View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6265_low_3 (Length: 552)
Name: NF6265_low_3
Description: NF6265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6265_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 381
Target Start/End: Original strand, 6097208 - 6097570
Alignment:
| Q |
19 |
ctattaccagaatcaaaatagaatcatacctgtctcaagtggcaagatcatccatccataaaagagcattgtctcaagaaaattggacacctatgcaaat |
118 |
Q |
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| T |
6097208 |
ctattacccgaatcaaaatagaatcatacctgtctcaagtggcaagatcatccatccataaaagagcattgtctcaagaaaattggacacctatgcaaat |
6097307 |
T |
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| Q |
119 |
atgtggagataaacatcagaaaaaggatatatgaatataatttttacatcttttaagataacttattcaatagatacaatacttaatttaccatatagga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6097308 |
atgtggagataaacatcagaaaaaggatatatgaatataatttttacatcttttaagataacttattcaatagatacaatacttaatttaccatatatga |
6097407 |
T |
|
| Q |
219 |
atttaacaaaagaatcagagttggttcctgattgtacttgatgttcaaggctatcaagaaaaagcttgatgttcaaatagaaagtatggaacaataataa |
318 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6097408 |
atttaacaaaagaatcagagttgtttcctgattgtacttgatgttcaaggctatcaagaaaaagcttgatgttcaaatagaaagtatggaacaataataa |
6097507 |
T |
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| Q |
319 |
atcatgaataagaagagctaaagaataaagatatagttctttaagataatcaaaacaaattac |
381 |
Q |
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| T |
6097508 |
atcatgaataagaagagctaaagaataaagatatagttctttaagataatcaaaacaaattac |
6097570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 279 - 484
Target Start/End: Complemental strand, 1593338 - 1593132
Alignment:
| Q |
279 |
aaagcttgatgttcaaatagaaagtatggaacaataata--aatcatgaataagaagagctaaagaataaagatatagttctttaagataatcaaaacaa |
376 |
Q |
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| T |
1593338 |
aaagtttgatgttcaaacagaaagtatggaacaatagtagaaatcatgaatgagaagaggtgaagaataaagatatagttctttgagataatcaaaacaa |
1593239 |
T |
|
| Q |
377 |
attactttgcagagattgagtnnnnnnnccagtcaaaactcaaaccaatagaccagtgtaaaaattgaaagtgggtgtggtgtacactgtgtgtaggcat |
476 |
Q |
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| T |
1593238 |
attactttgcagagagtga-tgaaagaaccagtcacaagtcaaaccaataaaccagtggaaaaattgaaagtgggtgtggtttacattgtgtgtaggcat |
1593140 |
T |
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| Q |
477 |
tggtattg |
484 |
Q |
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|||||||| |
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| T |
1593139 |
tggtattg |
1593132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 450 - 538
Target Start/End: Original strand, 6097751 - 6097839
Alignment:
| Q |
450 |
ggtgtggtgtacactgtgtgtaggcattggtattgcgtcagtgttttatagcttttcattatttgggacaagagtattattgtactgat |
538 |
Q |
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| T |
6097751 |
ggtgtggtgtacattgtgtgtaggcattggtattgcgtcagtgtttcatagcttttcattatttgggacaagagtattattgtactgat |
6097839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 4636289 - 4636389
Alignment:
| Q |
56 |
agtggcaagatcatccatccataaaagagcattgtctcaagaaaattggacacctatgcaaatatgtggagataaacatcagaaaaaggatatatgaata |
155 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
4636289 |
agtggcaagatcatccatccataaaagagcactatctcaagaaaattggacacctatgcaaatatgtggagataaacatcaaaaaaaggatacatgaata |
4636388 |
T |
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| Q |
156 |
t |
156 |
Q |
| |
|
| |
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|
| T |
4636389 |
t |
4636389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 4636476 - 4636551
Alignment:
| Q |
160 |
ttttacatcttttaagataacttattcaatagatacaatacttaatttaccatataggaatttaacaaaagaatca |
235 |
Q |
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| T |
4636476 |
ttttacatcttttaagatgatttattcaatagatacaatacttaatttaccatataggactttaacaaaagaatca |
4636551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 71 - 156
Target Start/End: Complemental strand, 46009078 - 46008993
Alignment:
| Q |
71 |
catccataaaagagcattgtctcaagaaaattggacacctatgcaaatatgtggagataaacatcagaaaaaggatatatgaatat |
156 |
Q |
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| T |
46009078 |
catccataaaagagcattatctcaagaaaattggacacctatgcaaatatgtggagataaacatcaaaaaaatgatacatgaatat |
46008993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 46008906 - 46008827
Alignment:
| Q |
160 |
ttttacatcttttaagataacttattcaatagatacaatacttaatttaccatataggaatttaacaaaagaatcagagt |
239 |
Q |
| |
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|||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46008906 |
ttttacatctttcaaaataatttattcaatagatacaatacttaatttaccatataggaatttaacaaaagaatcagagt |
46008827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 30 - 121
Target Start/End: Complemental strand, 11505093 - 11505007
Alignment:
| Q |
30 |
atcaaaatagaatcatacctgtctcaagtggcaagatcatccatccataaaagagcattgtctcaagaaaattggacacctatgcaaatatg |
121 |
Q |
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|||||||| ||||||||||||||| ||||||||| |||||||||||||||| ||||||||| ||| | |||||||||||||||||||| |
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| T |
11505093 |
atcaaaatggaatcatacctgtcttaagtggcaa-----tccatccataaaagagtattgtctcatgaacactggacacctatgcaaatatg |
11505007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 3077165 - 3077104
Alignment:
| Q |
95 |
agaaaattggacacctatgcaaatatgtggagataaacatcagaaaaaggatatatgaatat |
156 |
Q |
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|||| |||||||||||||||||||||||||| | || ||||| |||||||||| |||||||| |
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| T |
3077165 |
agaacattggacacctatgcaaatatgtggacaaaagcatcacaaaaaggatacatgaatat |
3077104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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