtataaatttg |
202 |
Q |
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| T |
36467863 |
ataatggtgtatttatctatcttgccactatatagtatagatagatatttcttcgggagaaatc--atgtataaatttg |
36467787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 24 - 202
Target Start/End: Complemental strand, 36435594 - 36435418
Alignment:
| Q |
24 |
gacaaaactcaaaactgatcataatgatatctatcttcatgcatcatgcattctctctcagtaatatatttcatgaataaaaataatgttgtgtgttgat |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36435594 |
gacaaaactcaaaactgatcataatgatatctatcttcatgcaccatgtactctttctcagtaatatatttcatgaataaaaataatgttgtgtgttgat |
36435495 |
T |
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| Q |
124 |
ataatggtgtatttatctatcttgccactatatagtatagatagatatttcatcggtggaaatcatatgtataaatttg |
202 |
Q |
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| T |
36435494 |
ataatggtgtatttatctatcttgccactatatagtatagatagatatttcttcgggagaaatc--atgtataaatttg |
36435418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 36411203 - 36411144
Alignment:
| Q |
55 |
tatcttcatgcatcatgcattctctctcagtaatatatttcatgaataaaaataatgttg |
114 |
Q |
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|||| ||||||| ||| || ||| ||| |||||||||||||||||||||||||||||||| |
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| T |
36411203 |
tatcatcatgcaccatacactctttcttagtaatatatttcatgaataaaaataatgttg |
36411144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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