View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6265_low_7 (Length: 289)
Name: NF6265_low_7
Description: NF6265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6265_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 45206636 - 45206896
Alignment:
| Q |
18 |
atatttgccgcattcagaatatgttct-aagaacttgcagggaccaaccatttattaacatgctaagtgttgctcttctaggccaatgtggtggcagttg |
116 |
Q |
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| T |
45206636 |
atatttgccgcattcagaatatgttcttaagaacttgcagggaccaaccatttattaacatgctaagtgttgctcttctaggccaatgtggtggcagttg |
45206735 |
T |
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| Q |
117 |
acaatattgcaagtcaactgcatggtcctgtatgggttaatttgtgtgctgatgaaccaatttgcaatcgaatctgttctgtttgaaattcaccctttct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45206736 |
acaatattgcaagtcaactgcatggtcctgtatgggttaatttgtgtgttgatgaaccaatttgcaatcgaatctgttctgtttgaaattcaccctttct |
45206835 |
T |
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| Q |
217 |
caaaatcatatcaaacaatcaatcttctatgctcgattgttatgttttgtcctgtgatgat |
277 |
Q |
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| T |
45206836 |
caaaatcatatcaaataatcaatcttctctgctcgattgttatgttttgtcttgtaatgat |
45206896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 33 - 277
Target Start/End: Original strand, 45203165 - 45203411
Alignment:
| Q |
33 |
agaatatgttctaagaacttgcagggaccaa----ccatttattaacatgctaagtgttgctcttctaggccaatgtggtggcagttgacaatattgcaa |
128 |
Q |
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| T |
45203165 |
agaatatgttcttaaaacttggagggaccatggatccattcatttacatgctaagtgttgctcttctaggccattgtggtggcagttgacaatatagtaa |
45203264 |
T |
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| Q |
129 |
gtcaactgcatggtcctgtatgggttaatttgtgtgctgatgaaccaatttgcaatcgaatctgttctgtttgaaattcaccctttctcaaaatcatatc |
228 |
Q |
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| T |
45203265 |
gtcaactgcatggtcctgcgatagttagtttgtgtgttgatgaaccaatttgcaatcgaatttgttcagtttcaaaatcaacctttctcaaactc--atc |
45203362 |
T |
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| Q |
229 |
aaacaatcaatcttctatgctcgattgttatgttttgtcctgtgatgat |
277 |
Q |
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| T |
45203363 |
aatttttcaatcttctattctcgattgttatgttttgtcttgtaatgat |
45203411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 45211844 - 45211799
Alignment:
| Q |
175 |
aatttgcaatcgaatctgttctgtttgaaattcaccctttctcaaa |
220 |
Q |
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| T |
45211844 |
aatttgcaatcgaatctgttgggtttcaaattcaccatttctcaaa |
45211799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 45211899 - 45211867
Alignment:
| Q |
114 |
ttgacaatattgcaagtcaactgcatggtcctg |
146 |
Q |
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| T |
45211899 |
ttgacaatatggcaagtcaactgcatggtcctg |
45211867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 21466202 - 21466073
Alignment:
| Q |
18 |
atatttgccgcattcagaatatgttctaagaacttgcagggaccaaccatttattaacatgctaagtgttgctcttctaggccaatgtggtggcagttga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
21466202 |
atatttgccgcattcagaatatgttctaagaacttgcagggaccaatcatttattaacatgctaagtattgctcttctagaacaatgtggtggcagttga |
21466103 |
T |
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| Q |
118 |
caatattgcaagtcaactgcatggtcctgt |
147 |
Q |
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||||||||||||||||||||| |||||||| |
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| T |
21466102 |
caatattgcaagtcaactgcaaggtcctgt |
21466073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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