View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6264_low_7 (Length: 540)

Name: NF6264_low_7
Description: NF6264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6264_low_7
NF6264_low_7
[»] chr2 (8 HSPs)
chr2 (161-530)||(35275428-35275797)
chr2 (221-525)||(35289545-35289849)
chr2 (197-484)||(35280241-35280528)
chr2 (221-525)||(35307343-35307647)
chr2 (221-525)||(35322344-35322648)
chr2 (202-484)||(35311730-35312014)
chr2 (21-119)||(35275807-35275905)
chr2 (141-170)||(42223029-42223058)
[»] chr5 (2 HSPs)
chr5 (66-118)||(18232084-18232138)
chr5 (141-178)||(17190497-17190534)
[»] chr7 (1 HSPs)
chr7 (66-119)||(9689222-9689275)
[»] chr4 (1 HSPs)
chr4 (66-119)||(13555599-13555652)
[»] chr1 (1 HSPs)
chr1 (89-118)||(44228295-44228324)


Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 161 - 530
Target Start/End: Complemental strand, 35275797 - 35275428
Alignment:
Q  161 atattaaccctatatataaacaatatgtttatcctataaccatgtttcaattaatttatatagcttggaggaccctcatgggcagtaccacttggaagaa 260  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35275797 atattaaccctatatataaacaatatgtgtatcctataaccatgtttcaattaatttatatagcttggaggaccctcatgggcagtaccacttggaagaa 35275698  T
Q  261 gagatgcaagaacagcaagtcaaagtgcagcaaatagccaaattccaggaccatcttctgacctatccacactcactaccatgtttagaaacaaaggtct 360  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||  ||||||  ||||||| ||||    
T  35275697 gagatgcaagaacagcaagtcaaagtgcagcaaatagccaaatccctggaccatcttctgacctatcgacactcactagaatgtttcaaaacaaaagtct 35275598  T
Q  361 aacattaaatgaccttacagtcctatctggtgcacacaccatagggcaaactgagtgtcaatttttcagaaatcgcatacacaatgaagccaacattgac 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35275597 aacattaaatgaccttacagtcctatctggtgcacacaccatagggcaaactgagtgtcaatttttcagaaatcgcatacacaatgaagccaacattgac 35275498  T
Q  461 agaaacttggctaccttaagaaaaagaaattgccctacctctggtggtgacaccaatttagcaccctttg 530  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35275497 agaaacttggctaccttaagaaaaagaaattgccctacctctggtggtgacaccaatttagcaccctttg 35275428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 221 - 525
Target Start/End: Complemental strand, 35289849 - 35289545
Alignment:
Q  221 tagcttggaggaccctcatgggcagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaatagccaaattccaggaccatcttctg 320  Q
    ||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35289849 tagcttggaggtccttcatgggtagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaatagccaaattccaggaccatcttctg 35289750  T
Q  321 acctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgaccttacagtcctatctggtgcacacaccatagggcaaactgagtgtca 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| | || |||||    
T  35289749 acctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgaccttactgtcctttctggtgcacacaccataggtcaagcagaatgtca 35289650  T
Q  421 atttttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctaccttaagaaaaagaaattgccctacctctggtggtgacaccaattta 520  Q
    ||||||||||| ||| ||| |||| ||| |||||||||||| |||||| || ||||||||||||  |||||| ||||| |||||||||||||  |||||     
T  35289649 atttttcagaactcgtatatacaacgaaaccaacattgacacaaactttgcaaccttaagaaaatcaaattgtcctacttctggtggtgacataaatttg 35289550  T
Q  521 gcacc 525  Q
    |||||    
T  35289549 gcacc 35289545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 197 - 484
Target Start/End: Complemental strand, 35280528 - 35280241
Alignment:
Q  197 taaccatgtttcaattaatttatatagcttggaggaccctcatgggcagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaata 296  Q
    ||||| ||||||||||||| ||||||||||||||| || ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  35280528 taaccttgtttcaattaatctatatagcttggaggtccttcatggatagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaaca 35280429  T
Q  297 gccaaattccaggaccatcttctgacctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgaccttacagtcctatctggtgcaca 396  Q
     |||||| ||   |||| ||||||||||||||||||||||||  ||||||  ||||||||||||||||||||  |||||||||||||| |||||||||||    
T  35280428 cccaaatcccttcaccagcttctgacctatccacactcactaaaatgtttcaaaacaaaggtctaacattaagagaccttacagtcctttctggtgcaca 35280329  T
Q  397 caccatagggcaaactgagtgtcaatttttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctaccttaagaaaa 484  Q
    ||||||||| ||| | || |||||||||||| ||||||||||| |||||||| ||||||| |||| |||||| || ||||||||||||    
T  35280328 caccataggccaagcagaatgtcaatttttccgaaatcgcatatacaatgaaaccaacatcgacacaaactttgcaaccttaagaaaa 35280241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 221 - 525
Target Start/End: Complemental strand, 35307647 - 35307343
Alignment:
Q  221 tagcttggaggaccctcatgggcagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaatagccaaattccaggaccatcttctg 320  Q
    ||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||   ||||| |||||    
T  35307647 tagcttggaggaccaacatgggtagtaccacttggaagaagagatgcaagaacagcaagccaaagtgcagcaaatagtcaaatcccttcaccattttctg 35307548  T
Q  321 acctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgaccttacagtcctatctggtgcacacaccatagggcaaactgagtgtca 420  Q
    |||| ||||| |||||||| ||||||  |  ||| ||||||||   || |||||| ||||| || |||||||||||||||||||| |||   ||||| ||    
