View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6265_low_2 (Length: 631)

Name: NF6265_low_2
Description: NF6265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6265_low_2
NF6265_low_2
[»] chr2 (12 HSPs)
chr2 (325-616)||(16957927-16958229)
chr2 (11-260)||(23673345-23673588)
chr2 (11-261)||(36326928-36327172)
chr2 (11-261)||(16294900-16295144)
chr2 (11-260)||(32575685-32575930)
chr2 (14-260)||(31528394-31528635)
chr2 (22-260)||(13710084-13710315)
chr2 (11-176)||(40017981-40018140)
chr2 (11-250)||(31626551-31626784)
chr2 (165-260)||(24384925-24385022)
chr2 (151-236)||(29436003-29436088)
chr2 (185-252)||(38315809-38315876)
[»] chr6 (18 HSPs)
chr6 (11-259)||(19664667-19664909)
chr6 (11-260)||(32427303-32427544)
chr6 (11-261)||(1838475-1838721)
chr6 (11-260)||(14790620-14790864)
chr6 (13-255)||(15540574-15540809)
chr6 (11-260)||(14795648-14795892)
chr6 (11-260)||(15535058-15535300)
chr6 (11-261)||(27649104-27649347)
chr6 (11-260)||(13017189-13017433)
chr6 (11-101)||(16883677-16883766)
chr6 (11-81)||(32704428-32704498)
chr6 (11-260)||(22221726-22221967)
chr6 (11-260)||(22247561-22247802)
chr6 (11-90)||(20527329-20527407)
chr6 (151-236)||(11411017-11411102)
chr6 (169-266)||(28974130-28974230)
chr6 (11-47)||(12980700-12980736)
chr6 (11-47)||(12983587-12983623)
[»] chr4 (11 HSPs)
chr4 (11-260)||(26062690-26062937)
chr4 (11-252)||(647211-647447)
chr4 (11-252)||(650483-650719)
chr4 (11-260)||(2541886-2542128)
chr4 (114-260)||(12172071-12172218)
chr4 (151-261)||(15851428-15851538)
chr4 (152-260)||(19929134-19929242)
chr4 (11-47)||(11649441-11649477)
chr4 (177-245)||(21217350-21217418)
chr4 (11-47)||(26060589-26060625)
chr4 (151-260)||(33400075-33400185)
[»] chr5 (14 HSPs)
chr5 (11-261)||(14616428-14616672)
chr5 (11-261)||(7649941-7650185)
chr5 (11-260)||(34405850-34406094)
chr5 (14-260)||(15532200-15532441)
chr5 (11-257)||(33575091-33575331)
chr5 (14-258)||(15542384-15542623)
chr5 (151-260)||(21680612-21680721)
chr5 (11-230)||(22159746-22159961)
chr5 (12-81)||(11989039-11989108)
chr5 (173-260)||(33921372-33921459)
chr5 (151-260)||(2499762-2499872)
chr5 (170-245)||(36330992-36331067)
chr5 (156-260)||(26711464-26711567)
chr5 (156-260)||(26981201-26981304)
[»] chr1 (17 HSPs)
chr1 (11-260)||(13495989-13496232)
chr1 (11-260)||(10764921-10765165)
chr1 (11-260)||(13493264-13493508)
chr1 (11-260)||(32505857-32506098)
chr1 (11-260)||(39546244-39546486)
chr1 (11-260)||(16190179-16190421)
chr1 (11-101)||(34066346-34066435)
chr1 (11-81)||(1936628-1936698)
chr1 (173-260)||(34552438-34552525)
chr1 (159-245)||(15297471-15297557)
chr1 (151-236)||(49716625-49716710)
chr1 (173-236)||(49720129-49720192)
chr1 (11-89)||(27282274-27282351)
chr1 (173-250)||(18392669-18392747)
chr1 (172-252)||(50196723-50196804)
chr1 (11-47)||(22456700-22456736)
chr1 (11-47)||(49147899-49147935)
[»] chr7 (21 HSPs)
chr7 (11-260)||(6967149-6967393)
chr7 (11-260)||(17866353-17866597)
chr7 (11-260)||(24783410-24783654)
chr7 (11-260)||(36842937-36843181)
chr7 (11-260)||(9765803-9766046)
chr7 (149-261)||(17857879-17857992)
chr7 (11-190)||(36222378-36222552)
chr7 (11-203)||(46846368-46846556)
chr7 (11-215)||(33312996-33313195)
chr7 (14-190)||(11279496-11279667)
chr7 (11-101)||(23107989-23108078)
chr7 (11-101)||(23313415-23313504)
chr7 (10-230)||(3861938-3862151)
chr7 (11-81)||(17863268-17863338)
chr7 (11-260)||(23759609-23759852)
chr7 (173-260)||(38431669-38431757)
chr7 (177-251)||(28577687-28577761)
chr7 (11-252)||(294866-295098)
chr7 (150-252)||(3540932-3541034)
chr7 (151-252)||(6964541-6964643)
chr7 (269-297)||(28244189-28244217)
[»] chr3 (12 HSPs)
chr3 (150-260)||(46731589-46731699)
chr3 (11-260)||(13979488-13979730)
chr3 (11-260)||(22626312-22626554)
chr3 (11-260)||(11138570-11138812)
chr3 (169-260)||(26822039-26822130)
chr3 (11-260)||(39563510-39563754)
chr3 (11-74)||(46731496-46731559)
chr3 (173-239)||(27055149-27055215)
chr3 (151-260)||(19869233-19869343)
chr3 (150-204)||(35366510-35366563)
chr3 (151-260)||(20536333-20536445)
chr3 (173-245)||(25492175-25492248)
[»] scaffold0352 (1 HSPs)
scaffold0352 (150-260)||(2619-2728)
[»] chr8 (10 HSPs)
chr8 (19-230)||(12575331-12575535)
chr8 (11-260)||(14418467-14418707)
chr8 (11-91)||(13097022-13097101)
chr8 (151-260)||(39659712-39659821)
chr8 (151-260)||(9467319-9467429)
chr8 (8-69)||(41778927-41778988)
chr8 (173-260)||(453863-453951)
chr8 (11-47)||(41836430-41836466)
chr8 (196-245)||(23644108-23644158)
chr8 (21-74)||(44008307-44008360)
[»] scaffold0440 (1 HSPs)
scaffold0440 (11-190)||(9865-10038)
[»] scaffold0264 (1 HSPs)
scaffold0264 (11-260)||(24185-24426)
[»] scaffold0363 (1 HSPs)
scaffold0363 (11-260)||(11-251)
[»] scaffold0068 (1 HSPs)
scaffold0068 (151-260)||(33730-33839)
[»] scaffold0567 (1 HSPs)
scaffold0567 (11-70)||(5995-6054)
[»] scaffold0273 (1 HSPs)
scaffold0273 (151-252)||(19517-19618)
[»] scaffold0766 (1 HSPs)
scaffold0766 (170-251)||(3661-3739)


Alignment Details
Target: chr2 (Bit Score: 179; Significance: 3e-96; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 325 - 616
Target Start/End: Complemental strand, 16958229 - 16957927
Alignment:
Q  325 aaggttttggtgagcttttgagcggaattgaggatgagataatgctttacttcatggcttacttacccttttactttgcttgatttacaaatgattagtt 424  Q
    ||||||||||||| |||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||    
T  16958229 aaggttttggtgatctttcgagaggaattgaggatgagataatgctttacttgatggcttacttacccttttactttacttgatttacaaatgattaatt 16958130  T
Q  425 ctcccttgtttaaatgttctaagcaagagttatgcataaattaagagagacttctaaacattttaggagagattactacactcttctctcaacaactaat 524  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||| |||||| ||| ||||||||||||| |||||||||||||||||| ||||||    
T  16958129 ctcccttgtttatatgttccaagcaagagttatgcataaattaagagaggcttctacaca-tttaggagagatttctacactcttctctcaactactaat 16958031  T
Q  525 atttaatactatg--tttaaactacttact----------taaaactttc-tttggactaacttcctatttactaattgggtctaacccttgattaattc 611  Q
    |||| ||||||||  |||||||||||||||          |||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||    
T  16958030 attt-atactatgtttttaaactacttacttacacttttctaaaactttcttttggactaactacctatttactaattgggtctaacccttgattagttc 16957932  T
Q  612 aatat 616  Q
    |||||    
T  16957931 aatat 16957927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 23673588 - 23673345
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||    
T  23673588 cataggagaacttcggaggattcgaaggtcttaaccatacatctctctaattttctaaaaccaaactttta-ttgtttttaatccgtttattttacaaat 23673490  T
Q  111 accaatcaactaactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacg 210  Q
     |||||| |   ||||||||||||  |  |   ||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  23673489 gccaatcca---actgcctagggcaaccttg--aatttaatacatcctttttgataaagaaattgttgagtagaaattaacaacggtcctcgtggatacg 23673395  T
Q  211 aatttatttattatttcgatagttttggttcactttccaaatctctatca 260  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  23673394 aatttatttattacttcgatagttttggttcacttgccaaatctctatca 23673345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 36326928 - 36327172
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    |||| ||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||    
T  36326928 catatgagaacttcggaggattcaaaggtcttaaccatacatctctctaattttctaaaaccaaactttta-ttgtttttaatccgtttattttacaaat 36327026  T
Q  111 accaatcaactaactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacg 210  Q
    |||||||   ||||| ||||||||  |  | | ||||  ||||||| ||||||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  36327027 accaatc---taacttcctagggcaac--tttgaatttaatacatcttttttgataaagaaattgcagagtagaagttaacaacggtcctcgtggatacg 36327121  T
Q  211 aatttatttattatttcgatagttttggttcactttccaaatctctatcat 261  Q
    ||||||||||||| ||||||||||||||||||||| |||||| ||||||||    
T  36327122 aatttatttattacttcgatagttttggttcacttgccaaatatctatcat 36327172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 16294900 - 16295144
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    |||||||||||||| ||||||||||||| |||||||| || |||||| |||||||| ||| | ||  |||| |||||||| ||| ||||||  || |||     
T  16294900 cataggagaacttcggaggattcgaaggacttaaccatacttctctc-aattttctgaaaactaatctttatttgtttttaatcggtttatgatacaaa- 16294997  T
Q  111 accaatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatac 209  Q
        ||||||| |||||||||||||  ||||||||||| ||||||||||||  ||||| ||||||||||||||||||||||||||||||||||| |||      
T  16294998 ----atcaactcaactgcctagggcatcaatataaattttatacatcctttc-gataacgaaattgctgagtagaaattaacaacggtcctcgtggattt 16295092  T
Q  210 gaatttatttattatttcgatagttttggttcactttccaaatctctatcat 261  Q
    ||  |||||||||| ||||||||||||||||||||| |||||||||||||||    
T  16295093 gatcttatttattacttcgatagttttggttcacttgccaaatctctatcat 16295144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 32575930 - 32575685
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatct--ctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaa 108  Q
    ||||||||| |||| |||||||||||||||||||||| || |||  ||||||| |||| ||| | |||||||| ||||||| | | |||||| |||| ||    
T  32575930 cataggagagcttcggaggattcgaaggtcttaaccatacttctttctctaatattcttaaaaccaactttta-ttgttttatttacgtttactttataa 32575832  T
Q  109 ataccaatcaactaactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgata 208  Q
    | || |||| |   |||||||||||   |||| | ||||  ||||||| ||| | |||| ||||| | ||||||||| ||||||||||||||||| ||||    
T  32575831 aaac-aatcca---actgcctagggtaacaat-tgaatttaatacatcatttattataacgaaatcgttgagtagaagttaacaacggtcctcgtggata 32575737  T
Q  209 cgaatttatttattatttcgatagttttggttcactttccaaatctctatca 260  Q
    ||||||||||||||| ||| ||||| ||||||||||| |||||| |||||||    
T  32575736 cgaatttatttattacttcaatagtgttggttcacttgccaaatatctatca 32575685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 14 - 260
Target Start/End: Original strand, 31528394 - 31528635
Alignment:
Q  14 aggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttct-aaaaccaaacttttaattgttttttatccgtttattttagaaatac 112  Q
    |||||| ||| |||||||||||||| |||||||| || |||||| |||||||| |||| | || | || ||||||||| ||| |||||| |||  ||       
T  31528394 aggagagctttagaggattcgaaggacttaaccatacttctctc-aattttcttaaaaaccaattctttattgtttttaatcagtttatgttactaa--- 31528489  T
Q  113 caatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacga 211  Q
