View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6266_low_1 (Length: 993)

Name: NF6266_low_1
Description: NF6266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6266_low_1
NF6266_low_1
[»] chr4 (8 HSPs)
chr4 (276-975)||(49583343-49584042)
chr4 (26-275)||(49583037-49583286)
chr4 (625-789)||(49588989-49589153)
chr4 (143-268)||(5198998-5199124)
chr4 (151-235)||(4848615-4848699)
chr4 (198-275)||(15522606-15522683)
chr4 (97-166)||(29866154-29866223)
chr4 (329-362)||(49588574-49588607)
[»] chr5 (2 HSPs)
chr5 (89-210)||(37247603-37247723)
chr5 (119-162)||(27983524-27983567)
[»] chr2 (1 HSPs)
chr2 (89-166)||(5430280-5430357)
[»] chr8 (2 HSPs)
chr8 (144-235)||(7411339-7411429)
chr8 (139-207)||(3424305-3424372)
[»] chr6 (2 HSPs)
chr6 (137-212)||(6134221-6134296)
chr6 (141-201)||(2721839-2721899)
[»] chr1 (4 HSPs)
chr1 (96-216)||(26828549-26828669)
chr1 (85-157)||(34664919-34664991)
chr1 (188-256)||(35811949-35812017)
chr1 (226-275)||(16424901-16424950)


Alignment Details
Target: chr4 (Bit Score: 668; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 276 - 975
Target Start/End: Original strand, 49583343 - 49584042
Alignment:
Q  276 agagcaaactcaatttgccttaaaaccaactattgtatatatatgctccctttaaatatatttaaatttttggacaggtgaatgcagctgaaccagatga 375  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583343 agagcaaactcaattttccttaaaaccaactattgtaaatatatgctatctttaaatatatttaaatttttggacaggtgaatgcagctgaaccagatga 49583442  T
Q  376 acaatcacttccgtggtccattaaatatggtgtttttgatgatccggaaacatctgttgaggtgggtgaaatttaccaggctgaacttccaattttaatt 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583443 acaatcacttccgtggtccattaaatatggtgtttttgatgatccggaaacatctgttgaggtgggtgaaatttaccaggctgaacttccaattttaatt 49583542  T
Q  476 tcaaagtctgagtatattttgttgcaaaataacaccgaggcagaaagtatacaccacaactttcaaatagcattacctatcccaataacttggataaaga 575  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  49583543 tcaaagtctgagtatattttgttgcaaaataacaccgaggcagaaagtatacaccacaactttcaaataggattacctatcccaataacttggataaaga 49583642  T
Q  576 gttatgatattcgggaagaaacaaagattgggatgcatgaggagcatgaacataaagggcagattcttgttcctggctctcgaagtgacaactggactga 675  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583643 gttatgatattcgggaagaaacaaagattgggatgcatgaggagcatgaacataaagggcagattcttgttcctggctctcgaagtgacaactggactga 49583742  T
Q  676 aatcgaagaggccggtttagtccttggtttatatatatttgggaagaacttcgttgaagtgaaaaaatttatcggcaataagaagatgaaggacatattg 775  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583743 aattgaagaggccggtttagtccttggtttatatatatttgggaagaacttcgttgaagtgaaaaaatttatcggcaataagaagatgaaggacatattg 49583842  T
Q  776 tcattctattatggaaaatttcgtaagtcttacaaatatcagagatggtgtggatgtagggaaggcaaaagcaagaaatgcaacttagggcataaaattt 875  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  49583843 tcattctattatggaaaatttcgtaagtcttacaaatatcagagatggtgtggatgtagggaagggaaaagcaagaaatgcaacttagggcataaaattt 49583942  T
Q  876 tcactgaatcaaggcaacgtgagcttttgtttcgtctgatgccgaatgtaccggaggaagttcaaaatgaattacttgaggtaatgacataaacaatttc 975  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583943 tcactgaatcaaggcaacgtgagcttttgtttcgtctgataccgaatgtaccggaggaagttcaaaatgaattacttgaggtaatgacataaacaatttc 49584042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 26 - 275
Target Start/End: Original strand, 49583037 - 49583286
Alignment:
Q  26 tatcatatccaagattttaaataaaggtctcagtcaagtttgtggttgcgttaagatgtcgcaatttcgattgttacagatgttgcattgcgcattgtgg 125  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583037 tatcatatccaaggttttaaataaaggtctcagtcaagtttgtggttgcgttaagatgtcgcaatttcgattgttacagatgttgcattgcgcattgtgg 49583136  T