T  35307547 acctttccactctcactacaatgttttcagccaagggtctaactgcaagtgacctcacagtactttctggtgcacacaccataggccaaggagagtgcca 35307448  T
Q  421 atttttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctaccttaagaaaaagaaattgccctacctctggtggtgacaccaattta 520  Q
    ||||||||||||||||||| |||||||| |||||||||||| |||||| || |||||||| |||  |||||| |||   |||||||||||||||||||||    
T  35307447 atttttcagaaatcgcatatacaatgaaaccaacattgacacaaactttgcaaccttaaggaaatcaaattgtcctctttctggtggtgacaccaattta 35307348  T
Q  521 gcacc 525  Q
    |||||    
T  35307347 gcacc 35307343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 221 - 525
Target Start/End: Complemental strand, 35322648 - 35322344
Alignment:
Q  221 tagcttggaggaccctcatgggcagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaatagccaaattccaggaccatcttctg 320  Q
    ||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||   ||||| |||||    
T  35322648 tagcttggaggaccaacatgggtagtaccacttggaagaagagatgcaagaacagcaagccaaagtgcagcaaatagtcaaatcccttcaccattttctg 35322549  T
Q  321 acctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgaccttacagtcctatctggtgcacacaccatagggcaaactgagtgtca 420  Q
    |||| ||||| ||||| |  ||||||| | |||| ||||||||   || |||||| ||||| || |||||||||||||||||||| |||   ||||| ||    
T  35322548 acctttccactctcaccaaaatgtttacagacaagggtctaactgcaagtgacctcacagtactttctggtgcacacaccataggccaaggagagtgcca 35322449  T
Q  421 atttttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctaccttaagaaaaagaaattgccctacctctggtggtgacaccaattta 520  Q
    ||||||||||||||||||| |||||||| |||||||||||| |||||| || |||||||| |||  |||||| |||   |||||||||||||||||||||    
T  35322448 atttttcagaaatcgcatatacaatgaaaccaacattgacacaaactttgcaaccttaaggaaattaaattgtcctctttctggtggtgacaccaattta 35322349  T
Q  521 gcacc 525  Q
    |||||    
T  35322348 gcacc 35322344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 202 - 484
Target Start/End: Complemental strand, 35312014 - 35311730
Alignment:
Q  202 atgtttcaattaatttatat--agcttggaggaccctcatgggcagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaatagcc 299  Q
    ||||||||||||||| || |  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35312014 atgtttcaattaattaatttgtagcttggaggaccctcatggacagtaccacttggaagaagagatgcaagaacagcaaatcaaagtgcagcaaatagcc 35311915  T
Q  300 aaattccaggaccatcttctgacctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgaccttacagtcctatctggtgcacacac 399  Q
    |||| ||  ||||||| | | ||||| ||| ||||||||| ||||||  |  ||| ||||||||   || ||| || ||||| || ||||||||||||||    
T  35311914 aaatccctagaccatcctttaacctaaccagactcactacaatgtttttagccaagggtctaactgcaagtgatctcacagtactttctggtgcacacac 35311815  T
Q  400 catagggcaaactgagtgtcaatttttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctaccttaagaaaa 484  Q
    |||||| |||   ||||||| ||| ||||||| ||||||| |||||||| |||||||||||| |||||| || ||||||||||||    
T  35311814 cataggccaaggagagtgtcgattgttcagaactcgcatatacaatgaaaccaacattgacacaaacttcgcaaccttaagaaaa 35311730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 35275905 - 35275807
Alignment:
Q  21 ttggtaagtcatatatatgtgtcctataagacatgaaatataaactagggttaatatatgtttaacctctataatattaatggtttctggtttacccct 119  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35275905 ttggtaagtcatatatgtgtgtcctataagacatgaaatataaactagggttaatatatgtttaacctctataatattaatggtttctggtttacccct 35275807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 170
Target Start/End: Complemental strand, 42223058 - 42223029
Alignment:
Q  141 aatattataggggtaaacatatattaaccc 170  Q
    ||||||||||||||||||||||||||||||    
T  42223058 aatattataggggtaaacatatattaaccc 42223029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 18232138 - 18232084
Alignment:
Q  66 tagggttaatatatgtttaacc--tctataatattaatggtttctggtttacccc 118  Q
    ||||||||||||||||||| ||  ||| |||||||| ||||||||||||||||||    
T  18232138 tagggttaatatatgtttaccccctctgtaatattagtggtttctggtttacccc 18232084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 17190534 - 17190497
Alignment:
Q  141 aatattataggggtaaacatatattaaccctatatata 178  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  17190534 aatattataggggtaaacatatattaaacatatatata 17190497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 9689222 - 9689275
Alignment:
Q  66 tagggttaatatatgtttaacctctataatattaatggtttctggtttacccct 119  Q
    ||||||||||||||||||| ||||| ||||||||  | |||| |||||||||||    
T  9689222 tagggttaatatatgtttaccctctgtaatattagcgatttccggtttacccct 9689275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 13555599 - 13555652
Alignment:
Q  66 tagggttaatatatgtttaacctctataatattaatggtttctggtttacccct 119  Q
    ||||||||||||||||||| ||||| ||||||||  | |||| |||||||||||    
T  13555599 tagggttaatatatgtttaccctctgtaatattagcgatttccggtttacccct 13555652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 118
Target Start/End: Original strand, 44228295 - 44228324
Alignment:
Q  89 ctataatattaatggtttctggtttacccc 118  Q
    ||||||||||||||||||||||||||||||    
T  44228295 ctataatattaatggtttctggtttacccc 44228324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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