      ||||||| ||||||||||||| |||||||||||| |||||||||||||| |||| ||||||||| ||||||| ||||  || |||||||| || || |    
T  31528490 --atcaactcaactgcctagggcaccaatataaatt-tatacatcctttttaataatgaaattgctaagtagaagttaaatacagtcctcgtggaaacaa 31528586  T
Q  212 atttatttattatttcgatag-ttttggttcactttccaaatctctatca 260  Q
    |||| ||||||| |||||| |  |||||||||||| |||||| |||||||    
T  31528587 attt-tttattacttcgatcgaatttggttcacttgccaaatatctatca 31528635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 22 - 260
Target Start/End: Original strand, 13710084 - 13710315
Alignment:
Q  22 ttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaataccaatcaact 121  Q
    |||||| |||| |||||||||||||| || |||||| |||||||||||||||| ||||| ||||||||| |||||||||| |      ||| | ||||||    
T  13710084 ttcagatgatttgaaggtcttaaccatacttctctcaaattttctaaaaccaatctttt-attgtttttaatccgtttatgt------tacaactcaact 13710176  T
Q  122 -aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacgaatttattta 220  Q
     |||| |||  |||  ||||||||||| |||||||||||||| |||| ||||||||| ||||||| ||||  || || |||||  | |||||||  ||||    
T  13710177 caacttcctcaggcatcaatataaattttatacatcctttttaataatgaaattgctaagtagaagttaaatacagttctcgtaaaaacgaatt--ttta 13710274  T
Q  221 ttatttcgatag-ttttggttcactttccaaatctctatca 260  Q
    ||| |||||| |  |||||||||||| |||||| |||||||    
T  13710275 ttacttcgattgaatttggttcacttgccaaatatctatca 13710315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 40017981 - 40018140
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    |||||||||  ||| |||||||||||||||||||||| || |||||| | |||||| ||||||  || || ||||||||| |||||||||| |      |    
T  40017981 cataggagagtttcggaggattcgaaggtcttaaccatacttctctcaatttttcttaaaccagtctctt-attgtttttaatccgtttatgt------t 40018073  T
Q  111 accaatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgc 176  Q
    || |||||||| |||||||||||||  ||||||||||| |||||||||||||| ||||| |||||||    
T  40018074 acaaatcaactcaactgcctagggcatcaatataaattttatacatcctttttaataaaaaaattgc 40018140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 31626551 - 31626784
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttat-ccgtttattttagaaa 109  Q
    ||||||||| |||| ||||||||||| | ||||||||  | ||||||  ||||||||||||||| | |||| || ||||| || || ||||| ||| |||    
T  31626551 cataggagagcttcggaggattcgaatgacttaaccattcttctctcagattttctaaaaccaatccttta-ttatttttaattccttttatgttacaaa 31626649  T
Q  110 taccaatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgata 208  Q
         ||||||| ||||||||||||| |||||||||||| || ||||||||||| |||| ||||||||| ||||||| ||||  || |||||| |||| |    
T  31626650 -----atcaactcaactgcctagggcaccaatataaattttacacatcctttttaataatgaaattgctaagtagaagttaa-tacagtcctcattgaaa 31626743  T
Q  209 cgaatttatttattatttcgatag-ttttggttcactttccaa 250  Q
    ||||||  ||||||| |||||| |  |||||||||||| ||||    
T  31626744 cgaatt--tttattacttcgattgaatttggttcacttaccaa 31626784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 165 - 260
Target Start/End: Complemental strand, 24385022 - 24384925
Alignment:
Q  165 taaagaaattgctgagtagaaattaacaacggtcctcgttgatacgaattta--tttattatttcgatagttttggttcactttccaaatctctatca 260  Q
    ||||||||||||| |||||||||||| ||| ||| ||||  |||||||||||  ||||||| ||||||||||||||| ||||| |||||| |||||||    
T  24385022 taaagaaattgctaagtagaaattaataacagtcatcgtgaatacgaatttaattttattacttcgatagttttggtacacttgccaaatatctatca 24384925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 29436003 - 29436088
Alignment:
Q  151 tacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatagtttt 236  Q
    |||||||||| |  ||| ||| ||||| ||||||||||||||||||||||||| |||||||| ||  |||||| ||||||||||||    
T  29436003 tacatcctttattttaacgaacttgctaagtagaaattaacaacggtcctcgtggatacgaactttattattacttcgatagtttt 29436088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 38315876 - 38315809
Alignment:
Q  185 aattaacaacggtcctcgttgatacgaatttatttattatttcgatagttttggttcactttccaaat 252  Q
    ||||||||||||||||||| |||||||| ||  ||| || ||||||||||||| | ||||| ||||||    
T  38315876 aattaacaacggtcctcgtggatacgaactttattactacttcgatagttttgatacacttaccaaat 38315809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 1e-70; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 11 - 259
Target Start/End: Complemental strand, 19664909 - 19664667
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||    
T  19664909 cataggagaacttcggaggattcgaaggtcttaaccatacatctctctaattttcttaaaccaaactttta-ttgtttttaatccgtttattttacaaat 19664811  T
Q  111 accaatcaactaactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacg 210  Q
    ||||||| |   ||||||||||||  |  |   ||||  |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||     
T  19664810 accaatcca---actgcctagggcaaccttg--aatttaatacatcctttttgataaagaaattgttgagtagaaataaacaacggtcctcgtggataca 19664716  T
Q  211 aatttatttattatttcgatagttttggttcactttccaaatctctatc 259  Q
    ||||||||||||| ||||||||||||||||||||| |||||||| ||||    
T  19664715 aatttatttattacttcgatagttttggttcacttgccaaatctttatc 19664667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 32427303 - 32427544
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    ||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||| | |||||||| || ||||||||||| ||||    
T  32427303 cataggagaacttcagaggattcaaaggtcttaatcaaacatctctctaattttctaaaaccaaactttca-ttgtttttaattcgtttattttacaaat 32427401  T
Q  111 accaatcaactaactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacg 210  Q
    ||||||| |   ||||| ||||||  |  |   ||||  ||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||     
T  32427402 accaatcca---actgc-tagggcaaccttg--aatttaatacatcttttttgataaagaaattgctgagtagaa-ttaacaacggtcctcgtagataca 32427494  T
Q  211 aatttatttattatttcgatagttttggttcactttccaaatctctatca 260  Q
    ||||||||||||| ||||||||||||||||||||| |||||| |||||||    
T  32427495 aatttatttattacttcgatagttttggttcacttaccaaatatctatca 32427544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 1838475 - 1838721
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    |||||||||||||| |||||||||||||||||||||| || |||||||||| |||| ||| | |||||||| |  ||| |||  |||||| |||| |||     
T  1838475 cataggagaacttcggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattcttttatta--cgtttactttataaaa 1838572  T
Q  111 accaatcaactaactgcctagggcgc--caatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgata 208  Q
    ||||||| |   |||| |||||      ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||    
T  1838573 accaatcca---actgtctaggaaaaatcaatataaatt-tatacatcctttttgataaagaaattgccgagtagaaattaacaacggtccttgtggata 1838668  T
Q  209 cgaatttatttattatttcgatagttttggttcactttccaaatctctatcat 261  Q
    ||||||||||||||| ||||||| ||||||||||||| |||||||||||||||    
T  1838669 cgaatttatttattacttcgataattttggttcacttgccaaatctctatcat 1838721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 14790620 - 14790864
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||| |||| ||| | |||||||| ||||||| | | ||||||| ||| |||     
T  14790620 cataggagaacttcagaggattcgaaggtcttaaccatacttctctctaatattctgaaaaccaactttta-ttgttttatttacgtttatgttacaaa- 14790717  T
Q  111 accaatcaactaactgcctagggcgc-caatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatac 209  Q
    || | ||||||    |||||||||   ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  14790718 acaactcaact----gcctagggcaatcaatataaatt-tatacatcctttttgataaagaaattgccgagtagaaattaacaacggtcctcgtggatac 14790812  T
Q  210 gaatttatttattatttcgatag-ttttggttcactttccaaatctctatca 260  Q
    ||| ||  ||| || |||||||| ||||||| ||||| |||||| |||||||    
T  14790813 gaactttattactacttcgatagcttttggtacacttgccaaatatctatca 14790864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 15540574 - 15540809
Alignment:
Q  13 taggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaatac 112  Q
    |||||||||||| |||||||||||||||||||||| | |||||| |||||||||||||| ||||||||| |||||||| |||| |||||||||||||       
T  15540574 taggagaacttcggaggattcgaaggtcttaaccataaatctctttaattttctaaaactaaactttta-ttgtttttaatccctttattttagaaa--- 15540669  T
Q  113 caatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacga 211  Q
      ||||||| ||||||||||||   |  |   ||||  ||||||||||||||||| |||||||||||||||||| ||||||| |||||   | | ||| |    
T  15540670 --atcaactcaactgcctagggaaaccttg--aatttaatacatcctttttgatatagaaattgctgagtagaagttaacaatggtccgattggttacaa 15540765  T
Q  212 atttatttattatttcgatagttttggttcactttccaaatctc 255  Q
    |||||||||||| ||||||||||||||||||||| |||||||||    
T  15540766 atttatttattacttcgatagttttggttcacttgccaaatctc 15540809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 14795648 - 14795892
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||| |||| ||| | |||||||| ||||||| | | ||||||| ||| |||     
T  14795648 cataggagaacttcagaggattcgaaggtcttaaccatacttctctctaatattctgaaaaccaactttta-ttgttttatttacgtttatgttacaaa- 14795745  T
Q  111 accaatcaactaactgcctagggcgc-caatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatac 209  Q
    || | ||||||    |||||||||   ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||    
T  14795746 acaactcaact----gcctagggcaatcaatataaatt-tatacatcctttttgataaagaaattgccgagtagaaattaacaacggtcctcgtaggtac 14795840  T
Q  210 gaatttatttattatttcgatag-ttttggttcactttccaaatctctatca 260  Q
    ||| ||  ||| || |||||||| ||||||| ||||| |||||| |||||||    
T  14795841 gaactttattactacttcgatagcttttggtacacttgccaaatatctatca 14795892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 15535058 - 15535300
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    ||||||| |||||| ||||||| |||||||||||||| ||||| || ||||||| |||||||||||||||| |||||||| |||  ||| ||||| |||     
T  15535058 cataggaaaacttcggaggatttgaaggtcttaaccatacatcactttaattttgtaaaaccaaactttta-ttgtttttaatctatttgttttacaaa- 15535155  T
Q  111 accaatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatac 209  Q
        ||||||| |||||||||||||  |  |   ||||  ||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| |||||    
T  15535156 ----atcaactcaactgcctagggcaaccttg--aatttaatacatccttttttataaagaaatggctgagtagaagttaacaacggtcctcgtggatac 15535249  T
Q  210 gaatttatttattatttcgatagttttggttcactttccaaatctctatca 260  Q
    |||||||||||||| ||||||| ||||||||||| | | ||||||| ||||    
T  15535250 gaatttatttattacttcgataattttggttcacatgcgaaatctccatca 15535300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 27649104 - 27649347
