View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6266_low_10 (Length: 249)

Name: NF6266_low_10
Description: NF6266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6266_low_10
NF6266_low_10
[»] chr1 (2 HSPs)
chr1 (51-232)||(47091836-47092032)
chr1 (39-73)||(30259553-30259587)
[»] chr7 (2 HSPs)
chr7 (31-99)||(24909608-24909676)
chr7 (31-73)||(5006567-5006609)
[»] chr3 (2 HSPs)
chr3 (31-73)||(12923383-12923425)
chr3 (26-73)||(2175901-2175949)
[»] chr2 (3 HSPs)
chr2 (39-73)||(7103549-7103583)
chr2 (31-73)||(33944575-33944617)
chr2 (66-138)||(37474656-37474728)
[»] chr4 (2 HSPs)
chr4 (31-72)||(20052933-20052973)
chr4 (32-72)||(927447-927487)
[»] chr6 (2 HSPs)
chr6 (27-99)||(1904759-1904831)
chr6 (27-99)||(1908992-1909064)


Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 51 - 232
Target Start/End: Original strand, 47091836 - 47092032
Alignment:
Q  51 ttaaagcagtttgactttattttttgttaagaaaatagtttatacata---------------aacatttgtgctataagtgcttgatttaattatttat 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||    
T  47091836 ttaaagcagtttgactttattttttgttaagaaaatagtttatacataaacatttataccataaacatttgtgctataagtgcttgatttaattatttat 47091935  T
Q  136 ccaaaaagggtcttaagctgtttttcattggacacatttgatgtgtttttctgcagataagagatggagaggctgatataactttggtggtcagaat 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47091936 ccaaaaagggtcttaagctgtttttcattggacacatttgatgtgtttttctgcagataagagatggagaggctgatataactttggtggtcagaat 47092032  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 30259553 - 30259587
Alignment:
Q  39 ttatagcttatattaaagcagtttgactttatttt 73  Q
    ||||||||||||| |||||||||||||||||||||    
T  30259553 ttatagcttatatcaaagcagtttgactttatttt 30259587  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 24909676 - 24909608
Alignment:
Q  31 aaaacaatttatagcttatattaaagcagtttgactttattttttgttaagaaaatagtttatacataa 99  Q
    ||||||| ||||||||||||| |||  | |||||||||| ||||||||||  |||||| ||||||||||    
T  24909676 aaaacaacttatagcttatatgaaaataatttgactttactttttgttaaagaaatagcttatacataa 24909608  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 5006567 - 5006609
Alignment:
Q  31 aaaacaatttatagcttatattaaagcagtttgactttatttt 73  Q
    ||||||||||||| ||||||| ||| |||||||||||||||||    
T  5006567 aaaacaatttataccttatatgaaaacagtttgactttatttt 5006609  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 12923383 - 12923425
Alignment:
Q  31 aaaacaatttatagcttatattaaagcagtttgactttatttt 73  Q
    ||||||| ||||||||||||  |||||||||||||||||||||    
T  12923383 aaaacaacttatagcttataagaaagcagtttgactttatttt 12923425  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 2175901 - 2175949
Alignment:
Q  26 tttataaaacaatttatagcttatattaaagcag-tttgactttatttt 73  Q
    ||||| |||||||||||||||||||| |||| || ||||||||||||||    
T  2175901 tttatgaaacaatttatagcttatataaaagtagttttgactttatttt 2175949  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 7103549 - 7103583
Alignment:
Q  39 ttatagcttatattaaagcagtttgactttatttt 73  Q
    ||||||||||||||||| |||||||||||||||||    
T  7103549 ttatagcttatattaaaacagtttgactttatttt 7103583  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 33944617 - 33944575
Alignment:
Q  31 aaaacaatttatagcttatattaaagcagtttgactttatttt 73  Q
    ||||||||||||||||||||| ||| || ||||||||||||||    
T  33944617 aaaacaatttatagcttatatgaaaacaatttgactttatttt 33944575  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 37474728 - 37474656
Alignment:
Q  66 tttattttttgttaagaaaatagtttatacataaacatttgtgctataagtgcttgatttaattatttatcca 138  Q
    ||||||||||||||   ||||||||||| |||||||| ||  ||||||||||||| ||| |  ||||||||||    
T  37474728 tttattttttgttatcgaaatagtttatgcataaacacttaagctataagtgcttaattaagctatttatcca 37474656  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 20052933 - 20052973
Alignment:
Q  31 aaaacaatttatagcttatattaaagcagtttgactttattt 72  Q
    |||||||||||||||||||||||||  |||||||||||||||    
T  20052933 aaaacaatttatagcttatattaaa-aagtttgactttattt 20052973  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 927487 - 927447
Alignment:
Q  32 aaacaatttatagcttatattaaagcagtttgactttattt 72  Q
    |||||| ||||||||||||| ||| ||||||||||||||||    
T  927487 aaacaagttatagcttatatgaaaacagtttgactttattt 927447  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 1904831 - 1904759
Alignment:
Q  27 ttataaaacaatttatagcttatattaaagcagtttgactttattttttgttaagaaaatagtttatacataa 99  Q
    |||||||||||| |||||||||||| |||  | |||||||||||||| | || ||  ||||| ||||||||||    
T  1904831 ttataaaacaatctatagcttatataaaaataatttgactttattttatatttagttaatagcttatacataa 1904759  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 1909064 - 1908992
Alignment:
Q  27 ttataaaacaatttatagcttatattaaagcagtttgactttattttttgttaagaaaatagtttatacataa 99  Q
    |||||||||||| |||||||||||| |||  | |||||||||||||| | || ||  ||||| ||||||||||    
T  1909064 ttataaaacaatctatagcttatataaaaataatttgactttattttatatttagttaatagcttatacataa 1908992  T

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