View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6266_high_2 (Length: 399)
Name: NF6266_high_2
Description: NF6266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6266_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 3 - 383
Target Start/End: Complemental strand, 9301116 - 9300738
Alignment:
| Q |
3 |
gaagcataggattgagctaatagactgagatacttgctatgaatgagcaaaagtgtaccattagactgctttttaacttcaacaccaagaaaatagttaa |
102 |
Q |
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| T |
9301116 |
gaagaataggattgagctaatagactgagatacttgctatgaatgagcaaaagtgtaccattagactgttttttaacttcaacaccaagaaaatagtcaa |
9301017 |
T |
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| Q |
103 |
gatcaccaacgtgcttaagtgagaaggtagcattgagctaatagactatgctgagaacaaaataagtggagctcgcagtgatgataatatcatcaacata |
202 |
Q |
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| T |
9301016 |
gatcaccaacgtgcttaagtgagaaggtagcattgagctaatagactacgctgagaacaaaataagtggagctcccagtgatgataatatcatcaacata |
9300917 |
T |
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| Q |
203 |
cacttagagaggtaaactatatgatgttaatagtatatctgaagagggagggattgctatcctaaaaacccaaagacaataaggtggttttgagtctctc |
302 |
Q |
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| T |
9300916 |
cactt--cgaggtaaactatatgatgttaatagtatatctgaagagggagggattgctatcctaaaaacccaaagacaataaggtggttttgagtctctc |
9300819 |
T |
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| Q |
303 |
aaaccattgtctaggagcttgctcgaggccatagagagccttgttgagtttacaaacaagtgaagggtgtgaagattcaaa |
383 |
Q |
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| T |
9300818 |
aaaccattgtctaggagcttgctcgaggccatagagagccttgttgagtttacaaacaagttaagggtgtgaagattcaaa |
9300738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 344
Target Start/End: Complemental strand, 39581908 - 39581865
Alignment:
| Q |
301 |
tcaaaccattgtctaggagcttgctcgaggccatagagagcctt |
344 |
Q |
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| T |
39581908 |
tcaaaccattgtctaggagcttgcttgaggccatagagagcctt |
39581865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 338
Target Start/End: Original strand, 3212848 - 3212882
Alignment:
| Q |
304 |
aaccattgtctaggagcttgctcgaggccatagag |
338 |
Q |
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| T |
3212848 |
aaccattgtctaggagcttgcttgaggccatagag |
3212882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 344
Target Start/End: Original strand, 6870254 - 6870297
Alignment:
| Q |
301 |
tcaaaccattgtctaggagcttgctcgaggccatagagagcctt |
344 |
Q |
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| T |
6870254 |
tcaaaccattgtctaggagcttgcttgaggccatagagagcctt |
6870297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 362
Target Start/End: Complemental strand, 3218995 - 3218934
Alignment:
| Q |
301 |
tcaaaccattgtctaggagcttgctcgaggccatagagagccttgttgagtttacaaacaag |
362 |
Q |
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||||||||||| |||||||| || | ||||||||| | || |||||||||||| |||||||| |
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| T |
3218995 |
tcaaaccattgcctaggagcctgtttgaggccatataaagtcttgttgagtttgcaaacaag |
3218934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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