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    |||||||||||||| |||||||||||||||||||||| || || |||||||||||| ||| | |||||||| ||||||  | | ||||||| ||| |||     
T  27649104 cataggagaacttcggaggattcgaaggtcttaaccatacttcgctctaattttcttaaaaccaactttta-ttgtttcatctacgtttatgttataaaa 27649202  T
Q  111 accaatcaactaactgcctagggcg-ccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatac 209  Q
    ||||||| |   ||||||||||||| ||||   |||||  || ||||||||  || |||||||||||||||||| ||||||||||||||||||| ||| |    
T  27649203 accaatcca---actgcctagggcgaccaa---aaatttaatgcatcctttc-gagaaagaaattgctgagtaggaattaacaacggtcctcgtggattc 27649295  T
Q  210 gaatttatttattatttcgatagttttggttcactttccaaatctctatcat 261  Q
    ||  |||||||||| |||||||||||| |||||||| |||||||||||||||    
T  27649296 gatcttatttattacttcgatagttttagttcacttgccaaatctctatcat 27649347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 13017433 - 13017189
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttct-aaaaccaaacttttaattgttttttatccgtttattttagaaa 109  Q
    ||||||||| |||  ||||||||||||| |||||||| || |||||| |||||||| |||| | || | || ||||||||| ||| |||||| |||  ||    
T  13017433 cataggagagctttggaggattcgaaggacttaaccatacttctctc-aattttctgaaaaaccaattctttattgtttttaatcagtttatgttactaa 13017335  T
Q  110 taccaatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgata 208  Q
         ||||||| ||||||||||||| |||||||||||| |||||||||||||| |||| ||||||||| ||||||| ||||  |  |||||||| || |    
T  13017334 -----atcaactcaactgcctagggcaccaatataaatt-tatacatcctttttaataatgaaattgctaagtagaagttaaatatagtcctcgtggaaa 13017241  T
Q  209 cgaatttatttattatttcgatag-ttttggttcactttccaaatctctatca 260  Q
    |||| || ||||||| |||||| |  |||||||||||| |||||| |||||||    
T  13017240 cgaactt-tttattacttcgatcgaatttggttcacttgccaaatatctatca 13017189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 16883677 - 16883766
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttat 101  Q
    ||||||||||||||  |||||||||| |||||||||| || ||||||||||||||||||||||| ||||| ||||||||| || |||||||    
T  16883677 cataggagaacttcgaaggattcgaatgtcttaaccatacttctctctaattttctaaaaccaatctttt-attgtttttaattcgtttat 16883766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 32704498 - 32704428
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaactttta 81  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||| |||| ||| | ||||||||    
T  32704498 cataggagaacttcagaggattcgaaggtcttaaccatacttctctctaatattctgaaaaccaactttta 32704428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 22221726 - 22221967
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    ||||||||| |||| ||||||||||||| ||||||||  | |||||| |||||||||||| | || | || ||||||||| ||  |||||||     | |    
T  22221726 cataggagagcttcggaggattcgaaggacttaaccatgcttctctc-aattttctaaaaaccaattctttattgtttttaattagtttatt-----act 22221819  T
Q  111 accaatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatac 209  Q
    |  |||||||| ||||||||||||| ||||||  |||| |||||||||||||| |||| ||||||||| |||||||  |||  |  |||||||| || ||    
T  22221820 a--aatcaactcaactgcctagggcaccaataataatt-tatacatcctttttaataatgaaattgcttagtagaagctaaatatagtcctcgtggaaac 22221916  T
Q  210 gaatttatttattatttcgatag-ttttggttcactttccaaatctctatca 260  Q
    ||||||| ||| || |||||||| ||||||| ||||| |||||| |||||||    
T  22221917 gaattta-ttactacttcgatagcttttggtacacttgccaaatttctatca 22221967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 22247561 - 22247802
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    ||||||||| |||| ||||||||||||| ||||||||  | |||||| |||||||||||| | || | || ||||||||| ||  |||||||     | |    
T  22247561 cataggagagcttcggaggattcgaaggacttaaccatgcttctctc-aattttctaaaaaccaattctttattgtttttaattagtttatt-----act 22247654  T
Q  111 accaatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatac 209  Q
    |  |||||||| ||||||||||||| ||||||  |||| |||||||||||||| |||| ||||||||| |||||||  |||  |  |||||||| || ||    
T  22247655 a--aatcaactcaactgcctagggcaccaataataatt-tatacatcctttttaataatgaaattgcttagtagaagctaaatatagtcctcgtggaaac 22247751  T
Q  210 gaatttatttattatttcgatag-ttttggttcactttccaaatctctatca 260  Q
    ||||||| ||| || |||||||| ||||||| ||||| |||||| |||||||    
T  22247752 gaattta-ttactacttcgatagcttttggtacacttgccaaatttctatca 22247802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 20527407 - 20527329
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttt 90  Q
    |||||||||||||| |||||||||||||||||||||| || |||||||||| |||| ||| | ||||||| |||||||||    
T  20527407 cataggagaacttcggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaactttt-attgttttt 20527329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 11411017 - 11411102
Alignment:
Q  151 tacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatagtttt 236  Q
    |||||||||| |  ||| ||| ||||| ||||||||||||||| ||| ||||| |||||||| ||  |||||| ||||||||||||    
T  11411017 tacatcctttattttaacgaacttgctaagtagaaattaacaatggtactcgtggatacgaactttattattacttcgatagtttt 11411102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 28974230 - 28974130
Alignment:
Q  169 gaaattgctgagtagaaattaacaacggtcctcgttgatacgaatttatt--tattatttcgatagttttgg-ttcactttccaaatctctatcataagc 265  Q
    ||||||||| ||| || |||||||||  ||||||| |||||  |||||||  ||||| |||||||||||||| | ||||| |||||| ||||||| ||||    
T  28974230 gaaattgctaagttgacattaacaacaatcctcgtggatacagatttattattattacttcgatagttttggatacacttgccaaatatctatcacaagc 28974131  T
Q  266 t 266  Q
    |    
T  28974130 t 28974130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 12980736 - 12980700
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaacca 47  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  12980736 cataggagaacttcggaggattcgaaggtcttgacca 12980700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 12983623 - 12983587
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaacca 47  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  12983623 cataggagaacttcggaggattcgaaggtcttgacca 12983587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 7e-63; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 26062937 - 26062690
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctct--aattttctaaaaccaaacttttaattgttttttatccgtttattttagaa 108  Q
    |||||||||||||| |||||||| ||||||||||||| ||||||||||  ||||||||||||||||||||||| |||||||| |||||||||||||| ||    
T  26062937 cataggagaacttcggaggattcaaaggtcttaaccatacatctctctctaattttctaaaaccaaactttta-ttgtttttaatccgtttattttacaa 26062839  T
Q  109 ataccaatcaactaactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacgg--tcctcgttga 206  Q
    ||||||||| |   ||| ||||||||  |  |   ||||  |||||||||||||||||||||||||| ||||||||| ||||||||||  ||||||| ||    
T  26062838 ataccaatcca---actacctagggcaaccttg--aatttaatacatcctttttgataaagaaattgttgagtagaagttaacaacggggtcctcgtgga 26062744  T
Q  207 tacgaatttatttattatttcgatagttttggttcactttccaaatctctatca 260  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  26062743 tacgaatttatttattatttcgatagttttggttcacttgccaaatctttatca 26062690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 647447 - 647211
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    ||||||||||||||||||||||||||| ||||||||| || |||||||||| |||| ||| | |||||||| ||||||| | | ||||||| ||| |||     
T  647447 cataggagaacttcagaggattcgaagatcttaaccatacttctctctaatattctgaaaaccaactttta-ttgttttatttacgtttatgttacaaa- 647350  T
Q  111 accaatcaactaactgcctagggcgc-caatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatac 209  Q
    || | |||| |    |||||||||   ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  647349 acaactcaaat----gcctagggcaatcaatataaatt-tatacatcctttttgataaagaaattgccgagtagaaattaacaacggtcctcgtggatac 647255  T
Q  210 gaatttatttattatttcgatag-ttttggttcactttccaaat 252  Q
     || ||  ||| || |||||||| ||||||| ||||| ||||||    
T  647254 aaactttattactacttcgatagcttttggtacacttgccaaat 647211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 650719 - 650483
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||| || | ||| | |||||||| ||||||| | | ||||||| ||| |||     
T  650719 cataggagaacttcagaggattcgaaggtcttaaccatacttctctctaatattatgaaaaccaactttta-ttgttttatttacgtttatgttacaaa- 650622  T
Q  111 accaatcaactaactgcctagggcgc-caatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatac 209  Q
    || | |||| |    |||||||||   ||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||    
T  650621 acaactcaaat----gcctagggcaatcaatataaatt-tatacatcctttttgatatagaaattgccgagtagaaattaacaacggtcctcgtggatac 650527  T
Q  210 gaatttatttattatttcgatag-ttttggttcactttccaaat 252  Q
     || ||  ||| || |||||||| ||||||| ||||| ||||||    
T  650526 aaactttattactacttcgatagcttttggtacacttgccaaat 650483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 2541886 - 2542128
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    |||| |||||||||||||||||||||||||||||||| ||  |||| |||||||| |||| |  |  ||| ||||||||| |||||||||| ||| ||      
T  2541886 cataagagaacttcagaggattcgaaggtcttaaccatac--ctctttaattttcaaaaaacctatattttattgtttttaatccgtttatgttacaag- 2541982  T
Q  111 accaatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatac 209  Q
       ||| |||| ||||||||||||| ||| |   ||||  ||||||||||||| |||| ||||||||| ||||||| ||||  || |||||||| |||||    
T  2541983 ---aataaactcaactgcctagggcaccattg--aatttaatacatcctttttaataatgaaattgctcagtagaagttaaatacagtcctcgtggatac 2542077  T
Q  210 gaatttatttattatttcgatag-ttttggttcactttccaaatctctatca 260  Q
    ||| |||||||||| |||||| |  |||||| ||||| |||||| |||||||    
T  2542078 gaa-ttatttattacttcgattgactttggtacacttgccaaatatctatca 2542128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 114 - 260
Target Start/End: Original strand, 12172071 - 12172218
Alignment:
Q  114 aatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacgaa 212  Q
    |||||||| ||||||||||||| |||||||||||| |||||||||||||| |||| ||||||||| ||||||| ||||  || |||||||| || ||||     
T  12172071 aatcaactcaactgcctagggcaccaatataaatt-tatacatcctttttaataatgaaattgctaagtagaagttaaatacagtcctcgtggaaacgat 12172169  T
Q  213 tttatttattatttcgatag-ttttggttcactttccaaatctctatca 260  Q
     || ||||||| |||||| |  |||||||||||| |||||| |||||||    
T  12172170 cttttttattacttcgatcgaatttggttcacttgccaaatatctatca 12172218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 151 - 261
Target Start/End: Original strand, 15851428 - 15851538