Q  126 ttgtcgcagcgtgaattaatcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttct 225  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583137 ttgtcgcagcgtgaattaatcacaacattgcataagtcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttct 49583236  T
Q  226 taatttcatagtgtaattattttcataatttagtaatgaatttatttctt 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583237 taatttcatagtgtaattattttcataatttagtaatgaatttatttctt 49583286  T

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Target: chr4; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 625 - 789
Target Start/End: Original strand, 49588989 - 49589153
Alignment:
Q  625 acataaagggcagattcttgttcctggctctcgaagtgacaactggactgaaatcgaagaggccggtttagtccttggtttatatatatttgggaagaac 724  Q
    |||||||||| |||||||||||| ||| ||| ||| ||| | ||||||||||||||||||||||  |||||||||||| || |||| |||||||||||||    
T  49588989 acataaagggaagattcttgttcatggttcttgaactgatacctggactgaaatcgaagaggccaatttagtccttggcttttatacatttgggaagaac 49589088  T
Q  725 ttcgttgaagtgaaaaaatttatcggcaataagaagatgaaggacatattgtcattctattatgg 789  Q
    |||||| |||||||||  |||||  |||||||||| |||||||| | | ||||||||||||||||    
T  49589089 ttcgttcaagtgaaaaggtttatacgcaataagaaaatgaaggataaactgtcattctattatgg 49589153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 143 - 268
Target Start/End: Original strand, 5198998 - 5199124
Alignment:
Q  143 aatcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttcttaatttca-tagtgtaa 241  Q
    ||||| ||||||||| || | |||| ||||||| ||||| |||| |||| ||||||||| |||||||||||||| ||||||| |||||||| || | |||    
T  5198998 aatcataacattgcacaaatattattaaaattatttatattatcatataatgtataataacttaatttctcattgtttcttcataatttcattactataa 5199097  T
Q  242 ttattttcataatttagtaatgaattt 268  Q
    || |||||||||||| |||||||||||    
T  5199098 ttcttttcataattttgtaatgaattt 5199124  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 4848699 - 4848615
Alignment:
Q  151 cattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttcttaatttcata 235  Q
    ||||||| || | |||| ||||||| |||||||||| |||| ||||||||| |||||||||||||| ||||||| ||||||||||    
T  4848699 cattgcacaaatattattaaaattatttatactatcatataatgtataataacttaatttctcattgtttcttcataatttcata 4848615  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 275
Target Start/End: Original strand, 15522606 - 15522683
Alignment:
Q  198 aatagcttaatttctcattatttcttcttaatttcatagtgtaattattttcataatttagtaatgaatttatttctt 275  Q
    |||| |||||||||| ||| ||| ||| |||||| ||| ||||||||||||||| |||  ||||||||||| ||||||    
T  15522606 aataacttaatttcttattgtttattcataattttataatgtaattattttcattattatgtaatgaatttgtttctt 15522683  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 29866223 - 29866154
Alignment:
Q  97 tgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgcataattctta 166  Q
    |||||| |||||||| || |  |||||||||||||  | |||||||||||||||||||||| || |||||    
T  29866223 tgttactgatgttgcgttacagattgtggttgtcgtggtgtgaattaatcacaacattgcacaaatctta 29866154  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 329 - 362
Target Start/End: Original strand, 49588574 - 49588607
Alignment:
Q  329 aaatatatttaaatttttggacaggtgaatgcag 362  Q
    |||||||||||||| |||||||||||||||||||    
T  49588574 aaatatatttaaatatttggacaggtgaatgcag 49588607  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 37247723 - 37247603
Alignment:
Q  89 atttcgattgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgcataattcttataaaaattaattatactatctt 188  Q
    ||||||| |||||| |||||||| || |  |||||||||||||| | ||||||||||||||||| |||| || | ||||  |||| | |||| ||||| |    
T  37247723 atttcgagtgttacggatgttgcgttacagattgtggttgtcgcggtgtgaattaatcacaacaatgcacaaatattat-taaatcatttattctatcat 37247625  T
Q  189 atattgtataatagcttaattt 210  Q
    ||| ||||||||| ||||||||    
