View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6266_high_3 (Length: 397)
Name: NF6266_high_3
Description: NF6266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6266_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 381
Target Start/End: Complemental strand, 28926764 - 28926398
Alignment:
| Q |
16 |
acaaaaagcagatatnnnnnnnctcaaaacattagtgtaactacacatagtttggttggttgaagagtccctccatgattgcaccacataacttaaacca |
115 |
Q |
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| T |
28926764 |
acaaaaagcagatataaaaaaactcaaaatattagtgtaactacacatagtttggttggttgaacagtccctccgtgattgcaccacataacttaaacca |
28926665 |
T |
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| Q |
116 |
tccctatttgctccatccaaaattatatcccttctagtcacattggattcagtccatataatcaacatagcataaccaccaggatcaaaaagcataaaaa |
215 |
Q |
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| T |
28926664 |
tccttatttgctccatccaaaattatatcctttcgagtcacattggattcagtccatatattcaacatagcataaccaccaggatcaaaaagcataaaaa |
28926565 |
T |
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| Q |
216 |
atactacaaatttcttcatatatattctaatagagagagttagccacgacggaaaacaccaaaattaaacaggaatgcaatgaggtgccttttatgc-tt |
314 |
Q |
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| T |
28926564 |
atactacaaatttcttcatatatattctaatagagagagttagccatgacagaaaacactaaaattaaacaggaatgcaatgaggtgccttttatgcgtt |
28926465 |
T |
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| Q |
315 |
tcatgtatatatatgggcaagagggttggtgttgtaacatgtgcatatgcatgggaaatatgccagc |
381 |
Q |
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| T |
28926464 |
tcatgtatatatatgggcaagagggttggtgttgtaacatgtgcatatgcatgggaaatatgccagc |
28926398 |
T |
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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 30112872 - 30112956
Alignment:
| Q |
38 |
ctcaaaacattagtgtaactacacatagtttggttggttgaagagtccctccatgattgcaccacataacttaaaccatccctat |
122 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||||||||||| | |||||||||||| ||| ||||||||||||| |
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| T |
30112872 |
ctcaaaatattagtgtaactacacatactttggttggttgaagagtcccttcgggattgcaccacagaacccaaaccatccctat |
30112956 |
T |
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