Alignment:
Q  151 tacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatagttttggttcactttccaa 250  Q
    |||||||||| |  ||| ||| ||||| ||||||||||||||||||||||||| |||||||| ||   ||||| ||||||||||||||| ||||| ||||    
T  15851428 tacatcctttattttaacgaacttgctaagtagaaattaacaacggtcctcgtggatacgaactttactattacttcgatagttttggtacacttgccaa 15851527  T
Q  251 atctctatcat 261  Q
    |||| ||||||    
T  15851528 atctttatcat 15851538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 260
Target Start/End: Original strand, 19929134 - 19929242
Alignment:
Q  152 acatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacga-atttatttattatttcgatagtt-ttggttcactttcca 249  Q
    ||||||||| ||  |||||| ||||| ||||||||||||||||||||||||| || |||| ||||| ||| || |||||||||| ||||| ||||| |||    
T  19929134 acatcctttatgtcaaagaacttgctaagtagaaattaacaacggtcctcgtgga-acgatattta-ttactacttcgatagttattggtacacttgcca 19929231  T
Q  250 aatctctatca 260  Q
    ||| |||||||    
T  19929232 aatatctatca 19929242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 11649477 - 11649441
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaacca 47  Q
    |||||||||||||| ||||||||||||||||||||||    
T  11649477 cataggagaacttcggaggattcgaaggtcttaacca 11649441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 21217418 - 21217350
Alignment:
Q  177 tgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatagttttggttcactt 245  Q
    |||||||||||||| ||||||||||||  ||||||||||  |||||| || ||||||||| || |||||    
T  21217418 tgagtagaaattaataacggtcctcgtgaatacgaattttattattactttgatagttttagtacactt 21217350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 26060589 - 26060625
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaacca 47  Q
    |||||||||||||| ||||||||||||||||||||||    
T  26060589 cataggagaacttcggaggattcgaaggtcttaacca 26060625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 33400185 - 33400075
Alignment:
Q  151 tacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatag-ttttggttcactttcca 249  Q
    |||||||||| |  ||| ||| ||||| || |||||||||||||||| ||||| |||||||| ||  ||| ||  ||||||| ||||||| ||||| |||    
T  33400185 tacatcctttattttaacgaacttgctaagcagaaattaacaacggttctcgtggatacgaactttattactacctcgatagcttttggtacacttgcca 33400086  T
Q  250 aatctctatca 260  Q
    ||| |||||||    
T  33400085 aatatctatca 33400075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 3e-53; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 14616672 - 14616428
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    |||||||||||||| |||||||| ||||||||||||| || |||||||||| |||| |||   |||||||| ||||||| | | ||||||| ||| |||     
T  14616672 cataggagaacttcggaggattcaaaggtcttaaccatacttctctctaatattcttaaaatcaactttta-ttgttttatttacgtttatgttacaaa- 14616575  T
Q  111 accaatcaactaactgcctagggcgc-caatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatac 209  Q
    || | ||||||     |||||||    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  14616574 acaactcaactt----cctagggtaatcaatataaattc-atacatcctttttgataaagaaattgccgagtagaaattaacaacggtcctcgtggatac 14616480  T
Q  210 gaatttatttattatttcgatagttttggttcactttccaaatctctatcat 261  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  14616479 gaatttatttattacttcgatagttttggttcacttgccaaatctctatcat 14616428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 7650185 - 7649941
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    ||||| ||||||||  ||||||| || |||||||||| || |||||||||| |||| |||   |||||||| ||||||| | | ||||||| ||| |||     
T  7650185 catagaagaacttcgtaggattcaaatgtcttaaccatacttctctctaatattcttaaaagcaactttta-ttgttttatttacgtttatgttacaaa- 7650088  T
Q  111 accaatcaactaactgcctagggcgc-caatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatac 209  Q
    || | ||||||    |||||||||   ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||    
T  7650087 acaactcaact----gcctagggcaatcaatataaatt-tatacatcctttttgataaagaaattgttgagtagaaattaacaacggtcctcgtgaatac 7649993  T
Q  210 gaatttatttattatttcgatagttttggttcactttccaaatctctatcat 261  Q
    |||||||||||||| |||||||||||||||||||||  ||||||||||||||    
T  7649992 gaatttatttattacttcgatagttttggttcacttgtcaaatctctatcat 7649941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 34405850 - 34406094
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    |||||||||||||||||||||| |||||||||||||| || |||||||||| |||| ||| | |||||||| ||||||| | | ||||||| ||| |       
T  34405850 cataggagaacttcagaggatttgaaggtcttaaccatacttctctctaatattctgaaaaccaactttta-ttgttttatttacgtttatgttaca--- 34405945  T
Q  111 accaatcaact-aactgcctagggcgc-caatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgata 208  Q
      ||| ||||| |||||||||||||   ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||    
T  34405946 --caa-caactcaactgcctagggcaatcaatataaatt-tatacatcctttttgataaagaaattgccgagtagaaattaacaacggtccttgtggata 34406041  T
Q  209 cgaatttatttattatttcgatag-ttttggttcactttccaaatctctatca 260  Q
    |||| ||  ||| || |||||||| ||||||| ||||| |||||| |||||||    
T  34406042 cgaactttattactacttcgatagcttttggtacacttgccaaatatctatca 34406094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 15532441 - 15532200
Alignment:
Q  14 aggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttct-aaaaccaaacttttaattgttttttatccgtttattttagaaatac 112  Q
    |||||| ||| |||||||||||||| |||||||| || |||||| |||||||| |||| | || | || ||||||||| ||| |||||| |||  ||       
T  15532441 aggagagctttagaggattcgaaggacttaaccatacttctctc-aattttcttaaaaaccaattctttattgtttttaatcagtttatgttactaa--- 15532346  T
Q  113 caatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacga 211  Q
      ||||||| ||||||||||||| |||||||||||| |||||||||||||| |||| ||||||||| ||||||| ||||  || |||||||| || ||||    
T  15532345 --atcaactcaactgcctagggcaccaatataaatt-tatacatcctttttaataatgaaattgctaagtagaagttaaatacagtcctcgtggaaacga 15532249  T
Q  212 atttatttattatttcgatag-ttttggttcactttccaaatctctatca 260  Q
    |||| ||||||| |||||| |  |||||||||| | |||||| |||||||    
T  15532248 attt-tttattacttcgatcgaatttggttcacatgccaaatatctatca 15532200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 33575091 - 33575331
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    ||||||||| |||| ||||||||||||| |||||||| || |||||| |||||||||||| | || | || ||||||||| ||| |||||| |||  ||     
T  33575091 cataggagagcttcggaggattcgaaggacttaaccatacttctctc-aattttctaaaaaccaattctttattgtttttaatcagtttatgttactaa- 33575188  T
Q  111 accaatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatac 209  Q
        ||||||| ||||||||||||| |||||||||||| |||||||||||||| ||||  |||||||| | ||||| ||||  || ||||||||  | ||    
T  33575189 ----atcaactcaactgcctagggcaccaatataaatt-tatacatcctttttaataataaaattgctaaatagaagttaaatacagtcctcgtgaaaac 33575283  T
Q  210 gaatttatttattatttcgatag-ttttggttcactttccaaatctcta 257  Q
    |||||| ||||||| |||||| |  |||||||||||| |||||| ||||    
T  33575284 gaattt-tttattacttcgattgaatttggttcacttgccaaatttcta 33575331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 15542623 - 15542384
Alignment:
Q  14 aggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttct-aaaaccaaacttttaattgttttttatccgtttattttagaaatac 112  Q
    |||||| ||| |||||||||||||| |||||||| || |||||| |||||||| |||| | || | || ||||||||| ||| |||||| |||  ||       
T  15542623 aggagagctttagaggattcgaaggacttaaccatacttctctc-aattttcttaaaaaccaattctttattgtttttaatcagtttatgttactaa--- 15542528  T
Q  113 caatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacga 211  Q
      ||||||| ||||||||||||| |||||||||||| |||||||||||||| |||| ||||||| | ||||||| ||||  || |||||||| || ||||    
T  15542527 --atcaactcaactgcctagggcaccaatataaatt-tatacatcctttttaataatgaaattgttaagtagaagttaaatacagtcctcgtggaaacga 15542431  T
Q  212 atttatttattatttcgatag-ttttggttcactttccaaatctctat 258  Q
    |||| ||||||| |||||| |  |||||||||||| |||||| |||||    
T  15542430 attt-tttattacttcgatcgaatttggttcacttgccaaatatctat 15542384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 151 - 260
Target Start/End: Original strand, 21680612 - 21680721
Alignment:
Q  151 tacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatagttttggttcactttccaa 250  Q
    |||||||||| |  ||| ||| ||||| ||||||||||||||||||||||||| ||||| || ||  ||| || ||||||||||||||| ||||| ||||    
T  21680612 tacatcctttattttaacgaacttgctaagtagaaattaacaacggtcctcgtggatacaaactttattactacttcgatagttttggtacacttgccaa 21680711  T
Q  251 atctctatca 260  Q
    || |||||||    
T  21680712 atatctatca 21680721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 22159746 - 22159961
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttc-taaaaccaaacttttaattgttttttatccgtttattttagaaa 109  Q
    |||||||||||||| |||||||| ||||||||||||| |  |||||||||| ||| |||||||||  |||| |||||||| | | |||||| |||| |||    
T  22159746 cataggagaacttcggaggattcaaaggtcttaaccatatttctctctaatattcttaaaaccaa--tttttattgttttatttacgtttactttataaa 22159843  T
Q  110 taccaatcaactaactgcctagggcgccaatataaatt-ctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgata 208  Q
     ||||||   | |||||||||||||  |  |  || ||  |||||||||||||||| |||||||||||| ||||||| ||||  || |||||||| || |    
T  22159844 aaccaat---ccaactgcctagggcaacctttgaatttaatatacatcctttttgacaaagaaattgctaagtagaagttaaatacagtcctcgtggaaa 22159940  T
Q  209 cgaatttatttattatttcgat 230  Q
    | ||||| ||||||| ||||||    
T  22159941 caaattt-tttattacttcgat 22159961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 11989108 - 11989039
Alignment:
Q  12 ataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaactttta 81  Q
    ||||||||||||  |||||||||||||||||||||  || ||||||||||||||||||| ||| ||||||    
T  11989108 ataggagaactttggaggattcgaaggtcttaaccttacttctctctaattttctaaaatcaatctttta 11989039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 260
Target Start/End: Original strand, 33921372 - 33921459
Alignment:
Q  173 ttgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatagttttggttcactttccaaatctctatca 260  Q
    ||||| |||||||||| |||||||||||||| |||||||| ||  ||| || ||||||||||||||| ||||| || ||| |||||||    
T  33921372 ttgctaagtagaaattcacaacggtcctcgtggatacgaactttattactacttcgatagttttggtacacttgccgaatatctatca 33921459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 2499872 - 2499762
Alignment:
Q  151 tacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgata-gttttggttcactttcca 249  Q