T  37247624 atagtgtataataacttaattt 37247603  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 27983524 - 27983567
Alignment:
Q  119 attgtggttgtcgcagcgtgaattaatcacaacattgcataatt 162  Q
    |||||||| ||||||| |||||||||||||||||||||| ||||    
T  27983524 attgtggtcgtcgcagggtgaattaatcacaacattgcacaatt 27983567  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 5430357 - 5430280
Alignment:
Q  89 atttcgattgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgcataattctta 166  Q
    |||||| ||||||| ||||||||||| |  |||||||||||||| | ||||||||||||||| |||||| || |||||    
T  5430357 atttcggttgttacggatgttgcattacagattgtggttgtcgcggtgtgaattaatcacaatattgcacaactctta 5430280  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 7411339 - 7411429
Alignment:
Q  144 atcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttcttaatttcata 235  Q
    ||||||||||| || || |||||| ||||||| ||||  ||||||||| ||||||||| |||||||||| ||| |||||||||  |||||||    
T  7411339 atcacaacatttcacaaatcttattaaaattatttatgatatcttataatgtataataacttaatttct-attgtttcttcttcttttcata 7411429  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 3424305 - 3424372
Alignment:
Q  139 aattaatcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaa 207  Q
    |||||||||||||| |||| |||  |||||||||||| |||||||||| |||| ||||||||| |||||    
T  3424305 aattaatcacaacaatgcacaata-ttataaaaattatttatactatcatataatgtataataacttaa 3424372  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 6134221 - 6134296
Alignment:
Q  137 tgaattaatcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttct 212  Q
    ||||||||||||||||||||| || |||||| ||||| | ||||||||||  ||| ||||||||| ||| ||||||    
T  6134221 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataacttgatttct 6134296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 2721899 - 2721839
Alignment:
Q  141 ttaatcacaacattgcataattcttataaaaattaattatactatcttatattgtataata 201  Q
    ||||||||||| |||||||| | |||| ||||||| |||||||||| |||| |||||||||    
T  2721899 ttaatcacaaccttgcataaatattattaaaattatttatactatcatataatgtataata 2721839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 216
Target Start/End: Complemental strand, 26828669 - 26828549
Alignment:
Q  96 ttgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgcataattcttataaaaattaattatactatcttatattgt 195  Q
    |||||| |||||||||||| |  |||||  ||||||| | || ||||||||||||||||||| || | |||| ||| ||| |||||||| | |||| |||    
T  26828669 ttgttatagatgttgcattacagattgttattgtcgcggtgtaaattaatcacaacattgcacaaattttattaaacttatttatactaacatataatgt 26828570  T
Q  196 ataatagcttaatttctcatt 216  Q
      || | ||||||||||||||    
T  26828569 gaaaaaacttaatttctcatt 26828549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 34664991 - 34664919
Alignment:
Q  85 cgcaatttcgattgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgca 157  Q
    |||||||||| ||||||| |||||||||||  | |||||||||||| | |  ||||||||| |||||||||||    
T  34664991 cgcaatttcggttgttacggatgttgcattatggattgtggttgtcacggtatgaattaattacaacattgca 34664919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 35812017 - 35811949
Alignment:
Q  188 tatattgtataatagcttaatttctcattatttcttcttaatttcatagtgtaattattttcataattt 256  Q
    |||| ||||||||| |||||||||||| | ||||||||||||| |||| ||||||| |||  |||||||    
T  35812017 tataatgtataataacttaatttctcactgtttcttcttaattccataatgtaattctttcaataattt 35811949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 16424901 - 16424950
Alignment:
Q  226 taatttcatagtgtaattattttcataatttagtaatgaatttatttctt 275  Q
    |||||||||| || |||||||||| |||||| ||||||||||| ||||||    
T  16424901 taatttcataatgaaattattttcttaattttgtaatgaatttgtttctt 16424950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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