View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6264_low_6 (Length: 569)
Name: NF6264_low_6
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6264_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 508; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 11 - 553
Target Start/End: Complemental strand, 36871582 - 36871039
Alignment:
| Q |
11 |
acatcatcatcgtgctcttgttattggattggttgtagcttcattagtatttgtgtcatttttgttagggttattgtatttttggtatgtttggtgggtg |
110 |
Q |
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| T |
36871582 |
acatcatcatcgtgctcttgttattggattggttgtagcttcattagtatttgtgtcatttttgttagggttattgtatttttggtatgtttggtgggtg |
36871483 |
T |
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| Q |
111 |
aagnnnnnnnncaatgaaaatttgttaccacataatggtggttcacaagagcctagttttagtttaagagttaggcctaaaagtgggttgatttggttta |
210 |
Q |
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| T |
36871482 |
aagaaaaaaaacaatgaaaatttgttaccacataatggtggttcacaagagcctagttttagtttaagagttaggcctaaaagtgggttgatttggttta |
36871383 |
T |
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| Q |
211 |
attttaaggatcttgtgaaggttactgacaacttttcggcccaaaatttcattggaagaggcgggtctggttcggtttacaagggggttttaccggatga |
310 |
Q |
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| T |
36871382 |
attttaaggatcttgtgaaggttactgacaacttttcggcccaaaatttcattggaagaggcgggtctggttcggtttacaagggggttttaccggatga |
36871283 |
T |
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| Q |
311 |
gacgattgttgcggttaaaaggattgaagaatctgattatcaaggagatgttgagttttacagagaggtggggattgttagtagcttgaaacatcgcaat |
410 |
Q |
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| T |
36871282 |
gacgattgttgcggttaaaaggattgaagaatctgattatcaaggagatgttgagttttacagagaggtggggattgttagtagcttgaaacatcgcaat |
36871183 |
T |
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| Q |
411 |
ttggtgccgctaagaggatgttgtgttgttggtgaagatgagaatcctgagtacattggaaagtatcttgtctatgattatatgccgaatggtagtctta |
510 |
Q |
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| T |
36871182 |
ttggtgccgctaagaggatgttgtgttgttggtgaagatgagaatcctgagtactttggaaagtatcttgtctatgattatatgccgaatggtagtctta |
36871083 |
T |
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| Q |
511 |
aagaccatcttttccctgaaatggataacc-aaaatgaaaaaca |
553 |
Q |
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| T |
36871082 |
aagaccatcttttccctgaaatggataaccaaaaatgaaaaaca |
36871039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 285 - 504
Target Start/End: Complemental strand, 36877894 - 36877675
Alignment:
| Q |
285 |
gtttacaagggggttttaccggatgagacgattgttgcggttaaaaggattgaagaatctgattatcaaggagatgttgagttttacagagaggtgggga |
384 |
Q |
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| T |
36877894 |
gtttacaagggcattctacctgatgacacaactgttgctgttaaatgcatggaagaatctgattttcaaggggatgatgagttctataccgaagtggaga |
36877795 |
T |
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| Q |
385 |
ttgttagtagcttgaaacatcgcaatttggtgccgctaagaggatgttgtgttgttggtgaagatgagaatcctgagtacattggaaagtatcttgtcta |
484 |
Q |
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| T |
36877794 |
ttattggcaacttgaaacaccgcaatctagtgccattaagagggtgttgtgtggttgatgacgatcataatcaagagcacaaaaataggtatcttgttta |
36877695 |
T |
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| Q |
485 |
tgattatatgccgaatggta |
504 |
Q |
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| T |
36877694 |
tgattatatgccaaatggta |
36877675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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