    |||||||||| |  ||| ||| ||||| ||||||||||||||||||||||||| |||||||| ||  ||| || |||||||  ||||||| ||||| |||    
T  2499872 tacatcctttattttaacgaacttgctaagtagaaattaacaacggtcctcgtggatacgaactttattactacttcgatatcttttggtacacttgcca 2499773  T
Q  250 aatctctatca 260  Q
    ||| |||||||    
T  2499772 aatatctatca 2499762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 36330992 - 36331067
Alignment:
Q  170 aaattgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatagttttggttcactt 245  Q
    |||||| ||||||||||||||||||||||||||| ||| | |||||  |||||| |||||||| || ||| |||||    
T  36330992 aaattgttgagtagaaattaacaacggtcctcgtggatgcaaattttattattacttcgatagattaggtacactt 36331067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 260
Target Start/End: Complemental strand, 26711567 - 26711464
Alignment:
Q  156 cctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatag-ttttggttcactttccaaatct 254  Q
    |||||||||||| ||||||||| ||||||| ||||  || |||||||| || |||||||| ||||||| ||| || |  |||||||||||| |||||| |    
T  26711567 cctttttgataatgaaattgctaagtagaagttaa-tacagtcctcgtggaaacgaattt-tttattacttcaattgaatttggttcacttgccaaatat 26711470  T
Q  255 ctatca 260  Q
    ||||||    
T  26711469 ctatca 26711464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 260
Target Start/End: Complemental strand, 26981304 - 26981201
Alignment:
Q  156 cctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatag-ttttggttcactttccaaatct 254  Q
    |||||||||||| ||||||||| ||||||| ||||  || |||||||| || |||||||| ||||||| ||| || |  |||||||||||| |||||| |    
T  26981304 cctttttgataatgaaattgctaagtagaagttaa-tacagtcctcgtggaaacgaattt-tttattacttcaattgaatttggttcacttgccaaatat 26981207  T
Q  255 ctatca 260  Q
    ||||||    
T  26981206 ctatca 26981201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 1e-52; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 13495989 - 13496232
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    |||||||||||||| |||||||| ||||||||||||| || |||||||||| |||| |||   |||||||| ||||||| | | ||||||| ||| |||     
T  13495989 cataggagaacttcggaggattcaaaggtcttaaccatacttctctctaatattcttaaaatcaactttta-ttgttttatttacgtttatgttacaaa- 13496086  T
Q  111 accaatcaactaactgcctagggcgc-caatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatac 209  Q
    || | ||||||    ||||||| |   ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  13496087 acaattcaact----gcctaggacaatcaatataaatt-tatacatcctttttgataaagaaattgccgagtagaaattaacaacggtcctcgtggatac 13496181  T
Q  210 gaatttatttattatttcgatagttttggttcactttccaaatctctatca 260  Q
    |||||||||||||| |||||||||||||||||||||  |||||||||||||    
T  13496182 gaatttatttattacttcgatagttttggttcacttgtcaaatctctatca 13496232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 10764921 - 10765165
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||| |||| ||| | |||||||| ||||||| | | ||||||| ||| |||     
T  10764921 cataggagaacttcagaggattcgaaggtcttaaccatacttctctctaatattctgaaaaccaactttta-ttgttttatttacgtttatgttacaaa- 10765018  T
Q  111 accaatcaactaactgcctagggcgc-caatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatac 209  Q
    || | ||||||    |||||||||   ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  10765019 acaactcaact----gcctagggcaatcaatataaatt-tatacatcctttttgataaagaaattgccgagtagaaattaacaacggtcctcgtggatac 10765113  T
Q  210 gaatttatttattatttcgatag-ttttggttcactttccaaatctctatca 260  Q
    ||| ||  ||| || |||||||| ||||||| ||||| |||||| |||||||    
T  10765114 gaactttattactacttcgatagcttttggtacacttgccaaatatctatca 10765165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 13493264 - 13493508
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||| |||| ||| | |||||||| ||||||| | | ||||||| ||| |||     
T  13493264 cataggagaacttcagaggattcgaaggtcttaaccatacttctctctaatattctgaaaaccaactttta-ttgttttatttacgtttatgttacaaa- 13493361  T
Q  111 accaatcaactaactgcctagggcgc-caatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatac 209  Q
    || | ||||||    |||||||||   ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  13493362 acaactcaact----gcctagggcaatcaatataaatt-tatacatcctttttgataaagaaattgccgagtagaaattaacaacggtcctcgtggatac 13493456  T
Q  210 gaatttatttattatttcgatag-ttttggttcactttccaaatctctatca 260  Q
    ||| ||  ||| || |||||||| ||||||| ||||| |||||| |||||||    
T  13493457 gaactttattactacttcgatagcttttggtacacttgccaaatatctatca 13493508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 32506098 - 32505857
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||| |||| |||| ||| | |||||||| |||||||| || ||||||| |||||||     
T  32506098 cataggagaacttcggaggattcgaaggtcttaaccacacttctctataatattcttaaaaccaactttta-ttgtttttaattcgtttatgttagaaa- 32506001  T
Q  111 accaatcaactaactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaaca----acggtcctcgttga 206  Q
            || ||||||||   ||  ||||||||||| |||||||||||||||||||||||||||  |||||||| ||||||    | ||||||||| ||    
T  32506000 --------ac-aactgcctcacgcatcaatataaatt-tatacatcctttttgataaagaaattgtcgagtagaagttaacatgcaatggtcctcgtgga 32505911  T
Q  207 tacgaatttatttattatttcgatagttttggttcactttccaaatctctatca 260  Q
    |||||  |||||||||| ||||||||||||||||||||| |||||| |||||||    
T  32505910 tacgatcttatttattacttcgatagttttggttcacttgccaaatatctatca 32505857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 39546244 - 39546486
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaat-tttctaaaaccaaacttttaattgttttttatccgtttattttagaaa 109  Q
    |||| ||||||||| |||||||||||||||||||||| || |||||||||| ||| ||||||| ||||||| |||||||| | | ||||||  ||| |||    
T  39546244 catatgagaacttcggaggattcgaaggtcttaaccatacttctctctaatatttttaaaacc-aactttt-attgttttatttgcgtttacgttacaaa 39546341  T
Q  110 taccaatcaactaactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatac 209  Q
     ||||||   | |||||||||||||  |||| | ||||  |||||||| ||| ||||| |||||||||||||| || ||||||| |||||||| ||||||    
T  39546342 aaccaat---ccaactgcctagggcaacaat-tgaatttaatacatcc-tttcgataatgaaattgctgagtaaaagttaacaatggtcctcg-tgatac 39546435  T
Q  210 gaatttatttattatttcgatagttttggttcactttccaaatctctatca 260  Q
    ||  |||||||||| ||| ||| ||||||||||||| ||||||||||||||    
T  39546436 gatcttatttattacttcaataattttggttcacttgccaaatctctatca 39546486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 16190421 - 16190179
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    |||||||||||||| |||||||||||||||||||||| || ||||| ||||||||||||||||| ||||  ||||||||| || ||||||| ||| |||     
T  16190421 cataggagaacttcggaggattcgaaggtcttaaccatacttctctttaattttctaaaaccaatcttt--attgtttttaattcgtttatgttacaaa- 16190325  T
Q  111 accaatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatac 209  Q
        ||||||| || | |||||||| |||   | ||||  ||||||||||| |  ||| |   |||  || || ||||||||||| |||||||| |||||    
T  16190324 ---catcaactcaatttcctagggcacca--ttgaatttaatacatcctttattttaacgtttttgtcgaataaaaattaacaacagtcctcgtggatac 16190230  T
Q  210 gaatttatttattatttcgatagttttggttcactttccaaatctctatca 260  Q
    |||||||||||||| ||||||||||||| |||||||  |||||||| ||||    
T  16190229 gaatttatttattacttcgatagttttgattcacttgtcaaatctccatca 16190179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 34066346 - 34066435
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttat 101  Q
    |||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||| || |||||||    
T  34066346 cataggagaacttcggaggattcgaaggtcttaaccatacttctctctaattttctaaaaccaatctttt-attgtttttaattcgtttat 34066435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 1936628 - 1936698
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaactttta 81  Q
    |||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||| |||||    
T  1936628 cataggagaacttcggaggattcgaaggtcttaaccatacttctctctaattttctaaaaccaaaatttta 1936698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 260
Target Start/End: Complemental strand, 34552525 - 34552438
Alignment:
Q  173 ttgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatagttttggttcactttccaaatctctatca 260  Q
    ||||| ||||||||||||||||||||||||| |||||||| ||  ||| || ||||||||||||||| |||||  ||||| |||||||    
T  34552525 ttgctaagtagaaattaacaacggtcctcgtggatacgaactttattactacttcgatagttttggtacacttgtcaaatatctatca 34552438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 15297471 - 15297557
Alignment:
Q  159 ttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatagttttggttcactt 245  Q
    ||||||||| |||||||||  |||||| ||||||||||||| ||| |||| ||||| ||||| || ||||||||||||||| |||||    
T  15297471 ttttgataatgaaattgctttgtagaagttaacaacggtccccgtggatatgaattcatttactacttcgatagttttggtacactt 15297557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 49716625 - 49716710
Alignment:
Q  151 tacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatagtttt 236  Q
    |||||||||| |  ||| ||| ||||| ||||||||||||||||||||||||| |||||||| ||  |||||| ||||||||||||    
T  49716625 tacatcctttattttaacgaacttgctaagtagaaattaacaacggtcctcgtggatacgaactttattattacttcgatagtttt 49716710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 49720129 - 49720192
Alignment:
Q  173 ttgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatagtttt 236  Q
    ||||| ||||||||||||||||||||||||| |||||||| ||  |||||| ||||||||||||    
T  49720129 ttgctaagtagaaattaacaacggtcctcgtggatacgaactttattattacttcgatagtttt 49720192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 27282351 - 27282274
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttc-taaaaccaaacttttaattgtttt 89  Q
    |||||||||||||| ||| ||||||| |||||||||| || |||||||||| ||| |||||||||  |||||||||||||    
T  27282351 cataggagaacttcggagaattcgaaagtcttaaccatacttctctctaatattcataaaaccaa--ttttaattgtttt 27282274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 18392669 - 18392747
Alignment:
Q  173 ttgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatag-ttttggttcactttccaa 250  Q
    ||||| ||||||||||||||||||||||||| |||||||| ||  ||| || |||||||| ||||||| ||||| ||||    
T  18392669 ttgctaagtagaaattaacaacggtcctcgtggatacgaactttattactacttcgatagcttttggtacacttgccaa 18392747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 50196804 - 50196723
Alignment:
Q  172 attgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatag-ttttggttcactttccaaat 252  Q
    |||||| ||| || |||||||||||||||||| ||||| |||||  |||||| ||| |||| ||||||| ||||| ||||||    
