View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6266_low_4 (Length: 362)
Name: NF6266_low_4
Description: NF6266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6266_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 352
Target Start/End: Complemental strand, 30584572 - 30584241
Alignment:
| Q |
17 |
agttagttcatattttgtacgaacaaaaatttaactttttctatcaagaacatgatctcattaatagataatttaactatgtgtattgtgtaatgctcat |
116 |
Q |
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| T |
30584572 |
agttagttcatattttgtaagaacgaaaatttaactttttctatcaagaacatgatctcattaatagataatttaactatgtgta-------atgctcat |
30584480 |
T |
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| Q |
117 |
tgttgcgagcaatgcattaacgagaactaacgaaaggtgttaacaagtttaatcaccgcactaaacaacatgtgttgcgccaaatgcagagtaatacttg |
216 |
Q |
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| T |
30584479 |
tgttacgagcaatgcatcaacgagaactaacgaaaggtgttaacaagcttaatcaccgcactaaacaacatgttttgccccaaatgtggagtaatacttg |
30584380 |
T |
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| Q |
217 |
ttccaatctttgcacgtatccatttgttgtgtttcgtggttgaatctatcgtaccaaatagcactcttgtttaactatatttatcaacattttagaagtt |
316 |
Q |
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| T |
30584379 |
ttccaatctttgcacgtatccatttgctgcgtttcgtcgttgaatctatcgtaccaaatagcactcttgtttaactatatttatcaacattttagaagtt |
30584280 |
T |
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| Q |
317 |
ttaaggtatgtaaagaaaa---acaaaattactcctatg |
352 |
Q |
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| T |
30584279 |
ttaaggtatgtaaagaaaaacaacaaaattactcctatg |
30584241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 106 - 281
Target Start/End: Original strand, 2909882 - 2910060
Alignment:
| Q |
106 |
gtaatgctcattgttgcgagcaatgcattaacgagaactaacgaaaggtgttaacaagtttaa-tcaccgcactaaacaacatg--tgttgcgccaaatg |
202 |
Q |
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| T |
2909882 |
gtaatgctcattgttacgagcaatgtatcaacgaaaaataacgaaaggttttaaccagcttaattcatcccactaaacaacatgtattttgcgccaaatg |
2909981 |
T |
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| Q |
203 |
cagagtaatacttgttccaatctttgcacgtatccatttgttgtgtttcgtggttgaatctatcgtaccaaatagcact |
281 |
Q |
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| T |
2909982 |
tggagttatacttgttccattctttacatgtgtccattcattacttttcgtcgttaaatttatcgtaccaaataacact |
2910060 |
T |
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