T  50196804 attgctaagttgagattaacaacggtcctcgtggatacaaattttattattacttcaatagtttttggtacacttgccaaat 50196723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 22456736 - 22456700
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaacca 47  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  22456736 cataggagaacttcggaggattcgaaggtcttgacca 22456700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 49147899 - 49147935
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaacca 47  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  49147899 cataggagaacttcggaggattcgaaggtcttgacca 49147935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 4e-46; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 6967149 - 6967393
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||| |||| ||| | |||||||| ||||||| | | ||||||| ||| |||     
T  6967149 cataggagaacttcagaggattcgaaggtcttaaccatacttctctctaatattctgaaaaccaactttta-ttgttttatttacgtttatgttacaaa- 6967246  T
Q  111 accaatcaactaactgcctagggcgc-caatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatac 209  Q
    || | ||||||    |||||||||   ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  6967247 acaactcaact----gcctagggcaatcaatataaatt-tatacatcctttttgataaagaaattgccgagtagaaattaacaacggtcctcgtggatac 6967341  T
Q  210 gaatttatttattatttcgatag-ttttggttcactttccaaatctctatca 260  Q
    ||| ||  ||| || |||||||| ||||||| ||||| |||||| |||||||    
T  6967342 gaactttattactacttcgatagcttttggtacacttgccaaatatctatca 6967393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 17866597 - 17866353
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    ||||||||||||||||||||||||||||||| ||||| || |||||||||| |||| ||| | |||||||| ||||||| | | ||||||| ||| |||     
T  17866597 cataggagaacttcagaggattcgaaggtctaaaccatacttctctctaatattctgaaaaccaactttta-ttgttttatttacgtttatgttacaaa- 17866500  T
Q  111 accaatcaactaactgcctagggcgc-caatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatac 209  Q
    ||   ||||||    |||||||||   ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  17866499 acagctcaact----gcctagggcaatcaatataaatt-tatacatcctttttgataaagaaattgccgagtagaaattaacaacggtcctcgtggatac 17866405  T
Q  210 gaatttatttattatttcgatag-ttttggttcactttccaaatctctatca 260  Q
    ||| ||  ||| || |||||||| ||||||| ||||| |||||| |||||||    
T  17866404 gaactttattactacttcgatagcttttggtacacttgccaaatatctatca 17866353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 24783410 - 24783654
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    |||| ||||||||| |||||||| ||||||||||||| || |||||||||| |||| ||| | |||||||| ||||||| | |  |||||| ||| |||     
T  24783410 catatgagaacttcggaggattcaaaggtcttaaccatacttctctctaatattcttaaaaccaactttta-ttgttttatttaagtttatgttacaaa- 24783507  T
Q  111 accaatcaactaactgcctagggcgc-caatataaattctatacatcctttttgataaa-gaaattgctgagtagaaattaacaacggtcctcgttgata 208  Q
    || | ||||||    |||| || |   ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||    
T  24783508 acaactcaact----gccttggacaatcaatataaatt-tatacatcctttttgataaaagaaattgccgagtagaaattaacaacggtcctcgtggata 24783602  T
Q  209 cgaatttatttattatttcgatagttttggttcactttccaaatctctatca 260  Q
    | ||||||||||||| |||||||||||||||||||||  |||||||||||||    
T  24783603 caaatttatttattacttcgatagttttggttcacttgtcaaatctctatca 24783654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 36843181 - 36842937
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttc-taaaaccaaacttttaattgttttttatccgtttattttagaaa 109  Q
    |||||||||||||| |||||||||||||||||||||| || |||||||||| ||| ||||||||| |||||| ||||||| | | |||||| |||| |||    
T  36843181 cataggagaacttcggaggattcgaaggtcttaaccatacttctctctaatattcataaaaccaa-ctttta-ttgttttatttacgtttactttataaa 36843084  T
Q  110 taccaatcaactaactgcctagggcgc-caatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgata 208  Q
     ||||||| |   ||||||||||||   | || | ||||  |||||||||||  ||||| |||||||||||||||||||||||||||||||| || |||     
T  36843083 aaccaatcca---actgcctagggcaaaccat-tgaatttaatacatcctttc-gataacgaaattgctgagtagaaattaacaacggtccttgtggatt 36842989  T
Q  209 cgaatttatttattatttcgatagttttggttcactttccaaatctctatca 260  Q
    |||  |||||||||| ||||||| ||||||||||||| ||||||||||||||    
T  36842988 cgatcttatttattacttcgataattttggttcacttgccaaatctctatca 36842937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 9765803 - 9766046
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||| |||| ||| | |||||||| || |||| | |  ||||| |||| |||     
T  9765803 cataggagaacttcagaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaactttta-ttattttatttatgtttactttataaaa 9765901  T
Q  111 accaatcaactaactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacg 210  Q
    ||||||| |   ||||||||||||  | | |  ||||  |||||||||||| |||||||||| ||||||||||||||||||||||| |||  | ||| ||    
T  9765902 accaatcca---actgcctagggcaaccaga--aatttaatacatccttttcgataaagaaaatgctgagtagaaattaacaacggcccttatggattcg 9765996  T
Q  211 aatttatttattatttcgatagttttggttcactttccaaatctctatca 260  Q
    |  |||||||||| |||||||||||||||| |||| |||||| |||||||    
T  9765997 atcttatttattacttcgatagttttggttaacttgccaaatatctatca 9766046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 149 - 261
Target Start/End: Complemental strand, 17857992 - 17857879
Alignment:
Q  149 tatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatag-ttttggttcactttc 247  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||  ||| ||||||||||| ||||||| ||||| |    
T  17857992 tatacatcctttttgataaagaaattgccgagtagaaattaacaacggtcctcgtggatacgaactttattactatttcgatagcttttggtacacttgc 17857893  T
Q  248 caaatctctatcat 261  Q
    ||||| ||||||||    
T  17857892 caaatatctatcat 17857879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 36222552 - 36222378
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    |||||||||||||| ||||||||||||| |||||||| || |||||| ||| |||||||| | ||  |||  |||||||| ||| |||||| |||||||     
T  36222552 cataggagaacttcggaggattcgaaggacttaaccatacttctctc-aatcttctaaaaaccaatctttctttgtttttaatcagtttatgttagaaa- 36222455  T
Q  111 accaatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaa 190  Q
        ||||||| ||||||||||||| |||||||||||| |||||||||||||| |||| |||||||||  |||||||||||    
T  36222454 ----atcaactcaactgcctagggcaccaatataaattttatacatcctttttaataatgaaattgctacgtagaaattaa 36222378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 46846556 - 46846368
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaa-ccaaacttttaattgtttttta-tccgtttattttagaa 108  Q
    ||||| |||||||| ||||||||||||| |||||||| || |||||| |||||||||||| |||| |||||| |||||||||| || ||||||  ||  |    
T  46846556 catagaagaacttcggaggattcgaaggacttaaccatacttctctc-aattttctaaaaaccaatctttta-ttgttttttagtcagtttataataaga 46846459  T
Q  109 ataccaatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgt 203  Q
    ||     |||||| ||||||||||||| |||||||||||| |||||||||||||| |||| ||||||||| ||||||||||||  || ||||||||    
T  46846458 at-----tcaactcaactgcctagggcaccaatataaattttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgt 46846368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 33312996 - 33313195
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttat-ccgtttattttagaaa 109  Q
    ||||||||| |||||||||||||||||| ||||||||    ||||||  ||||||||||||||| | |||| || ||||| || |||||||| ||| |||    
T  33312996 cataggagagcttcagaggattcgaaggacttaaccatttttctctcagattttctaaaaccaatccttta-ttatttttaattccgtttatgttacaaa 33313094  T
Q  110 taccaatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgata 208  Q
         ||||||| ||||||||||||| |||||||||||| || ||||||||||| |||| ||||||||| ||||||| ||||  || |||||||| || |    
T  33313095 -----atcaactcaactgcctagggcaccaatataaattttacacatcctttttaataatgaaattgctaagtagaagttaa-tacagtcctcgtagaaa 33313188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 11279496 - 11279667
Alignment:
Q  14 aggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaatacc 113  Q
    |||||||||||  | |||||||||| |||||||| || |||||| ||| |||||||| | ||  |||| | |||||| ||| |||||| ||| |||        
T  11279496 aggagaacttcgaaagattcgaaggacttaaccatacttctctc-aatcttctaaaaaccaatctttattcgtttttaatcagtttatgttacaaa---- 11279590  T
Q  114 aatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaa 190  Q
     ||||||| ||||||||||||| |||||||||||| |||||||||||||| |||| ||||||||| ||||||||||||    
T  11279591 -atcaactcaactgcctagggcaccaatataaattttatacatcctttttaataatgaaattgctaagtagaaattaa 11279667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 23107989 - 23108078
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttat 101  Q
    ||||||||| |||| || |||||||||||||||||||||  ||||||||||||||||||||||| ||||| ||||||||| || |||||||    
T  23107989 cataggagagcttcggatgattcgaaggtcttaaccacatttctctctaattttctaaaaccaatctttt-attgtttttaattcgtttat 23108078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 23313504 - 23313415
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttat 101  Q
    |||||||||||||| |||||||| ||||||||||||| || ||||||||||||||||||||||  ||||| ||||||||| || |||||||    
T  23313504 cataggagaacttcggaggattcaaaggtcttaaccatacttctctctaattttctaaaaccattctttt-attgtttttaattcgtttat 23313415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 3862151 - 3861938
Alignment:
Q  10 gcataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaa 109  Q
    |||||||||||||||  |||||||||||||||||| || || ||||||||||||| ||||||||| ||||| ||||||||| ||| |||||| ||| |||    
T  3862151 gcataggagaacttcgaaggattcgaaggtcttaatcatacttctctctaattttataaaaccaatctttt-attgtttttaatcagtttatgttacaaa 3862053  T
Q  110 taccaatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgata 208  Q
        |||||| | |||||||||||||  ||   | ||||  |||||||| |||| |||| ||||||||| ||||||| |||| |||  ||||||| ||||    
T  3862052 ---aaatcaattgaactgcctagggcatca--ttgaatttaatacatcc-ttttaataatgaaattgctaagtagaagttaataacaatcctcgtggata 3861959  T
Q  209 cgaatttatttattatttcgat 230  Q
    | || |||||||||| ||||||    
T  3861958 c-aaattatttattacttcgat 3861938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 17863338 - 17863268
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaactttta 81  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||| |||| ||| | ||||||||    
T  17863338 cataggagaacttcagaggattcgaaggtcttaaccatacttctctctaatattctgaaaaccaactttta 17863268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 23759852 - 23759609
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    ||||||||| |||  ||||||||||||| |||||||| || |||||| | |||  ||||| | || | || ||||||||| ||| |||||| |||  ||     
T  23759852 cataggagagctttggaggattcgaaggacttaaccatacttctctcgattttcttaaaaaccaattctttattgtttttaatcagtttatgttactaa- 23759754  T
Q  111 accaatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatac 209  Q
        ||||||| ||||||||||||| |||||||||||| |||||||||||||| | || ||| ||||| ||||||| ||||  || |||||||| || ||    
T  23759753 ----atcaactcaactgcctagggcaccaatataaatt-tatacatccttttt-aaaatgaatttgctaagtagaagttaaatacagtcctcgtagaaac 23759660  T
Q  210 gaatttatttattatttcgatag-ttttggttcactttccaaatctctatca 260  Q
    ||| || ||||||| |||||| |  |||||||||||| |||||| |||||||    
T  23759659 gaactt-tttattacttcgattgaatttggttcacttgccaaatatctatca 23759609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 173 - 260
Target Start/End: Original strand, 38431669 - 38431757
Alignment:
Q  173 ttgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatag-ttttggttcactttccaaatctctatca 260  Q
    ||||| ||||||||||||||||||||||| | |||||||| ||  ||| || |||||||| ||||||| |||||||||||| |||||||    
T  38431669 ttgctaagtagaaattaacaacggtcctcatggatacgaactttattactacttcgatagcttttggtacactttccaaatatctatca 38431757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 28577761 - 28577687
Alignment:
Q  177 tgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatagttttggttcactttccaaa 251  Q
    ||||||||| ||||||||||||||||| |||| ||||||  |||||  ||||||||||||||| ||||| |||||    
T  28577761 tgagtagaagttaacaacggtcctcgtagatatgaatttgattattgcttcgatagttttggtacacttgccaaa 28577687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 294866 - 295098
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    |||||||||||||| ||||||||||| | |||||||| || |||||| |||||||||||||||| | || | ||| |||| | | | |||| ||| |||     
T  294866 cataggagaacttcggaggattcgaaagacttaaccatacttctctc-aattttctaaaaccaatcctt-atttgcttttaaccagcttatgttacaaaa 294963  T
Q  111 accaatcaactaactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacg 210  Q
          |||||| |||||| ||||  |||||||||||   |||||||||||| |||| ||||||||| ||||||| ||||  || |||||||| || ||     
T  294964 ------caacta-ctgcctcgggcatcaatataaatttattacatcctttttaataatgaaattgctaagtagaagttaaatacagtcctcgtggacaca 295056  T
Q  211 aatttatttattatttcgatag-ttttggttcactttccaaat 252  Q
    ||||| ||||||| |||||| |  |||||||||||| ||||||    
T  295057 aattt-tttattacttcgattgaatttggttcacttgccaaat 295098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 252
Target Start/End: Complemental strand, 3541034 - 3540932
Alignment:
Q  150 atacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatagttttggttcactttcca 249  Q
    ||||||||||| |  ||| ||| ||||| ||||||| || |||||||||||||| |||||||| ||  ||| || || |||||||||||| ||||| |||    
T  3541034 atacatcctttattttaacgaacttgctaagtagaagttcacaacggtcctcgtggatacgaactttattactactttgatagttttggtacacttgcca 3540935  T
Q  250 aat 252  Q
    |||    
T  3540934 aat 3540932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 252
Target Start/End: Original strand, 6964541 - 6964643
Alignment:
Q  151 tacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatag-ttttggttcactttcca 249  Q
    |||||||||| |  ||| ||| ||||| |||||||||||||||||| |||||| |||||||| ||  ||| || |||||||| ||||||| ||||| |||    
T  6964541 tacatcctttattttaacgaacttgctaagtagaaattaacaacggccctcgtggatacgaacttcattactacttcgatagtttttggtacacttacca 6964640  T
Q  250 aat 252  Q
    |||    
T  6964641 aat 6964643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 269 - 297
Target Start/End: Original strand, 28244189 - 28244217
Alignment:
Q  269 tgttaatctttgtgaaattgatgttaatg 297  Q
    |||||||||||||||||||||||||||||    
T  28244189 tgttaatctttgtgaaattgatgttaatg 28244217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 5e-39; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 150 - 260
Target Start/End: Original strand, 46731589 - 46731699
Alignment:
Q  150 atacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatagttttggttcactttcca 249  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||| |||||||||||| |||||||| |||    
T  46731589 atacatcctttttgataaagaaattgctgagtagaagttaacaacggtcctcgtggatacaaatttattcattacttcgatagtttttgttcacttgcca 46731688  T
Q  250 aatctctatca 260  Q
    |||||||||||    
T  46731689 aatctctatca 46731699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 13979488 - 13979730
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    ||||||||| |||| |||||||| ||||||||||||| || |||||||||| |||| ||| | |||||||| ||||||| | | |||||| ||||  ||     
T  13979488 cataggagagcttcggaggattcaaaggtcttaaccatacttctctctaatattcttaaaaccaactttta-ttgttttatttacgtttactttattaaa 13979586  T
Q  111 accaatcaactaactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacg 210  Q
    ||||||| |   ||||||| ||||  | | |||  ||  |||||||||||  |||||||||||||||||||||||||||||| | |||||||| ||| ||    
T  13979587 accaatcca---actgccttgggcaaccagata--tttaatacatcctttc-gataaagaaattgctgagtagaaattaacagcagtcctcgtggattcg 13979680  T
Q  211 aatttatttattatttcgatagttttggttcactttccaaatctctatca 260  Q
    | ||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  13979681 attttatttattacttcgatagttttggttcacttgccaaatctctatca 13979730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 22626554 - 22626312
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    ||||||||| |||  ||||||||||||| |||||||| || |||||| ||||||||||| ||||   |||| |||||||| ||| |||||| |||  ||     
T  22626554 cataggagagctttggaggattcgaaggacttaaccatacttctctc-aattttctaaatccaattcttta-ttgtttttaatcagtttatgttactaa- 22626458  T
Q  111 accaatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatac 209  Q
        ||||||| ||||||||||||| |||||||||||| |||||||||||||| |||| ||||||||| ||||||| ||||  || |||||||| || ||    
T  22626457 ----atcaactcaactgcctagggcaccaatataaatt-tatacatcctttttaataatgaaattgctaagtagaagttaaatacagtcctcgtggaaac 22626363  T
Q  210 gaatttatttattatttcgatag-ttttggttcactttccaaatctctatca 260  Q
    ||| || ||||||| |||||| |  |||||||||||| |||||| |||||||    
T  22626362 gaactt-tttattacttcgatcgaatttggttcacttgccaaatatctatca 22626312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 11138812 - 11138570
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaactttta-attgttttttatccgtttattttagaaa 109  Q
    ||||||||| |||  ||||||||||||| |||||||| || |||||| |||||||| || ||||  || || ||||||||| ||| |||||| |||  ||    
T  11138812 cataggagagctttggaggattcgaaggacttaaccatacttctctc-aattttctgaatccaa--ttctatattgtttttaatcagtttatgttactaa 11138716  T
Q  110 taccaatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgata 208  Q
         ||||||| ||||||||||||| |||||||||||| |||||||||||||| |||| ||||||||| ||||||| ||||  || |||||||| || |    
T  11138715 -----atcaactcaactgcctagggcaccaatataaatt-tatacatcctttttaataatgaaattgctaagtagaagttaaatacagtcctcgtggaaa 11138622  T
Q  209 cgaatttatttattatttcgatag-ttttggttcactttccaaatctctatca 260  Q
    |||| || ||||||| |||||| |  |||||||||||| |||||| |||||||    
T  11138621 cgaactt-tttattacttcgatcgaatttggttcacttgccaaatatctatca 11138570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 169 - 260
Target Start/End: Complemental strand, 26822130 - 26822039
Alignment:
Q  169 gaaattgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatagttttggttcactttccaaatctctatca 260  Q
    ||||||| |||||| ||||||||| ||||||| || |||||||||||  |||||| ||||||||||||||| |||||||||||  |||||||    
T  26822130 gaaattgttgagtaaaaattaacagcggtccttgtggatacgaattttattattacttcgatagttttggtacactttccaaaagtctatca 26822039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 39563754 - 39563510
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    ||||||||| | || ||||||||||||| ||||||||  | ||||||  ||||||||||||||| |||||| |  ||||   |  |||||| ||| |||     
T  39563754 cataggagagcgtcggaggattcgaaggacttaaccattcttctctcagattttctaaaaccaatcttttactatttttaattttgtttatgttacaaa- 39563656  T
Q  111 accaatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatac 209  Q
        ||||||| ||||||||||||| | |||||||||| || ||||||||||| |||| ||||||||| ||||||| ||||  || |||||||| || ||    
T  39563655 ----atcaactcaactgcctagggcactaatataaattttacacatccttttttataatgaaattgctaagtagaagttaa-tacagtcctcgtggaaac 39563561  T
Q  210 gaatttatttattatttcgatag-ttttggttcactttccaaatctctatca 260  Q
    |||||| ||||||| || ||| |  |||||||||||| |||||| |||||||    
T  39563560 gaattt-tttattactttgattgaatttggttcacttgccaaatatctatca 39563510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 46731496 - 46731559
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaa 74  Q
    |||| ||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||    
T  46731496 catatgagaacttcggaggattcgaaggtcttaaccttacatctctctaattttctaaaaccaa 46731559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 27055149 - 27055215
Alignment:
Q  173 ttgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatagttttggt 239  Q
    ||||| ||||||||||||||||||||||||| |||||||| ||  ||| || |||||||||||||||    
T  27055149 ttgctaagtagaaattaacaacggtcctcgtggatacgaaatttattactacttcgatagttttggt 27055215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 260
Target Start/End: Original strand, 19869233 - 19869343
Alignment:
Q  151 tacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatag-ttttggttcactttcca 249  Q
    |||||||||| |  ||| ||| ||||| ||||||||||||||||||||||||| |||||||| ||  ||| || || ||||| |||| || ||||| |||    
T  19869233 tacatcctttattttaacgaacttgctaagtagaaattaacaacggtcctcgtggatacgaactttattactactttgatagattttagtacacttgcca 19869332  T
Q  250 aatctctatca 260  Q
    ||| |||||||    
T  19869333 aatatctatca 19869343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 35366510 - 35366563
Alignment:
Q  150 atacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgtt 204  Q
    ||||||||||||| |||| ||||||||| ||||||| ||||||||||||||||||    
T  35366510 atacatccttttt-ataatgaaattgctaagtagaagttaacaacggtcctcgtt 35366563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 20536445 - 20536333
Alignment:
Q  151 tacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacga--atttatttattatttcgatag-ttttggttcactttc 247  Q
    |||||||||||| |||| |||||| || ||||||| ||||  || |||||||| |||||||   |||||||| || ||| |||| ||||||| |||||||    
T  20536445 tacatcctttttaataatgaaatttctaagtagaagttaaatacagtcctcgtggatacgatcttttatttactacttcaatagtttttggtacactttc 20536346  T
Q  248 caaatctctatca 260  Q
    ||||| |||||||    
T  20536345 caaatatctatca 20536333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 25492175 - 25492248
Alignment:
Q  173 ttgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatag-ttttggttcactt 245  Q
    ||||| ||||||||||||||||| ||||||| |||||||| ||  ||| ||||| ||||| ||||||| |||||    
T  25492175 ttgctaagtagaaattaacaacgatcctcgtggatacgaactttattactattttgatagcttttggtacactt 25492248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 150 - 260
Target Start/End: Complemental strand, 2728 - 2619
Alignment:
Q  150 atacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatagttttggttcactttcca 249  Q
    |||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||||  |||||||||| ||||||||||||||| ||||| |||    
T  2728 atacatcctttt-gataacgaaattgctgagtagaagttaacaacggtcctcgtggatacgatcttatttattacttcgatagttttggtccacttgcca 2630  T
Q  250 aatctctatca 260  Q
    |||||| ||||    
T  2629 aatctccatca 2619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 12575535 - 12575331
Alignment:
Q  19 aacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaataccaatca 118  Q
    |||||| |||||||| | ||||||||||| || ||||||||||||||||||||||| |||||| |||||||| |||  ||||| ||| |||    |||||    
T  12575535 aacttcggaggattcaatggtcttaaccatacttctctctaattttctaaaaccaatctttta-ttgtttttaatcaatttatgttacaaa----aatca 12575441  T
Q  119 act-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacgaatttat 217  Q
    ||| ||||||||||||| ||| |   ||||  ||||||||||||| |||| ||| ||| ||||||||| |||||||| |||||||| |||||||| ||||    
T  12575440 actcaactgcctagggcaccattg--aatttaatacatcctttttaataatgaacttgttgagtagaagttaacaacagtcctcgtggatacgaa-ttat 12575344  T
Q  218 ttattatttcgat 230  Q
    |||||| ||||||    
T  12575343 ttattacttcgat 12575331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 14418467 - 14418707
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    |||||||||| ||| ||||||||||| |||||||||| || |||||||||| |||| ||| | |||||||| |||||||| ||  |||||| ||| |||     
T  14418467 cataggagaaattcggaggattcgaatgtcttaaccatacttctctctaatattcttaaaaccaactttta-ttgtttttaatttgtttatgttaaaaac 14418565  T
Q  111 accaatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatac 209  Q
          ||||| |||||||||||||  | || | ||||  | | |||||||||||||||||||||||| ||| | | ||||||||||||||||| || ||    
T  14418566 ------caactcaactgcctagggcaaccat-tgaatttaacatatcctttttgataaagaaattgctaagttgtagttaacaacggtcctcgtgga-ac 14418657  T
Q  210 gaatttatttattatttcgatagttttggttcactttccaaatctctatca 260  Q
    ||| ||||||| || |||||||| |||||||||||| |||||  |||||||    
T  14418658 gaa-ttatttactacttcgatagctttggttcacttgccaaaaatctatca 14418707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 13097022 - 13097101
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgtttttt 91  Q
    ||||||| |||||| |||||||||||||||||||||| || |||||||||||||||||||| || ||||| ||||||||||    
T  13097022 cataggataacttcggaggattcgaaggtcttaaccatacttctctctaattttctaaaactaatctttt-attgtttttt 13097101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 39659821 - 39659712
Alignment:
Q  151 tacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatagttttggttcactttccaa 250  Q
    |||||||||| |  ||| ||| ||||| ||||||||||||||| ||||||||| |||||||| ||  ||| || ||||||||||| ||| ||||| ||||    
T  39659821 tacatcctttattttaacgaacttgctaagtagaaattaacaatggtcctcgtggatacgaactttattactacttcgatagtttcggtacacttgccaa 39659722  T
Q  251 atctctatca 260  Q
    || |||||||    
T  39659721 atatctatca 39659712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 260
Target Start/End: Original strand, 9467319 - 9467429
Alignment:
Q  151 tacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatag-ttttggttcactttcca 249  Q
    |||||||||| |  ||| ||| ||||| || |||||||||||||||||||||| |||||||| ||  ||| || |||||||| ||||||| ||||| |||    
T  9467319 tacatcctttattttaacgaacttgctaagaagaaattaacaacggtcctcgtggatacgaactttattactacttcgatagcttttggtacacttgcca 9467418  T
Q  250 aatctctatca 260  Q
    ||| |||||||    
T  9467419 aatatctatca 9467429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 41778988 - 41778927
Alignment:
Q  8 tagcataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaa 69  Q
    ||||||||||||||||| || |||| |||||||||||||| || ||||| |||| |||||||    
T  41778988 tagcataggagaacttcggaagatttgaaggtcttaaccatacttctctttaatcttctaaa 41778927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 260
Target Start/End: Original strand, 453863 - 453951
Alignment:
Q  173 ttgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatag-ttttggttcactttccaaatctctatca 260  Q
    ||||| ||||||||||||||||||||||||| |||||||| ||  ||| || ||| |||| ||||||| |||||  ||||| |||||||    
T  453863 ttgctaagtagaaattaacaacggtcctcgtggatacgaactttattagtacttccatagtttttggtacacttgtcaaatatctatca 453951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 41836466 - 41836430
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaacca 47  Q
    |||||||||||||| ||||||||||||||||||||||    
T  41836466 cataggagaacttcggaggattcgaaggtcttaacca 41836430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 23644108 - 23644158
Alignment:
Q  196 gtcctcgttgatacgaatttattt-attatttcgatagttttggttcactt 245  Q
    |||||||| |||||||| |||||| ||||||||||||||||| ||||||||    
T  23644108 gtcctcgtggatacgaacttattttattatttcgatagttttagttcactt 23644158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 44008307 - 44008360
Alignment:
Q  21 cttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaa 74  Q
    |||| ||||||||||||||| |||||| |  ||| |||||||||||||||||||    
T  44008307 cttcggaggattcgaaggtcataaccataattctttctaattttctaaaaccaa 44008360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 9865 - 10038
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    ||||||||| |||| ||||||||||||| |||||||| || |||||| |||||||||||| | || | || ||||||||| ||| |||||| |||  ||     
T  9865 cataggagagcttcggaggattcgaaggacttaaccatacttctctc-aattttctaaaaaccaattatttattgtttttaatcagtttatgttactaa- 9962  T
Q  111 accaatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaa 190  Q
        ||||||| ||||||||||||  |||||||||||| |||||||||||||| |||| ||||||||| ||||||| ||||    
T  9963 ----atcaactcaactgcctaggggaccaatataaatt-tatacatcctttttaataatgaaattgctaagtagaagttaa 10038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 24426 - 24185
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    ||||||||| |||| ||||||||||||| ||||||||  | |||||| |||||||||||| | || | || ||||||||| ||| |||||||     | |    
T  24426 cataggagagcttcggaggattcgaaggacttaaccatgcttctctc-aattttctaaaaaccaattctttattgtttttaatcagtttatt-----act 24333  T
Q  111 accaatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatac 209  Q
    |  |||||||| ||||||||||||| ||||||  |||| |||||||||||||| |||| ||||||| ||||||||| ||||  || |||||||| || ||    
T  24332 a--aatcaactcaactgcctagggcaccaataataatt-tatacatcctttttaataatgaaattgttgagtagaagttaaatacagtcctcgtggaaac 24236  T
Q  210 gaatttatttattatttcgatag-ttttggttcactttccaaatctctatca 260  Q
     |||||| ||| || |||||||| ||||||| ||||| |||||| |||||||    
T  24235 aaattta-ttactacttcgatagcttttggtacacttgccaaatttctatca 24185  T

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Target: scaffold0363 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 251 - 11
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaaccaaacttttaattgttttttatccgtttattttagaaat 110  Q
    |||||||||| ||| ||||||||||| |||||||||| || |||||||||| |||| ||| | |||||||| |||||||| ||  |||||| ||| |||     
T  251 cataggagaaattcggaggattcgaatgtcttaaccatacttctctctaatattcttaaaaccaactttta-ttgtttttaatttgtttatgttaaaaac 153  T
Q  111 accaatcaact-aactgcctagggcgccaatataaattctatacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatac 209  Q
          ||||| |||||||||||||  | || | ||||  | | |||||||||||||||||||||||| ||| | | ||||||||||||||||| || ||    
T  152 ------caactcaactgcctagggcaaccat-tgaatttaacatatcctttttgataaagaaattgctaagttgtagttaacaacggtcctcgtgga-ac 61  T
Q  210 gaatttatttattatttcgatagttttggttcactttccaaatctctatca 260  Q
    ||| ||||||| || |||||||| |||||||||||| |||||  |||||||    
T  60 gaa-ttatttactacttcgatagctttggttcacttgccaaaaatctatca 11  T

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Target: scaffold0068 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 33839 - 33730
Alignment:
Q  151 tacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatagttttggttcactttccaa 250  Q
    |||||||||| |  ||| ||| ||||| ||||||||||||||||||||||||| ||||| || ||  ||| || ||||||||||||||| ||||| ||||    
T  33839 tacatcctttattttaacgaacttgctaagtagaaattaacaacggtcctcgtggatacaaactttattactacttcgatagttttggtacacttgccaa 33740  T
Q  251 atctctatca 260  Q
    || |||||||    
T  33739 atatctatca 33730  T

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Target: scaffold0567 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 6054 - 5995
Alignment:
Q  11 cataggagaacttcagaggattcgaaggtcttaaccacacatctctctaattttctaaaa 70  Q
    ||||||||||| || |||||||||||||||||||||| || |||||||||||||||||||    
T  6054 cataggagaacctcggaggattcgaaggtcttaaccatacttctctctaattttctaaaa 5995  T

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Target: scaffold0273 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 151 - 252
Target Start/End: Complemental strand, 19618 - 19517
Alignment:
Q  151 tacatcctttttgataaagaaattgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatagttttggttcactttccaa 250  Q
    |||||||||| |  ||| ||| ||||| ||||||||||||||||||||||||| |||||||| ||  ||| || || || ||||||||| ||||| ||||    
T  19618 tacatcctttattttaacgaacttgctaagtagaaattaacaacggtcctcgtggatacgaactttattactactttgacagttttggtacacttgccaa 19519  T
Q  251 at 252  Q
    ||    
T  19518 at 19517  T

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Target: scaffold0766 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 170 - 251
Target Start/End: Original strand, 3661 - 3739
Alignment:
Q  170 aaattgctgagtagaaattaacaacggtcctcgttgatacgaatttatttattatttcgatagttttggttcactttccaaa 251  Q
    |||||||||||||||| ||||||||||||||||| ||||| |||   ||||||| ||||||||  ||||| ||||| |||||    
T  3661 aaattgctgagtagaagttaacaacggtcctcgtggatacaaat---tttattacttcgatagaattggtacacttgccaaa 3739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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